purify: new package (#46839)

Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>

var/spack/repos/builtin/packages/purify/package.py

@@ -0,0 +1,73 @@
+# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack.package import *
+
+
+class Purify(CMakePackage):
+    """PURIFY is an open-source collection of routines written in C++ available under the
+    license below. It implements different tools and high-level to perform radio interferometric
+    imaging, i.e. to recover images from the Fourier measurements taken by radio interferometric
+    telescopes.
+    """
+
+    homepage = "https://astro-informatics.github.io/purify/"
+    url = "https://github.com/astro-informatics/purify/archive/refs/tags/v4.2.0.tar.gz"
+    git = "https://github.com/astro-informatics/purify"
+
+    maintainers("tkoskela", "mmcleod89", "20DM")
+    license("GPL-2.0")
+
+    version("4.2.0", sha256="4d674007efc727628839fb6c8864e74f22adb39ee6405d3dab273f65b31b37e6")
+
+    variant("tests", default=True, description="Build tests")
+    variant("openmp", default=True, description="Enable multithreading with OpenMP")
+    variant("mpi", default=True, description="Enable parallelisation with MPI")
+    variant("benchmarks", default=False, description="Build benchmarks")
+    variant("docs", default=False, description="Enable multithreading with OpenMP")
+    variant("coverage", default=False, description="Enable code coverage")
+
+    depends_on("cmake@3")
+    depends_on("eigen@3.4:3")
+    depends_on("libtiff@4.7:")
+    depends_on("fftw-api")
+    depends_on("yaml-cpp@0.7:")
+    depends_on("boost@1.82+system+filesystem")
+    depends_on("cfitsio@4")
+    depends_on("cubature@1")
+    depends_on("sopt~mpi", when="~mpi")
+    depends_on("sopt+mpi", when="+mpi")
+    depends_on("sopt~openmp", when="~openmp")
+    depends_on("sopt+openmp", when="+openmp")
+    depends_on("catch2@3.4:3", when="+tests")
+    depends_on("mpi", when="+mpi")
+    depends_on("benchmark@1.8~performance_counters", when="+benchmarks")
+    depends_on("doxygen@1.9:1.12+graphviz", when="+docs")
+
+    def cmake_args(self):
+        args = [
+            self.define_from_variant("docs", "docs"),
+            self.define_from_variant("tests", "tests"),
+            self.define_from_variant("benchmarks", "benchmarks"),
+            self.define_from_variant("openmp", "openmp"),
+            self.define_from_variant("dompi", "mpi"),
+            self.define_from_variant("coverage", "coverage"),
+        ]
+        return args
+
+    def setup_run_environment(self, env):
+        if "+tests" in self.spec:
+            env.prepend_path("PATH", self.spec.prefix.tests)
+        if "+benchmarks" in self.spec:
+            env.prepend_path("PATH", join_path(self.spec.prefix, "benchmarks"))
+
+    def install(self, spec, prefix):
+        with working_dir(self.build_directory):
+            make("install")
+            if "+tests" in spec:
+                install_tree("cpp/tests", spec.prefix.tests)
+                install_tree("data", join_path(spec.prefix, "data"))
+            if "+benchmarks" in spec:
+                install_tree("cpp/benchmarks", join_path(spec.prefix, "benchmarks"))

var/spack/repos/builtin/packages/sopt/package.py

@@ -33,11 +33,12 @@ class Sopt(CMakePackage):
 
     depends_on("cmake@3")
     depends_on("eigen@3.4")
-    depends_on("libtiff@4")
+    depends_on("libtiff@4.7:")
     depends_on("mpi", when="+mpi")
     depends_on("catch2@3.4:3", when="+tests")
     depends_on("benchmark@1.8~performance_counters", when="+benchmarks")
     depends_on("onnx@1.16:", when="+onnxrt")
+    depends_on("py-onnxruntime@1.17.1:", when="+onnxrt")
     depends_on("doxygen@1.8:1.12+graphviz", when="+docs")
 
     patch(