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tppred: new package (#5091)

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* tppred: new package

* fixed url_for_version

* fixed version spec on dependency

* removing unneeded dependency
This commit is contained in:
Audrey Thoma 2017-08-16 19:48:50 -05:00 committed by becker33
parent d423f85fed
commit 4c32b0ad56
2 changed files with 55 additions and 1 deletions
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2
var/spack/repos/builtin/packages/py-scikit-learn/package.py
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@ -35,8 +35,8 @@ class PyScikitLearn(PythonPackage):
version('0.15.2', 'd9822ad0238e17b382a3c756ea94fe0d')
version('0.16.1', '363ddda501e3b6b61726aa40b8dbdb7e')
version('0.17.1', 'a2f8b877e6d99b1ed737144f5a478dfc')
version('0.13.1', 'acba398e1d46274b8470f40d0926e6a4')
depends_on('python@2.6:2.8,3.3:')
depends_on('py-setuptools', type='build')
depends_on('py-numpy@1.6.1:', type=('build', 'run'))
depends_on('py-scipy@0.9:', type=('build', 'run'))

54
var/spack/repos/builtin/packages/tppred/package.py Normal file
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@ -0,0 +1,54 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Tppred(Package):
"""TPPRED is a software package for the prediction of mitochondrial
targeting peptides from protein primary sequence."""
homepage = "https://tppred2.biocomp.unibo.it/tppred2/default/software"
url = "http://biocomp.unibo.it/savojard/tppred2.tar.gz"
version('2.0', 'cd848569f6a8aa51d18fbe55fe45d624')
depends_on('python@2.7:2.999', type='run')
depends_on('py-scikit-learn@0.13.1', type='run')
depends_on('emboss')
def url_for_version(self, version):
url = 'http://biocomp.unibo.it/savojard/tppred{0}.tar.gz'
return url.format(version.up_to(1))
def install(self, spec, prefix):
mkdirp(prefix.bin)
with working_dir('bin'):
install('tppred2.py', prefix.bin)
install_tree('data', prefix.data)
install_tree('example', prefix.example)
install_tree('tppred2modules', prefix.modules)
def setup_environment(self, spack_env, run_env):
run_env.set('TPPRED_ROOT', prefix)