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blasr-libcpp: improved setup_run_environment (#18038)

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Added non standard paths to LD_LIBRARY_PATH
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manifest 2020-10-15 23:56:39 +10:30 committed by GitHub
parent f45e8ac70b
commit 4b9bdea26b
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GPG Key ID: 4AEE18F83AFDEB23
1 changed files with 11 additions and 1 deletions
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12
var/spack/repos/builtin/packages/blasr-libcpp/package.py
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@ -15,6 +15,8 @@ class BlasrLibcpp(Package):
homepage = "https://github.com/PacificBiosciences/blasr_libcpp" homepage = "https://github.com/PacificBiosciences/blasr_libcpp"
url = "https://github.com/PacificBiosciences/blasr_libcpp/archive/5.3.1.tar.gz" url = "https://github.com/PacificBiosciences/blasr_libcpp/archive/5.3.1.tar.gz"
maintainers = ['robqiao']
version('5.3.1', sha256='45a673255bfe7e29ed1f5bdb6410aa45cb6b907400d038c3da9daf1058b09156') version('5.3.1', sha256='45a673255bfe7e29ed1f5bdb6410aa45cb6b907400d038c3da9daf1058b09156')
depends_on('pbbam') depends_on('pbbam')
@ -23,7 +25,7 @@ class BlasrLibcpp(Package):
# major version 1.9 and the 1.10.1 version doesn't build correctly. # major version 1.9 and the 1.10.1 version doesn't build correctly.
# https://github.com/PacificBiosciences/blasr/issues/355 # https://github.com/PacificBiosciences/blasr/issues/355
depends_on('python', type='build') depends_on('python@2.7:2.8', type='build')
phases = ['configure', 'build', 'install'] phases = ['configure', 'build', 'install']
@ -49,3 +51,11 @@ def setup_dependent_build_environment(self, env, dependent_spec):
env.prepend_path('LD_LIBRARY_PATH', self.spec.prefix.hdf) env.prepend_path('LD_LIBRARY_PATH', self.spec.prefix.hdf)
env.prepend_path('LD_LIBRARY_PATH', self.spec.prefix.alignment) env.prepend_path('LD_LIBRARY_PATH', self.spec.prefix.alignment)
env.prepend_path('LD_LIBRARY_PATH', self.spec.prefix.pbdata) env.prepend_path('LD_LIBRARY_PATH', self.spec.prefix.pbdata)
def setup_run_environment(self, env):
env.prepend_path('LD_LIBRARY_PATH',
self.spec['blasr-libcpp'].prefix.pbdata)
env.prepend_path('LD_LIBRARY_PATH',
self.spec['blasr-libcpp'].prefix.alignment)
env.prepend_path('LD_LIBRARY_PATH',
self.spec['blasr-libcpp'].prefix.hdf)