From 4d09bc13d947f7db3b4eb81b8f91e0fa7719357c Mon Sep 17 00:00:00 2001 From: Wouter Deconinck Date: Tue, 20 Aug 2024 13:22:50 -0500 Subject: [PATCH] RPackage: urls=[bioc/src/contrib,data/annotation/src/contrib] for bioc --- lib/spack/spack/build_systems/r.py | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/lib/spack/spack/build_systems/r.py b/lib/spack/spack/build_systems/r.py index 524fea87306..0fd18876992 100644 --- a/lib/spack/spack/build_systems/r.py +++ b/lib/spack/spack/build_systems/r.py @@ -93,6 +93,13 @@ def urls(cls): "https://cloud.r-project.org/src/contrib/Archive/{cls.cran}/" + f"{cls.cran}_{str(list(cls.versions)[0])}.tar.gz", ] + elif cls.bioc: + return [ + "https://bioconductor.org/packages/release/bioc/src/contrib/" + + f"{cls.bioc}_{str(list(cls.versions)[0])}.tar.gz", + "https://bioconductor.org/packages/release/data/annotation/src/contrib/" + + f"{cls.bioc}_{str(list(cls.versions)[0])}.tar.gz", + ] else: return [cls.url]