Update ADIOS Package
This PR updates the ADIOS package. **Changes:** - add latest stable release `1.10.0` - add previous versions (hashes) - add default license header - add build options (shamelessly taken from HDF5 package) - add validation for excisting FC (as in HDF5) and make optional - handle mxml dependency correctly (not required in 1.10.0+) - add `CFLAGS=-fPIC` to build shared (python) libs in ADIOS' lib - remove `-DMPICH_IGNORE_CXX_SEEK` since it is normally not required - remove `MPICC/CXX?FC` since `--with-mpi` just performs well - add transforms: - `zlib`: useful (optional) default - `szip`: optional (compile often broken) - add transports that are not as performant as the `.bp` format: - `hdf5`: non-default - `netcdf`: non-default, close #1610
This commit is contained in:
Axel Huebl
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31cab4bae2
commit
4bd863761a
@ -1,6 +1,30 @@
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import os
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the LICENSE file for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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import os
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class Adios(Package):
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@ -12,30 +36,96 @@ class Adios(Package):
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"""
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homepage = "http://www.olcf.ornl.gov/center-projects/adios/"
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url = "https://github.com/ornladios/ADIOS/archive/v1.9.0.tar.gz"
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url = "https://github.com/ornladios/ADIOS/archive/v1.10.0.tar.gz"
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version('1.9.0', '310ff02388bbaa2b1c1710ee970b5678')
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version('1.10.0', 'eff450a4c0130479417cfd63186957f3')
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version('1.9.0' , '310ff02388bbaa2b1c1710ee970b5678')
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version('1.8.0' , 'c9116ec31e6b386f0e6ea5ab675c57e9')
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version('1.7.0' , '266897ee3a390985d840bbe2935b4293')
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version('1.6.0' , 'b3c735f3afbf552ec0d5e8152bffd778')
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variant('shared', default=True,
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description='Builds a shared version of the library')
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variant('fortran', default=True,
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description='Enable Fortran bindings support')
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variant('mpi', default=False, description='Enable MPI support')
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variant('infiniband', default=False, description='Enable infiniband support')
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variant('zlib', default=True, description='Enable szip transform support')
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variant('szip', default=False, description='Enable szip transform support')
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variant('hdf5', default=False, description='Enable HDF5 transport support')
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variant('netcdf', default=False, description='Enable NetCDF transport support')
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# Lots of setting up here for this package
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# module swap PrgEnv-intel PrgEnv-$COMP
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# module load cray-netcdf/4.3.3.1
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# module load cray-hdf5/1.8.14
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# module load python/2.7.10
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depends_on('hdf5')
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depends_on('mxml')
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depends_on('mpi', when='+mpi')
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# shipped within ADIOS 1.10.0+
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depends_on('mxml', when='@:1.9.0')
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# optional transformations
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depends_on('zlib', when='+zlib')
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depends_on('szip', when='+szip')
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# optional transports
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depends_on('hdf5', when='+hdf5')
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depends_on('netcdf', when='+netcdf')
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def validate(self, spec):
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"""
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Checks if incompatible variants have been activated at the same time
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:param spec: spec of the package
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:raises RuntimeError: in case of inconsistencies
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"""
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if '+fortran' in spec and not self.compiler.fc:
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msg = 'cannot build a fortran variant without a fortran compiler'
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raise RuntimeError(msg)
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def install(self, spec, prefix):
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configure_args = ["--prefix=%s" % prefix,
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"--with-mxml=%s" % spec['mxml'].prefix,
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"--with-hdf5=%s" % spec['hdf5'].prefix,
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"--with-netcdf=%s" % os.environ["NETCDF_DIR"],
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"--with-infiniband=no",
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"MPICC=cc", "MPICXX=CC", "MPIFC=ftn",
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"CPPFLAGS=-DMPICH_IGNORE_CXX_SEEK"]
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self.validate(spec)
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# Handle compilation after spec validation
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extra_args = []
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# required, otherwise building its python bindings on ADIOS will fail
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extra_args.append("CFLAGS=-fPIC")
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# MXML is shipped within ADIOS in 1.10.0+
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if spec.satisfies('@:1.9.0'):
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extra_args.append('--with-mxml=%s' % spec['mxml'].prefix)
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if '+shared' in spec:
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extra_args.append('--enable-shared')
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if '+mpi' in spec:
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extra_args.append('--with-mpi')
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if '+infiniband' in spec:
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extra_args.append('--with-infiniband')
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else:
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extra_args.append('--with-infiniband=no')
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if '+fortran' in spec:
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extra_args.append('--enable-fortran')
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else:
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extra_args.append('--disable-fortran')
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if '+zlib' in spec:
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extra_args.append('--with-zlib=%s' % spec['zlib'].prefix)
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if '+szip' in spec:
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extra_args.append('--with-szip=%s' % spec['szip'].prefix)
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if '+hdf5' in spec:
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extra_args.append('--with-hdf5=%s' % spec['hdf5'].prefix)
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if '+netcdf' in spec:
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extra_args.append('--with-netcdf=%s' % os.environ["NETCDF_DIR"])
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if spec.satisfies('%gcc'):
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configure_args.extend(["CC=gcc", "CXX=g++", "FC=gfortran"])
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extra_args.extend(["CC=gcc", "CXX=g++"])
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if '+fortran' in spec:
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extra_args.extend(["FC=gfortran"])
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configure(*configure_args)
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configure("--prefix=%s" % prefix,
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*extra_args)
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make()
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make("install")
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