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r-kegg-db: mark deprecated, removed from bioconductor-3.13 (#28271)

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Glenn Johnson 2022-01-07 12:17:36 -06:00 committed by GitHub
parent 7bed76786d
commit 5091dc2124
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1 changed files with 5 additions and 3 deletions
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var/spack/repos/builtin/packages/r-kegg-db/package.py
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@ -11,17 +11,19 @@ class RKeggDb(RPackage):
A set of annotation maps for KEGG assembled using data from KEGG."""
# NOTE: The KEGG.db package is deprecated
# NOTE: The KEGG.db package was removed in Bioconductor-3.13
homepage = "https://www.bioconductor.org/packages/KEGG.db/"
url = "https://www.bioconductor.org/packages/release/data/annotation/src/contrib/KEGG.db_3.2.3.tar.gz"
version('3.2.4',
sha256='2e60d1b664cbd1491cc00ed13a22904706c5a4651150f70daca04bf3ba9ead88',
url='https://bioconductor.org/packages/3.12/data/annotation/src/contrib/KEGG.db_3.2.4.tar.gz')
url='https://bioconductor.org/packages/3.12/data/annotation/src/contrib/KEGG.db_3.2.4.tar.gz',
deprecated=True)
version('3.2.3',
sha256='02ea4630a3ec06a8d9a6151627c96d3f71dfc7e8857800bb5c0cdb6a838d6963',
url='https://bioconductor.org/packages/3.10/data/annotation/src/contrib/KEGG.db_3.2.3.tar.gz')
url='https://bioconductor.org/packages/3.10/data/annotation/src/contrib/KEGG.db_3.2.3.tar.gz',
deprecated=True)
depends_on('r@2.7.0:', type=('build', 'run'))
depends_on('r-annotationdbi@1.34.3:', type=('build', 'run'))