From 4d7a6377885bc5e3d31042357d6dd1d5d90fe8a9 Mon Sep 17 00:00:00 2001 From: sid <48367591+sidpbury@users.noreply.github.com> Date: Wed, 18 Dec 2024 20:20:33 -0500 Subject: [PATCH] r-lidr and dependency r-rlas (#48051) * r-rlas is a dependency for r-lidr * new package r-lidr w/ suggests to address masking issues * fixed flake8 issues and added maintainers * removed boost import statement for flake sake --- .../repos/builtin/packages/r-lidr/package.py | 52 +++++++++++++++++++ .../repos/builtin/packages/r-rlas/package.py | 27 ++++++++++ 2 files changed, 79 insertions(+) create mode 100644 var/spack/repos/builtin/packages/r-lidr/package.py create mode 100644 var/spack/repos/builtin/packages/r-rlas/package.py diff --git a/var/spack/repos/builtin/packages/r-lidr/package.py b/var/spack/repos/builtin/packages/r-lidr/package.py new file mode 100644 index 00000000000..56961b7707b --- /dev/null +++ b/var/spack/repos/builtin/packages/r-lidr/package.py @@ -0,0 +1,52 @@ +# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class RLidr(RPackage): + """Airborne LiDAR data manipulation and visualisation for forestry application""" + + homepage = "https://github.com/r-lidar/lidR" + url = "https://cran.r-project.org/src/contrib/lidR_4.1.2.tar.gz" + + maintainers("sidpbury") + + license("GPL-3.0") + + version("4.1.2", sha256="e452c35c189fb8bcfedb53b2cb1184a6feee11c2f3ccf1db4b161a9ce700a9eb") + + variant("suggests", default=False, description="adding suggests helps masking issues") + + # Depends + depends_on("r@3.5.0:", type=("build", "run")) + + # Imports + depends_on("r-classint", type=("build", "run")) + depends_on("r-glue", type=("build", "run")) + depends_on("r-lazyeval", type=("build", "run")) + depends_on("r-rcpp@1.0.3:", type=("build", "run")) + depends_on("r-rgl", type=("build", "run")) + depends_on("r-rlas@1.5.0:", type=("build", "run")) + depends_on("r-sf", type=("build", "run")) + depends_on("r-stars", type=("build", "run")) + depends_on("r-terra@1.5:", type=("build", "run")) + + # Linking To + depends_on("r-bh", type=("build", "run")) + depends_on("r-rcpparmadillo", type=("build", "run")) + + # Suggests + depends_on("r-future", type=("build", "run"), when="+suggests") + depends_on("r-geometry", type=("build", "run"), when="+suggests") + depends_on("r-gstat", type=("build", "run"), when="+suggests") + depends_on("r-raster", type=("build", "run"), when="+suggests") + depends_on("r-rjson", type=("build", "run"), when="+suggests") + depends_on("r-mapview", type=("build", "run"), when="+suggests") + depends_on("r-progress", type=("build", "run"), when="+suggests") + depends_on("r-sp", type=("build", "run"), when="+suggests") + depends_on("r-testthat@2.1.0:", type=("build", "run"), when="+suggests") + depends_on("r-knitr", type=("build", "run"), when="+suggests") + depends_on("r-rmarkdown", type=("build", "run"), when="+suggests") diff --git a/var/spack/repos/builtin/packages/r-rlas/package.py b/var/spack/repos/builtin/packages/r-rlas/package.py new file mode 100644 index 00000000000..a66756d4903 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-rlas/package.py @@ -0,0 +1,27 @@ +# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class RRlas(RPackage): + """R package to read and write las and laz files used to store LiDAR data""" + + homepage = "https://cran.r-project.org" + cran = "rlas" + + maintainers("sidpbury") + + license("LGPL-3.0-only") + + version("1.8.0", sha256="dc7903cfcebcd8c0313e101cae732c8ef7b5839318799c1d3d7b778fa178143b") + version("1.7.0", sha256="11768b6f21e96905cee6c39eb980b92373afed10ab144bdbab2a7a7602fc6b29") + + depends_on("r@3.6.0:", type=("build", "run")) + depends_on("parallel", type=("build", "run")) + depends_on("r-r-utils", type=("build", "run")) + depends_on("r-rcpp", type=("build", "run")) + depends_on("r-data-table", type=("build", "run")) + depends_on("boost@:1.84+filesystem+program_options+numpy+python+regex+serialization+thread")