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Merge remote-tracking branch 'upstream/develop' into efischer/160630-StagedPackage

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# Conflicts:
#	lib/spack/docs/packaging_guide.rst
#	lib/spack/spack/package.py

Mostly minor/formatting issues in lib/spack/spack/package.py (the heavyweight merge was already done recently).  Only one serious issue: it looks like the feature branch had accidentally deleted the line `spack.hooks.post_install(self)`.  This got added back in from develop.
This commit is contained in:
Elizabeth Fischer
2016-06-30 09:13:24 -04:00
parent efa506b235 0e422dec8c
commit 50ac98bc04
761 changed files with 32429 additions and 5624 deletions
Download Patch File Download Diff File Expand all files Collapse all files

38
var/spack/repos/builtin/packages/ImageMagick/package.py
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@@ -1,10 +1,35 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Imagemagick(Package):
"""ImageMagick is a image processing library"""
homepage = "http://www.imagemagic.org"
#-------------------------------------------------------------------------
# -------------------------------------------------------------------------
# ImageMagick does not keep around anything but *-10 versions, so
# this URL may change. If you want the bleeding edge, you can
# uncomment it and see if it works but you may need to try to
@@ -17,14 +42,16 @@ class Imagemagick(Package):
# version('6.9.0-6', 'c1bce7396c22995b8bdb56b7797b4a1b',
# url="http://www.imagemagick.org/download/ImageMagick-6.9.0-6.tar.bz2")
#-------------------------------------------------------------------------
# -------------------------------------------------------------------------
# *-10 versions are archived, so these versions should fetch reliably.
# -------------------------------------------------------------------------
version('6.8.9-10', 'aa050bf9785e571c956c111377bbf57c',
url="http://sourceforge.net/projects/imagemagick/files/old-sources/6.x/6.8/ImageMagick-6.8.9-10.tar.gz/download")
version(
'6.8.9-10',
'aa050bf9785e571c956c111377bbf57c',
url="http://sourceforge.net/projects/imagemagick/files/old-sources/6.x/6.8/ImageMagick-6.8.9-10.tar.gz/download")
depends_on('libtool')
depends_on('jpeg')
depends_on('libtool')
depends_on('libpng')
depends_on('freetype')
depends_on('fontconfig')
@@ -32,6 +59,5 @@ class Imagemagick(Package):
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

39
var/spack/repos/builtin/packages/LuaJIT/package.py Normal file
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@@ -0,0 +1,39 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
import os
from spack import *
class Luajit(Package):
"""Flast flexible JITed lua"""
homepage = "http://www.luajit.org"
url = "http://luajit.org/download/LuaJIT-2.0.4.tar.gz"
version('2.0.4', 'dd9c38307f2223a504cbfb96e477eca0')
def install(self, spec, prefix):
# Linking with the C++ compiler is a dirty hack to deal with the fact
# that unwinding symbols are not included by libc, this is necessary
# on some platforms for the final link stage to work
make("install", "PREFIX=" + prefix, "TARGET_LD=" + os.environ['CXX'])

31
var/spack/repos/builtin/packages/Mitos/package.py
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@@ -1,19 +1,42 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Mitos(Package):
"""Mitos is a library and a tool for collecting sampled memory
performance data to view with MemAxes"""
homepage = "https://github.com/llnl/Mitos"
url = "https://github.com/llnl/Mitos"
url = "https://github.com/llnl/Mitos"
version('0.9.2',
git='https://github.com/llnl/Mitos.git',
commit='8cb143a2e8c00353ff531a781a9ca0992b0aaa3d')
version('0.9.1',
git='https://github.com/llnl/Mitos.git',
tag='v0.9.1')
version('0.9.1', git='https://github.com/llnl/Mitos.git', tag='v0.9.1')
depends_on('dyninst@8.2.1:')
depends_on('hwloc')

102
var/spack/repos/builtin/packages/R/package.py
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@@ -1,15 +1,46 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
import os
from spack import *
from spack.util.environment import *
class R(Package):
"""
R is 'GNU S', a freely available language and environment for statistical computing and graphics which provides a
wide variety of statistical and graphical techniques: linear and nonlinear modelling, statistical tests, time series
analysis, classification, clustering, etc. Please consult the R project homepage for further information.
"""
"""R is 'GNU S', a freely available language and environment for
statistical computing and graphics which provides a wide variety of
statistical and graphical techniques: linear and nonlinear modelling,
statistical tests, time series analysis, classification, clustering, etc.
Please consult the R project homepage for further information."""
homepage = "https://www.r-project.org"
url = "http://cran.cnr.berkeley.edu/src/base/R-3/R-3.1.2.tar.gz"
extendable = True
version('3.3.0', '5a7506c8813432d1621c9725e86baf7a')
version('3.2.3', '1ba3dac113efab69e706902810cc2970')
version('3.2.2', '57cef5c2e210a5454da1979562a10e5b')
version('3.2.1', 'c2aac8b40f84e08e7f8c9068de9239a3')
@@ -17,7 +48,8 @@ class R(Package):
version('3.1.3', '53a85b884925aa6b5811dfc361d73fc4')
version('3.1.2', '3af29ec06704cbd08d4ba8d69250ae74')
variant('external-lapack', default=False, description='Links to externally installed BLAS/LAPACK')
variant('external-lapack', default=False,
description='Links to externally installed BLAS/LAPACK')
# Virtual dependencies
depends_on('blas', when='+external-lapack')
@@ -29,6 +61,7 @@ class R(Package):
depends_on('icu')
depends_on('glib')
depends_on('zlib')
depends_on('bzip2')
depends_on('libtiff')
depends_on('jpeg')
depends_on('cairo')
@@ -36,14 +69,61 @@ class R(Package):
depends_on('freetype')
depends_on('tcl')
depends_on('tk')
depends_on('curl')
depends_on('pcre')
depends_on('jdk')
def install(self, spec, prefix):
options = ['--prefix=%s' % prefix,
'--enable-R-shlib',
'--enable-BLAS-shlib']
rlibdir = join_path(prefix, 'rlib')
configure_args = ['--prefix=%s' % prefix,
'--libdir=%s' % rlibdir,
'--enable-R-shlib',
'--enable-BLAS-shlib',
'--enable-R-framework=no']
if '+external-lapack' in spec:
options.extend(['--with-blas', '--with-lapack'])
configure_args.extend(['--with-blas', '--with-lapack'])
configure(*options)
configure(*configure_args)
make()
make('install')
# ========================================================================
# Set up environment to make install easy for R extensions.
# ========================================================================
@property
def r_lib_dir(self):
return os.path.join('rlib', 'R', 'library')
def setup_dependent_environment(self, spack_env, run_env, extension_spec):
# Set R_LIBS to include the library dir for the
# extension and any other R extensions it depends on.
r_libs_path = []
for d in extension_spec.traverse():
if d.package.extends(self.spec):
r_libs_path.append(os.path.join(d.prefix, self.r_lib_dir))
r_libs_path = ':'.join(r_libs_path)
spack_env.set('R_LIBS', r_libs_path)
# For run time environment set only the path for extension_spec and
# prepend it to R_LIBS
if extension_spec.package.extends(self.spec):
run_env.prepend_path('R_LIBS', os.path.join(
extension_spec.prefix, self.r_lib_dir))
def setup_dependent_package(self, module, ext_spec):
"""Called before R modules' install() methods. In most cases,
extensions will only need to have one line:
R('CMD', 'INSTALL', '--library=%s' % self.module.r_lib_dir, '%s' %
self.stage.source_path)"""
# R extension builds can have a global R executable function
module.R = Executable(join_path(self.spec.prefix.bin, 'R'))
# Add variable for library directry
module.r_lib_dir = os.path.join(ext_spec.prefix, self.r_lib_dir)
# Make the site packages directory for extensions, if it does not exist
# already.
if ext_spec.package.is_extension:
mkdirp(module.r_lib_dir)

24
var/spack/repos/builtin/packages/SAMRAI/package.py
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@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Samrai(Package):

24
var/spack/repos/builtin/packages/activeharmony/package.py
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@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Activeharmony(Package):

16
var/spack/repos/builtin/packages/adept-utils/package.py
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@@ -1,26 +1,26 @@
##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *

41
var/spack/repos/builtin/packages/adios/package.py Normal file
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@@ -0,0 +1,41 @@
import os
from spack import *
class Adios(Package):
"""
The Adaptable IO System (ADIOS) provides a simple,
flexible way for scientists to describe the
data in their code that may need to be written,
read, or processed outside of the running simulation
"""
homepage = "http://www.olcf.ornl.gov/center-projects/adios/"
url = "http://users.nccs.gov/~pnorbert/adios-1.9.0.tar.gz"
version('1.9.0', 'dbf5cb10e32add2f04c9b4052b7ffa76')
# Lots of setting up here for this package
# module swap PrgEnv-intel PrgEnv-$COMP
# module load cray-netcdf/4.3.3.1
# module load cray-hdf5/1.8.14
# module load python/2.7.10
depends_on('hdf5')
depends_on('mxml')
def install(self, spec, prefix):
configure_args = ["--prefix=%s" % prefix,
"--with-mxml=%s" % spec['mxml'].prefix,
"--with-hdf5=%s" % spec['hdf5'].prefix,
"--with-netcdf=%s" % os.environ["NETCDF_DIR"],
"--with-infiniband=no",
"MPICC=cc", "MPICXX=CC", "MPIFC=ftn",
"CPPFLAGS=-DMPICH_IGNORE_CXX_SEEK"]
if spec.satisfies('%gcc'):
configure_args.extend(["CC=gcc", "CXX=g++", "FC=gfortran"])
configure(*configure_args)
make()
make("install")

13
var/spack/repos/builtin/packages/adol-c/openmp_exam.patch Normal file
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@@ -0,0 +1,13 @@
diff --git a/ADOL-C/examples/additional_examples/openmp_exam/liborpar.cpp b/ADOL-C/examples/additional_examples/openmp_exam/liborpar.cpp
index fc6fc28..14103d2 100644
--- a/ADOL-C/examples/additional_examples/openmp_exam/liborpar.cpp
+++ b/ADOL-C/examples/additional_examples/openmp_exam/liborpar.cpp
@@ -27,7 +27,7 @@ using namespace std;
#include <ctime>
#include <cmath>
-#include "adolc.h"
+#include <adolc/adolc.h>
#ifdef _OPENMP
#include <omp.h>

104
var/spack/repos/builtin/packages/adol-c/package.py Normal file
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@@ -0,0 +1,104 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
import sys
class AdolC(Package):
"""A package for the automatic differentiation of first and higher derivatives of vector functions in C and C++ programs by operator overloading."""
homepage = "https://projects.coin-or.org/ADOL-C"
url = "http://www.coin-or.org/download/source/ADOL-C/ADOL-C-2.6.1.tgz"
version('head', svn='https://projects.coin-or.org/svn/ADOL-C/trunk/')
version('2.6.1', '1032b28427d6e399af4610e78c0f087b')
variant('doc', default=True, description='Install documentation')
variant('openmp', default=False, description='Enable OpenMP support')
variant('sparse', default=False, description='Enable sparse drivers')
variant('tests', default=True, description='Build all included examples as a test case')
patch('openmp_exam.patch')
def install(self, spec, prefix):
make_args = ['--prefix=%s' % prefix]
# --with-cflags=FLAGS use CFLAGS=FLAGS (default: -O3 -Wall -ansi)
# --with-cxxflags=FLAGS use CXXFLAGS=FLAGS (default: -O3 -Wall)
if '+openmp' in spec:
if spec.satisfies('%gcc'):
make_args.extend([
'--with-openmp-flag=-fopenmp' # FIXME: Is this required? -I <path to omp.h> -L <LLVM OpenMP library path>
])
else:
raise InstallError("OpenMP flags for compilers other than GCC are not implemented.")
if '+sparse' in spec:
make_args.extend([
'--enable-sparse'
])
# We can simply use the bundled examples to check
# whether Adol-C works as expected
if '+tests' in spec:
make_args.extend([
'--enable-docexa', # Documeted examples
'--enable-addexa' # Additional examples
])
if '+openmp' in spec:
make_args.extend([
'--enable-parexa' # Parallel examples
])
configure(*make_args)
make()
make("install")
# Copy the config.h file, as some packages might require it
source_directory = self.stage.source_path
config_h = join_path(source_directory,'ADOL-C','src','config.h')
install(config_h, join_path(prefix.include,'adolc'))
# Install documentation to {prefix}/share
if '+doc' in spec:
install_tree(join_path('ADOL-C','doc'),
join_path(prefix.share,'doc'))
# Install examples to {prefix}/share
if '+tests' in spec:
install_tree(join_path('ADOL-C','examples'),
join_path(prefix.share,'examples'))
# Run some examples that don't require user input
# TODO: Check that bundled examples produce the correct results
with working_dir(join_path(source_directory,'ADOL-C','examples')):
Executable('./tapeless_scalar')()
Executable('./tapeless_vector')()
with working_dir(join_path(source_directory,'ADOL-C','examples','additional_examples')):
Executable('./checkpointing/checkpointing')()
if '+openmp' in spec:
with working_dir(join_path(source_directory,'ADOL-C','examples','additional_examples')):
Executable('./checkpointing/checkpointing')()

52
var/spack/repos/builtin/packages/allinea-forge/package.py Normal file
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@@ -0,0 +1,52 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class AllineaForge(Package):
"""Allinea Forge is the complete toolsuite for software development - with
everything needed to debug, profile, optimize, edit and build C, C++ and
Fortran applications on Linux for high performance - from single threads
through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA."""
homepage = "http://www.allinea.com/products/develop-allinea-forge"
version('6.0.4', 'df7f769975048477a36f208d0cd57d7e')
# Licensing
license_required = True
license_comment = '#'
license_files = ['licences/Licence']
license_vars = ['ALLINEA_LICENCE_FILE', 'ALLINEA_LICENSE_FILE']
license_url = 'http://www.allinea.com/user-guide/forge/Installation.html'
def url_for_version(self, version):
# TODO: add support for other architectures/distributions
url = "http://content.allinea.com/downloads/"
return url + "allinea-forge-%s-Redhat-6.0-x86_64.tar" % version
def install(self, spec, prefix):
textinstall = which('textinstall.sh')
textinstall('--accept-licence', prefix)

52
var/spack/repos/builtin/packages/allinea-reports/package.py Normal file
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@@ -0,0 +1,52 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class AllineaReports(Package):
"""Allinea Performance Reports are the most effective way to characterize
and understand the performance of HPC application runs. One single-page
HTML report elegantly answers a range of vital questions for any HPC site
"""
homepage = "http://www.allinea.com/products/allinea-performance-reports"
version('6.0.4', '3f13b08a32682737bc05246fbb2fcc77')
# Licensing
license_required = True
license_comment = '#'
license_files = ['licences/Licence']
license_vars = ['ALLINEA_LICENCE_FILE', 'ALLINEA_LICENSE_FILE']
license_url = 'http://www.allinea.com/user-guide/reports/Installation.html'
def url_for_version(self, version):
# TODO: add support for other architectures/distributions
url = "http://content.allinea.com/downloads/"
return url + "allinea-reports-%s-Redhat-6.0-x86_64.tar" % version
def install(self, spec, prefix):
textinstall = which('textinstall.sh')
textinstall('--accept-licence', prefix)

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@@ -0,0 +1,71 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Antlr(Package):
homepage = "http://www.antlr.org"
url = "https://github.com/antlr/antlr/tarball/v2.7.7"
# NOTE: This requires that a system Java be available.
# Spack does not yet know how to install Java compilers
# Notes from http://nco.sourceforge.net/#bld
# The first steps to build (i.e., compile, for the most part) NCO from
# source code are to install the pre-requisites: ANTLR version 2.7.7
# (like this one not version 3.x or 4.x!) (required for ncap2)... ANTLR
# binaries from major distributions are pre-built with the source patch
# necessary to allow NCO to link to ANTLR... The ANTLR source file
# CharScanner.hpp must include this line: #include <cstring> or else
# ncap2 will not compile (this tarball is already patched).
version('2.7.7', '914865e853fe8e1e61a9f23d045cb4ab',
# Patched version as described above
url='http://dust.ess.uci.edu/tmp/antlr-2.7.7.tar.gz')
# Unpatched version
# url='http://dust.ess.uci.edu/nco/antlr-2.7.7.tar.gz')
variant('cxx', default=False, description='Enable ANTLR for C++')
variant('java', default=False, description='Enable ANTLR for Java')
variant('python', default=False, description='Enable ANTLR for Python')
variant('csharp', default=False, description='Enable ANTLR for Csharp')
def install(self, spec, prefix):
# Check for future enabling of variants
for v in ('+java', '+python', '+csharp'):
if v in spec:
raise Error('Illegal variant %s; for now, Spack only knows how to build antlr or antlr+cxx')
config_args = [
'--prefix=%s' % prefix,
'--%s-cxx' % ('enable' if '+cxx' in spec else 'disable'),
'--%s-java' % ('enable' if '+java' in spec else 'disable'),
'--%s-python' % ('enable' if '+python' in spec else 'disable'),
'--%s-csharp' % ('enable' if '+csharp' in spec else 'disable')]
# which('autoreconf')('-iv')
configure(*config_args)
make()
make("install")

24
var/spack/repos/builtin/packages/apex/package.py
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@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
from spack.util.environment import *

44
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@@ -0,0 +1,44 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class AprUtil(Package):
"""Apache Portable Runtime Utility"""
homepage = 'https://apr.apache.org/'
url = 'http://archive.apache.org/dist/apr/apr-util-1.5.4.tar.gz'
version('1.5.4', '866825c04da827c6e5f53daff5569f42')
depends_on('apr')
def install(self, spec, prefix):
# configure, build, install:
options = ['--prefix=%s' % prefix]
options.append('--with-apr=%s' % spec['apr'].prefix)
configure(*options)
make()
make('install')

38
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@@ -0,0 +1,38 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Apr(Package):
"""Apache portable runtime."""
homepage = 'https://apr.apache.org/'
url = 'http://archive.apache.org/dist/apr/apr-1.5.2.tar.gz'
version('1.5.2', '98492e965963f852ab29f9e61b2ad700')
def install(self, spec, prefix):
options = ['--prefix=%s' % prefix]
configure(*options)
make()
make('install')

67
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@@ -0,0 +1,67 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Armadillo(Package):
"""Armadillo is a high quality linear algebra library (matrix maths)
for the C++ language, aiming towards a good balance between speed and
ease of use."""
homepage = "http://arma.sourceforge.net/"
url = "http://sourceforge.net/projects/arma/files/armadillo-7.200.1.tar.xz"
version('7.200.1', 'ed86d6df0058979e107502e1fe3e469e')
variant('hdf5', default=False, description='Include HDF5 support')
depends_on('arpack')
depends_on('blas')
depends_on('lapack')
depends_on('superlu@5.2:')
depends_on('hdf5', when='+hdf5')
def install(self, spec, prefix):
cmake_args = [
# ARPACK support
'-DARPACK_LIBRARY={0}/libarpack.a'.format(
spec['arpack'].prefix.lib),
# BLAS support
'-DBLAS_LIBRARY={0}'.format(spec['blas'].blas_shared_lib),
# LAPACK support
'-DLAPACK_LIBRARY={0}'.format(spec['lapack'].lapack_shared_lib),
# SuperLU support
'-DSuperLU_INCLUDE_DIR={0}'.format(spec['superlu'].prefix.include),
'-DSuperLU_LIBRARY={0}/libsuperlu.a'.format(
spec['superlu'].prefix.lib64),
# HDF5 support
'-DDETECT_HDF5={0}'.format('ON' if '+hdf5' in spec else 'OFF')
]
cmake_args.extend(std_cmake_args)
cmake('.', *cmake_args)
make()
make('install')

31
var/spack/repos/builtin/packages/arpack-ng/package.py
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@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
@@ -41,10 +65,17 @@ class ArpackNg(Package):
depends_on('blas')
depends_on('lapack')
depends_on('automake')
depends_on('autoconf')
depends_on('libtool@2.4.2:')
depends_on('mpi', when='+mpi')
def install(self, spec, prefix):
# Apparently autotools are not bootstrapped
# TODO: switch to use the CMake build in the next version
# rather than bootstrapping.
which('libtoolize')()
bootstrap = Executable('./bootstrap')
options = ['--prefix=%s' % prefix]

64
var/spack/repos/builtin/packages/arpack/package.py
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@@ -1,11 +1,35 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
import os
import shutil
class Arpack(Package):
"""A collection of Fortran77 subroutines designed to solve large scale
eigenvalue problems.
"""
eigenvalue problems."""
homepage = "http://www.caam.rice.edu/software/ARPACK/"
url = "http://www.caam.rice.edu/software/ARPACK/SRC/arpack96.tar.gz"
@@ -15,27 +39,35 @@ class Arpack(Package):
depends_on('lapack')
def patch(self):
# Filter the cray makefile to make a spack one.
shutil.move('ARMAKES/ARmake.CRAY', 'ARmake.inc')
makefile = FileFilter('ARmake.inc')
# Be sure to use Spack F77 wrapper
makefile.filter('^FC.*', 'FC = f77')
makefile.filter('^FFLAGS.*', 'FFLAGS = -O2 -g')
# Section 1: Paths and Libraries
# Set up some variables.
makefile.filter('^PLAT.*', 'PLAT = ')
makefile.filter('^home.*', 'home = %s' % os.getcwd())
makefile.filter('^BLASdir.*', 'BLASdir = %s' % self.spec['blas'].prefix)
makefile.filter('^LAPACKdir.*', 'LAPACKdir = %s' % self.spec['lapack'].prefix)
# Change the build directory
makefile.filter('^home.*', 'home = %s' % os.getcwd())
# build the library in our own prefix.
makefile.filter('^ARPACKLIB.*', 'ARPACKLIB = %s/libarpack.a' % os.getcwd())
# Use external BLAS/LAPACK
makefile.filter('^BLASdir.*',
'BLASdir = %s' % self.spec['blas'].prefix)
makefile.filter('^LAPACKdir.*',
'LAPACKdir = %s' % self.spec['lapack'].prefix)
# Do not include the platform in the library name
makefile.filter('^PLAT.*', 'PLAT = ')
makefile.filter('^ARPACKLIB.*', 'ARPACKLIB = $(home)/libarpack.a')
# Section 2: Compilers
# Be sure to use the Spack compiler wrapper
makefile.filter('^FC.*', 'FC = {0}'.format(os.environ['F77']))
makefile.filter('^FFLAGS.*', 'FFLAGS = -O2 -g -fPIC')
if not which('ranlib'):
makefile.filter('^RANLIB.*', 'RANLIB = touch')
def install(self, spec, prefix):
with working_dir('SRC'):
make('all')
mkdirp(prefix.lib)
mkdir(prefix.lib)
install('libarpack.a', prefix.lib)

24
var/spack/repos/builtin/packages/asciidoc/package.py
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@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Asciidoc(Package):

52
var/spack/repos/builtin/packages/astyle/package.py Normal file
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@@ -0,0 +1,52 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Astyle(Package):
"""
A Free, Fast, and Small Automatic Formatter for C, C++, C++/CLI,
Objective-C, C#, and Java Source Code.
"""
homepage = "http://astyle.sourceforge.net/"
url = "http://downloads.sourceforge.net/project/astyle/astyle/astyle%202.04/astyle_2.04_linux.tar.gz"
version('2.04', '30b1193a758b0909d06e7ee8dd9627f6')
def install(self, spec, prefix):
with working_dir('src'):
# we need to edit the makefile in place to set compiler:
make_file = join_path(self.stage.source_path,
'build', 'gcc', 'Makefile')
filter_file(r'^CXX\s*=.*', 'CXX=%s' % spack_cxx, make_file)
make('-f',
make_file,
parallel=False)
mkdirp(self.prefix.bin)
install(join_path(self.stage.source_path, 'src', 'bin', 'astyle'),
self.prefix.bin)

24
var/spack/repos/builtin/packages/atk/package.py
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@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Atk(Package):

24
var/spack/repos/builtin/packages/atlas/package.py
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@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
from spack.util.executable import Executable
import os.path

24
var/spack/repos/builtin/packages/atop/package.py
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@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Atop(Package):

52
var/spack/repos/builtin/packages/autoconf/package.py
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@@ -1,15 +1,59 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Autoconf(Package):
"""Autoconf -- system configuration part of autotools"""
homepage = "https://www.gnu.org/software/autoconf/"
url = "http://ftp.gnu.org/gnu/autoconf/autoconf-2.69.tar.gz"
"""
Autoconf -- system configuration part of autotools
"""
homepage = 'https://www.gnu.org/software/autoconf/'
url = 'http://ftp.gnu.org/gnu/autoconf/autoconf-2.69.tar.gz'
version('2.69', '82d05e03b93e45f5a39b828dc9c6c29b')
version('2.62', '6c1f3b3734999035d77da5024aab4fbd')
depends_on('m4')
def _make_executable(self, name):
return Executable(join_path(self.prefix.bin, name))
def setup_dependent_package(self, module, dependent_spec):
# Autoconf is very likely to be a build dependency,
# so we add the tools it provides to the dependent module
executables = ['autoconf',
'autoheader',
'autom4te',
'autoreconf',
'autoscan',
'autoupdate',
'ifnames']
for name in executables:
setattr(module, name, self._make_executable(name))
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

16
var/spack/repos/builtin/packages/automaded/package.py
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@@ -1,26 +1,26 @@
##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *

44
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@@ -1,9 +1,36 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Automake(Package):
"""Automake -- make file builder part of autotools"""
homepage = "http://www.gnu.org/software/automake/"
url = "http://ftp.gnu.org/gnu/automake/automake-1.14.tar.gz"
"""
Automake -- make file builder part of autotools
"""
homepage = 'http://www.gnu.org/software/automake/'
url = 'http://ftp.gnu.org/gnu/automake/automake-1.14.tar.gz'
version('1.15', '716946a105ca228ab545fc37a70df3a3')
version('1.14.1', 'd052a3e884631b9c7892f2efce542d75')
@@ -11,8 +38,17 @@ class Automake(Package):
depends_on('autoconf')
def _make_executable(self, name):
return Executable(join_path(self.prefix.bin, name))
def setup_dependent_package(self, module, dependent_spec):
# Automake is very likely to be a build dependency,
# so we add the tools it provides to the dependent module
executables = ['aclocal', 'automake']
for name in executables:
setattr(module, name, self._make_executable(name))
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

44
var/spack/repos/builtin/packages/bash/package.py Normal file
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@@ -0,0 +1,44 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Bash(Package):
"""The GNU Project's Bourne Again SHell."""
homepage = "https://www.gnu.org/software/bash/"
url = "ftp://ftp.gnu.org/gnu/bash/bash-4.3.tar.gz"
version('4.3', '81348932d5da294953e15d4814c74dd1')
depends_on('readline')
def install(self, spec, prefix):
configure('--prefix=%s' % prefix,
'--with-curses',
'--with-installed-readline=%s' % spec['readline'].prefix)
make()
make("tests")
make("install")

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@@ -0,0 +1,41 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Bbcp(Package):
"""Securely and quickly copy data from source to target"""
homepage = "http://www.slac.stanford.edu/~abh/bbcp/"
version('git', git='http://www.slac.stanford.edu/~abh/bbcp/bbcp.git', branch="master")
def install(self, spec, prefix):
cd("src")
make()
# BBCP wants to build the executable in a directory whose name depends on the system type
makesname = Executable("../MakeSname")
bbcp_executable_path = "../bin/%s/bbcp" % makesname(output=str).rstrip("\n")
destination_path = "%s/bin/" % prefix
mkdirp(destination_path)
install(bbcp_executable_path, destination_path)

24
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@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Bear(Package):

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@@ -0,0 +1,50 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Bertini(Package):
"""Bertini is a general-purpose solver, written in C, that was created
for research about polynomial continuation. It solves for the numerical
solution of systems of polynomial equations using homotopy continuation."""
homepage = "https://bertini.nd.edu/"
url = "https://bertini.nd.edu/BertiniSource_v1.5.tar.gz"
version('1.5', 'e3f6cc6e7f9a0cf1d73185e8671af707')
variant('mpi', default=True, description='Compile in parallel')
depends_on('flex')
depends_on('bison')
depends_on('gmp')
depends_on('mpfr')
depends_on('mpi', when='+mpi')
def install(self, spec, prefix):
configure('--prefix=%s' % prefix)
make()
make("install")

24
var/spack/repos/builtin/packages/bib2xhtml/package.py
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@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
from glob import glob

44
var/spack/repos/builtin/packages/binutils/package.py
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@@ -1,23 +1,56 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Binutils(Package):
"""GNU binutils, which contain the linker, assembler, objdump and others"""
homepage = "http://www.gnu.org/software/binutils/"
url = "https://ftp.gnu.org/gnu/binutils/binutils-2.25.tar.bz2"
url="https://ftp.gnu.org/gnu/binutils/binutils-2.25.tar.bz2"
# 2.26 is incompatible with py-pillow build for some reason.
version('2.26', '64146a0faa3b411ba774f47d41de239f')
version('2.25', 'd9f3303f802a5b6b0bb73a335ab89d66')
version('2.25', 'd9f3303f802a5b6b0bb73a335ab89d66', preferred=True)
version('2.24', 'e0f71a7b2ddab0f8612336ac81d9636b')
version('2.23.2', '4f8fa651e35ef262edc01d60fb45702e')
version('2.20.1', '2b9dc8f2b7dbd5ec5992c6e29de0b764')
# Add a patch that creates binutils libiberty_pic.a which is preferred by OpenSpeedShop and cbtf-krell
variant('krellpatch', default=False, description="build with openspeedshop based patch.")
depends_on('m4')
depends_on('flex')
depends_on('bison')
# Add a patch that creates binutils libiberty_pic.a which is preferred by
# OpenSpeedShop and cbtf-krell
variant('krellpatch', default=False,
description="build with openspeedshop based patch.")
variant('gold', default=True, description="build the gold linker")
patch('binutilskrell-2.24.patch', when='@2.24+krellpatch')
patch('cr16.patch')
patch('update_symbol-2.26.patch', when='@2.26')
variant('libiberty', default=False, description='Also install libiberty.')
@@ -25,6 +58,7 @@ def install(self, spec, prefix):
configure_args = [
'--prefix=%s' % prefix,
'--disable-dependency-tracking',
'--disable-werror',
'--enable-interwork',
'--enable-multilib',
'--enable-shared',

104
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@@ -0,0 +1,104 @@
From 544ddf9322b1b83982e5cb84a54d084ee7e718ea Mon Sep 17 00:00:00 2001
From: H.J. Lu <hjl.tools@gmail.com>
Date: Wed, 24 Feb 2016 15:13:35 -0800
Subject: [PATCH] Update symbol version for symbol from linker script
We need to update symbol version for symbols from linker script.
Backport from master
bfd/
PR ld/19698
* elflink.c (bfd_elf_record_link_assignment): Set versioned if
symbol version is unknown.
ld/
PR ld/19698
* testsuite/ld-elf/pr19698.d: New file.
* testsuite/ld-elf/pr19698.s: Likewise.
* testsuite/ld-elf/pr19698.t: Likewise.
---
bfd/ChangeLog | 9 +++++++++
bfd/elflink.c | 13 +++++++++++++
ld/ChangeLog | 10 ++++++++++
ld/testsuite/ld-elf/pr19698.d | 10 ++++++++++
ld/testsuite/ld-elf/pr19698.s | 5 +++++
ld/testsuite/ld-elf/pr19698.t | 11 +++++++++++
6 files changed, 58 insertions(+), 0 deletions(-)
create mode 100644 ld/testsuite/ld-elf/pr19698.d
create mode 100644 ld/testsuite/ld-elf/pr19698.s
create mode 100644 ld/testsuite/ld-elf/pr19698.t
diff --git a/bfd/elflink.c b/bfd/elflink.c
index ae8d148..8fcaadd 100644
--- a/bfd/elflink.c
+++ b/bfd/elflink.c
@@ -555,6 +555,19 @@ bfd_elf_record_link_assignment (bfd *output_bfd,
if (h == NULL)
return provide;
+ if (h->versioned == unknown)
+ {
+ /* Set versioned if symbol version is unknown. */
+ char *version = strrchr (name, ELF_VER_CHR);
+ if (version)
+ {
+ if (version > name && version[-1] != ELF_VER_CHR)
+ h->versioned = versioned_hidden;
+ else
+ h->versioned = versioned;
+ }
+ }
+
switch (h->root.type)
{
case bfd_link_hash_defined:
diff --git a/ld/testsuite/ld-elf/pr19698.d b/ld/testsuite/ld-elf/pr19698.d
new file mode 100644
index 0000000..a39f67a
--- /dev/null
+++ b/ld/testsuite/ld-elf/pr19698.d
@@ -0,0 +1,10 @@
+#ld: -shared $srcdir/$subdir/pr19698.t
+#readelf : --dyn-syms --wide
+#target: *-*-linux* *-*-gnu* *-*-solaris*
+
+Symbol table '\.dynsym' contains [0-9]+ entries:
+#...
+ +[0-9]+: +[0-9a-f]+ +[0-9a-f]+ +FUNC +GLOBAL +DEFAULT +[0-9]+ +foo@VERS.1
+#...
+ +[0-9]+: +[0-9a-f]+ +[0-9a-f]+ +FUNC +GLOBAL +DEFAULT +[0-9]+ +foo@@VERS.2
+#pass
diff --git a/ld/testsuite/ld-elf/pr19698.s b/ld/testsuite/ld-elf/pr19698.s
new file mode 100644
index 0000000..875dca4
--- /dev/null
+++ b/ld/testsuite/ld-elf/pr19698.s
@@ -0,0 +1,5 @@
+ .text
+ .globl foo
+ .type foo, %function
+foo:
+ .byte 0
diff --git a/ld/testsuite/ld-elf/pr19698.t b/ld/testsuite/ld-elf/pr19698.t
new file mode 100644
index 0000000..09d9125
--- /dev/null
+++ b/ld/testsuite/ld-elf/pr19698.t
@@ -0,0 +1,11 @@
+"foo@VERS.1" = foo;
+
+VERSION {
+VERS.2 {
+ global:
+ foo;
+};
+
+VERS.1 {
+};
+}
--
1.7.1

26
var/spack/repos/builtin/packages/bison/package.py
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@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Bison(Package):
@@ -10,6 +34,8 @@ class Bison(Package):
version('3.0.4', 'a586e11cd4aff49c3ff6d3b6a4c9ccf8')
depends_on("m4")
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)

24
var/spack/repos/builtin/packages/blitz/package.py
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@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Blitz(Package):

147
var/spack/repos/builtin/packages/boost/package.py
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@@ -1,5 +1,32 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
import spack
import sys
import os
class Boost(Package):
"""Boost provides free peer-reviewed portable C++ source
@@ -15,6 +42,7 @@ class Boost(Package):
list_url = "http://sourceforge.net/projects/boost/files/boost/"
list_depth = 2
version('1.61.0', '6095876341956f65f9d35939ccea1a9f')
version('1.60.0', '65a840e1a0b13a558ff19eeb2c4f0cbe')
version('1.59.0', '6aa9a5c6a4ca1016edd0ed1178e3cb87')
version('1.58.0', 'b8839650e61e9c1c0a89f371dd475546')
@@ -45,34 +73,35 @@ class Boost(Package):
version('1.34.1', '2d938467e8a448a2c9763e0a9f8ca7e5')
version('1.34.0', 'ed5b9291ffad776f8757a916e1726ad0')
default_install_libs = set(['atomic',
'chrono',
'date_time',
'filesystem',
'graph',
'iostreams',
'locale',
'log',
'math',
'program_options',
'random',
'regex',
'serialization',
'signals',
'system',
'test',
'thread',
'wave'])
default_install_libs = set(['atomic',
'chrono',
'date_time',
'filesystem',
'graph',
'iostreams',
'locale',
'log',
'math',
'program_options',
'random',
'regex',
'serialization',
'signals',
'system',
'test',
'thread',
'timer',
'wave'])
# mpi/python are not installed by default because they pull in many
# dependencies and/or because there is a great deal of customization
# mpi/python are not installed by default because they pull in many
# dependencies and/or because there is a great deal of customization
# possible (and it would be difficult to choose sensible defaults)
default_noinstall_libs = set(['mpi', 'python'])
all_libs = default_install_libs | default_noinstall_libs
for lib in all_libs:
variant(lib, default=(lib not in default_noinstall_libs),
variant(lib, default=(lib not in default_noinstall_libs),
description="Compile with {0} library".format(lib))
variant('debug', default=False, description='Switch to the debug version of Boost')
@@ -80,6 +109,7 @@ class Boost(Package):
variant('multithreaded', default=True, description="Build multi-threaded versions of libraries")
variant('singlethreaded', default=True, description="Build single-threaded versions of libraries")
variant('icu_support', default=False, description="Include ICU support (for regex/locale libraries)")
variant('graph', default=False, description="Build the Boost Graph library")
depends_on('icu', when='+icu_support')
depends_on('python', when='+python')
@@ -91,15 +121,18 @@ class Boost(Package):
patch('boost_11856.patch', when='@1.60.0%gcc@4.4.7')
def url_for_version(self, version):
"""Handle Boost's weird URLs, which write the version two different ways."""
"""
Handle Boost's weird URLs,
which write the version two different ways.
"""
parts = [str(p) for p in Version(version)]
dots = ".".join(parts)
underscores = "_".join(parts)
return "http://downloads.sourceforge.net/project/boost/boost/%s/boost_%s.tar.bz2" % (
dots, underscores)
return "http://downloads.sourceforge.net/project/boost" \
"/boost/%s/boost_%s.tar.bz2" % (dots, underscores)
def determine_toolset(self, spec):
if spec.satisfies("=darwin-x86_64"):
if spec.satisfies("platform=darwin"):
return 'darwin'
toolsets = {'g++': 'gcc',
@@ -120,20 +153,20 @@ def determine_bootstrap_options(self, spec, withLibs, options):
if '+python' in spec:
options.append('--with-python=%s' %
join_path(spec['python'].prefix.bin, 'python'))
join_path(spec['python'].prefix.bin, 'python'))
with open('user-config.jam', 'w') as f:
compiler_wrapper = join_path(spack.build_env_path, 'c++')
f.write("using {0} : : {1} ;\n".format(boostToolsetId,
compiler_wrapper))
f.write("using {0} : : {1} ;\n".format(boostToolsetId,
compiler_wrapper))
if '+mpi' in spec:
f.write('using mpi : %s ;\n' %
join_path(spec['mpi'].prefix.bin, 'mpicxx'))
join_path(spec['mpi'].prefix.bin, 'mpicxx'))
if '+python' in spec:
f.write('using python : %s : %s ;\n' %
(spec['python'].version,
join_path(spec['python'].prefix.bin, 'python')))
(spec['python'].version,
join_path(spec['python'].prefix.bin, 'python')))
def determine_b2_options(self, spec, options):
if '+debug' in spec:
@@ -149,42 +182,68 @@ def determine_b2_options(self, spec, options):
'-s', 'BZIP2_INCLUDE=%s' % spec['bzip2'].prefix.include,
'-s', 'BZIP2_LIBPATH=%s' % spec['bzip2'].prefix.lib,
'-s', 'ZLIB_INCLUDE=%s' % spec['zlib'].prefix.include,
'-s', 'ZLIB_LIBPATH=%s' % spec['zlib'].prefix.lib,
])
'-s', 'ZLIB_LIBPATH=%s' % spec['zlib'].prefix.lib])
linkTypes = ['static']
if '+shared' in spec:
linkTypes.append('shared')
threadingOpts = []
if '+multithreaded' in spec:
threadingOpts.append('multi')
if '+singlethreaded' in spec:
threadingOpts.append('single')
if not threadingOpts:
raise RuntimeError("At least one of {singlethreaded, multithreaded} must be enabled")
raise RuntimeError("""At least one of {singlethreaded,
multithreaded} must be enabled""")
options.extend([
'toolset=%s' % self.determine_toolset(spec),
'link=%s' % ','.join(linkTypes),
'--layout=tagged'])
return threadingOpts
def install(self, spec, prefix):
# On Darwin, Boost expects the Darwin libtool. However, one of the
# dependencies may have pulled in Spack's GNU libtool, and these two
# are not compatible. We thus create a symlink to Darwin's libtool
# and add it at the beginning of PATH.
if sys.platform == 'darwin':
newdir = os.path.abspath('darwin-libtool')
mkdirp(newdir)
force_symlink('/usr/bin/libtool', join_path(newdir, 'libtool'))
env['PATH'] = newdir + ':' + env['PATH']
withLibs = list()
for lib in Boost.all_libs:
if "+{0}".format(lib) in spec:
withLibs.append(lib)
if not withLibs:
# if no libraries are specified for compilation, then you dont have
# to configure/build anything, just copy over to the prefix directory.
# if no libraries are specified for compilation, then you dont have
# to configure/build anything, just copy over to the prefix
# directory.
src = join_path(self.stage.source_path, 'boost')
mkdirp(join_path(prefix, 'include'))
dst = join_path(prefix, 'include', 'boost')
install_tree(src, dst)
return
# Remove libraries that the release version does not support
if not spec.satisfies('@1.54.0:'):
withLibs.remove('log')
if not spec.satisfies('@1.53.0:'):
withLibs.remove('atomic')
if not spec.satisfies('@1.48.0:'):
withLibs.remove('locale')
if not spec.satisfies('@1.47.0:'):
withLibs.remove('chrono')
if not spec.satisfies('@1.43.0:'):
withLibs.remove('random')
if '+graph' in spec and '+mpi' in spec:
withLibs.remove('graph')
withLibs.append('graph_parallel')
# to make Boost find the user-config.jam
env['BOOST_BUILD_PATH'] = './'
@@ -207,4 +266,8 @@ def install(self, spec, prefix):
# Boost.MPI if the threading options are not separated.
for threadingOpt in threadingOpts:
b2('install', 'threading=%s' % threadingOpt, *b2_options)
# The shared libraries are not installed correctly
# on Darwin; correct this
if (sys.platform == 'darwin') and ('+shared' in spec):
fix_darwin_install_name(prefix.lib)

24
var/spack/repos/builtin/packages/bowtie2/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
from glob import glob
class Bowtie2(Package):

24
var/spack/repos/builtin/packages/boxlib/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Boxlib(Package):

24
var/spack/repos/builtin/packages/bzip2/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Bzip2(Package):

51
var/spack/repos/builtin/packages/c-blosc/package.py Normal file
View File

@@ -0,0 +1,51 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
import sys
from spack import *
class CBlosc(Package):
"""Blosc, an extremely fast, multi-threaded, meta-compressor library"""
homepage = "http://www.blosc.org"
url = "https://github.com/Blosc/c-blosc/archive/v1.9.2.tar.gz"
version('1.9.2', 'dd2d83069d74b36b8093f1c6b49defc5')
version('1.9.1', '7d708d3daadfacf984a87b71b1734ce2')
version('1.9.0', 'e4c1dc8e2c468e5cfa2bf05eeee5357a')
version('1.8.1', 'd73d5be01359cf271e9386c90dcf5b05')
version('1.8.0', '5b92ecb287695ba20cc33d30bf221c4f')
depends_on("cmake")
depends_on("snappy")
depends_on("zlib")
def install(self, spec, prefix):
cmake('.', *std_cmake_args)
make()
make("install")
if sys.platform == 'darwin':
fix_darwin_install_name(prefix.lib)

33
var/spack/repos/builtin/packages/cairo/package.py
View File

@@ -1,7 +1,33 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Cairo(Package):
"""Cairo is a 2D graphics library with support for multiple output devices."""
"""Cairo is a 2D graphics library with support for multiple output
devices."""
homepage = "http://cairographics.org"
url = "http://cairographics.org/releases/cairo-1.14.0.tar.xz"
@@ -10,11 +36,12 @@ class Cairo(Package):
depends_on("libpng")
depends_on("glib")
depends_on("pixman")
depends_on("fontconfig@2.10.91:") # Require newer version of fontconfig.
depends_on("freetype")
depends_on("fontconfig@2.10.91:") # Require newer version of fontconfig.
def install(self, spec, prefix):
configure("--prefix=%s" % prefix,
"--disable-trace", # can cause problems with libiberty
"--disable-trace", # can cause problems with libiberty
"--enable-tee")
make()
make("install")

26
var/spack/repos/builtin/packages/caliper/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Caliper(Package):
@@ -10,7 +34,7 @@ class Caliper(Package):
homepage = "https://github.com/LLNL/Caliper"
url = ""
version('master', git='ssh://git@github.com:LLNL/Caliper.git')
version('master', git='https://github.com/LLNL/Caliper.git')
variant('mpi', default=False, description='Enable MPI function wrappers.')

16
var/spack/repos/builtin/packages/callpath/package.py
View File

@@ -1,26 +1,26 @@
##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *

197
var/spack/repos/builtin/packages/cantera/package.py Normal file
View File

@@ -0,0 +1,197 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
import os
class Cantera(Package):
"""Cantera is a suite of object-oriented software tools for problems
involving chemical kinetics, thermodynamics, and/or transport processes."""
homepage = "http://www.cantera.org/docs/sphinx/html/index.html"
url = "https://github.com/Cantera/cantera/archive/v2.2.1.tar.gz"
version('2.2.1', '9d1919bdef39ddec54485fc8a741a3aa')
variant('lapack', default=True, description='Build with external BLAS/LAPACK libraries')
variant('threadsafe', default=True, description='Build threadsafe, requires Boost')
variant('sundials', default=True, description='Build with external Sundials')
variant('python', default=False, description='Build the Cantera Python module')
variant('matlab', default=False, description='Build the Cantera Matlab toolbox')
# Required dependencies
depends_on('scons')
# Recommended dependencies
depends_on('blas', when='+lapack')
depends_on('lapack', when='+lapack')
depends_on('boost', when='+threadsafe')
depends_on('sundials', when='+sundials') # must be compiled with -fPIC
# Python module dependencies
extends('python', when='+python')
depends_on('py-numpy', when='+python')
depends_on('py-scipy', when='+python')
depends_on('py-cython', when='+python')
depends_on('py-3to2', when='+python')
# TODO: these "when" specs don't actually work
# depends_on('py-unittest2', when='+python^python@2.6')
# depends_on('py-unittest2py3k', when='+python^python@3.1')
# Matlab toolbox dependencies
# TODO: add Matlab package
# TODO: allow packages to extend multiple other packages
# extends('matlab', when='+matlab')
def install(self, spec, prefix):
# Required options
options = [
'prefix={0}'.format(prefix),
'CC={0}'.format(os.environ['CC']),
'CXX={0}'.format(os.environ['CXX']),
'F77={0}'.format(os.environ['F77']),
'FORTRAN={0}'.format(os.environ['FC']),
'cc_flags=-fPIC',
# Allow Spack environment variables to propagate through to SCons
'env_vars=all'
]
# BLAS/LAPACK support
if '+lapack' in spec:
options.extend([
'blas_lapack_libs=lapack,blas',
'blas_lapack_dir={0}'.format(spec['lapack'].prefix.lib)
])
# Threadsafe build, requires Boost
if '+threadsafe' in spec:
options.extend([
'build_thread_safe=yes',
'boost_inc_dir={0}'.format(spec['boost'].prefix.include),
'boost_lib_dir={0}'.format(spec['boost'].prefix.lib),
'boost_thread_lib=boost_thread-mt,boost_system-mt'
])
else:
options.append('build_thread_safe=no')
# Sundials support
if '+sundials' in spec:
options.extend([
'use_sundials=y',
'sundials_include={0}'.format(spec['sundials'].prefix.include),
'sundials_libdir={0}'.format(spec['sundials'].prefix.lib),
'sundials_license={0}'.format(
join_path(spec['sundials'].prefix, 'LICENSE'))
])
else:
options.append('use_sundials=n')
# Python module
if '+python' in spec:
options.extend([
'python_package=full',
'python_cmd={0}'.format(
join_path(spec['python'].prefix.bin, 'python')),
'python_array_home={0}'.format(spec['py-numpy'].prefix)
])
if spec['python'].satisfies('@3'):
options.extend([
'python3_package=y',
'python3_cmd={0}'.format(
join_path(spec['python'].prefix.bin, 'python')),
'python3_array_home={0}'.format(spec['py-numpy'].prefix)
])
else:
options.append('python3_package=n')
else:
options.append('python_package=none')
options.append('python3_package=n')
# Matlab toolbox
if '+matlab' in spec:
options.extend([
'matlab_toolbox=y',
'matlab_path={0}'.format(spec['matlab'].prefix)
])
else:
options.append('matlab_toolbox=n')
scons('build', *options)
if '+python' in spec:
# Tests will always fail if Python dependencies aren't built
# In addition, 3 of the tests fail when run in parallel
scons('test', parallel=False)
scons('install')
self.filter_compilers()
def filter_compilers(self):
"""Run after install to tell the Makefile and SConstruct files to use
the compilers that Spack built the package with.
If this isn't done, they'll have CC, CXX, F77, and FC set to Spack's
generic cc, c++, f77, and f90. We want them to be bound to whatever
compiler they were built with."""
kwargs = {'ignore_absent': True, 'backup': False, 'string': True}
dirname = os.path.join(self.prefix, 'share/cantera/samples')
cc_files = [
'cxx/rankine/Makefile', 'cxx/NASA_coeffs/Makefile',
'cxx/kinetics1/Makefile', 'cxx/flamespeed/Makefile',
'cxx/combustor/Makefile', 'f77/SConstruct'
]
cxx_files = [
'cxx/rankine/Makefile', 'cxx/NASA_coeffs/Makefile',
'cxx/kinetics1/Makefile', 'cxx/flamespeed/Makefile',
'cxx/combustor/Makefile'
]
f77_files = [
'f77/Makefile', 'f77/SConstruct'
]
fc_files = [
'f90/Makefile', 'f90/SConstruct'
]
for filename in cc_files:
filter_file(os.environ['CC'], self.compiler.cc,
os.path.join(dirname, filename), **kwargs)
for filename in cxx_files:
filter_file(os.environ['CXX'], self.compiler.cxx,
os.path.join(dirname, filename), **kwargs)
for filename in f77_files:
filter_file(os.environ['F77'], self.compiler.f77,
os.path.join(dirname, filename), **kwargs)
for filename in fc_files:
filter_file(os.environ['FC'], self.compiler.fc,
os.path.join(dirname, filename), **kwargs)

24
var/spack/repos/builtin/packages/cblas/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
import os

114
var/spack/repos/builtin/packages/cbtf-argonavis/package.py
View File

@@ -1,5 +1,29 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
################################################################################
# Copyright (c) 2015 Krell Institute. All Rights Reserved.
# Copyright (c) 2015-2016 Krell Institute. All Rights Reserved.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
@@ -24,43 +48,83 @@ class CbtfArgonavis(Package):
homepage = "http://sourceforge.net/p/cbtf/wiki/Home/"
# Mirror access template example
#url = "file:/g/g24/jeg/cbtf-argonavis-1.5.tar.gz"
#version('1.5', '1f7f6512f55409ed2135cfceabe26b82')
#url = "file:/home/jeg/OpenSpeedShop_ROOT/SOURCES/cbtf-argonavis-1.6.tar.gz"
#version('1.6', '0fafa0008478405c2c2319450f174ed4')
version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf-argonavis/cbtf-argonavis')
version('1.6', branch='master', git='https://github.com/OpenSpeedShop/cbtf-argonavis.git')
depends_on("cmake@3.0.2:")
depends_on("cmake@3.0.2")
depends_on("boost@1.50.0:")
depends_on("papi")
depends_on("mrnet@5.0.1:+lwthreads+krellpatch")
depends_on("cbtf")
depends_on("cbtf-krell")
depends_on("cuda")
depends_on("cuda@6.0.37")
#depends_on("cuda")
parallel = False
def adjustBuildTypeParams_cmakeOptions(self, spec, cmakeOptions):
# Sets build type parameters into cmakeOptions the options that will enable the cbtf-krell built type settings
compile_flags="-O2 -g"
BuildTypeOptions = []
# Set CMAKE_BUILD_TYPE to what cbtf-krell wants it to be, not the stdcmakeargs
for word in cmakeOptions[:]:
if word.startswith('-DCMAKE_BUILD_TYPE'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_CXX_FLAGS'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_C_FLAGS'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_VERBOSE_MAKEFILE'):
cmakeOptions.remove(word)
BuildTypeOptions.extend([
'-DCMAKE_VERBOSE_MAKEFILE=ON',
'-DCMAKE_BUILD_TYPE=None',
'-DCMAKE_CXX_FLAGS=%s' % compile_flags,
'-DCMAKE_C_FLAGS=%s' % compile_flags
])
cmakeOptions.extend(BuildTypeOptions)
def install(self, spec, prefix):
# Look for package installation information in the cbtf and cbtf-krell prefixes
cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['cbtf-krell'].prefix)
# FIXME, hard coded for testing purposes, we will alter when the external package feature is available
cuda_prefix_path = "/usr/local/cudatoolkit-6.0"
cupti_prefix_path = "/usr/local/cudatoolkit-6.0/extras/CUPTI"
with working_dir('CUDA'):
with working_dir('build', create=True):
cmake('..',
'-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64,
'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
'-DCUDA_INSTALL_PATH=%s' % cuda_prefix_path,
'-DCUDA_ROOT=%s' % cuda_prefix_path,
'-DCUPTI_ROOT=%s' % cupti_prefix_path,
'-DCUDA_DIR=%s' % cuda_prefix_path,
'-DPAPI_ROOT=%s' % spec['papi'].prefix,
'-DCBTF_PREFIX=%s' % spec['cbtf'].prefix,
*std_cmake_args)
make("clean")
make()
make("install")
cmakeOptions = []
cmakeOptions.extend(['-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
'-DCUDA_DIR=%s' % spec['cuda'].prefix,
'-DCUDA_INSTALL_PATH=%s' % spec['cuda'].prefix,
'-DCUDA_TOOLKIT_ROOT_DIR=%s' % spec['cuda'].prefix,
'-DCUPTI_DIR=%s' % join_path(spec['cuda'].prefix + '/extras/CUPTI'),
'-DCUPTI_ROOT=%s' % join_path(spec['cuda'].prefix + '/extras/CUPTI'),
'-DPAPI_ROOT=%s' % spec['papi'].prefix,
'-DCBTF_DIR=%s' % spec['cbtf'].prefix,
'-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix,
'-DBOOST_ROOT=%s' % spec['boost'].prefix,
'-DBoost_DIR=%s' % spec['boost'].prefix,
'-DBOOST_LIBRARYDIR=%s' % spec['boost'].prefix.lib,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DBoost_NO_SYSTEM_PATHS=ON'
])
# Add in the standard cmake arguments
cmakeOptions.extend(std_cmake_args)
# Adjust the standard cmake arguments to what we want the build type, etc to be
self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions)
# Invoke cmake
cmake('..', *cmakeOptions)
make("clean")
make()
make("install")

286
var/spack/repos/builtin/packages/cbtf-krell/package.py
View File

@@ -1,5 +1,29 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
################################################################################
# Copyright (c) 2015 Krell Institute. All Rights Reserved.
# Copyright (c) 2015-2016 Krell Institute. All Rights Reserved.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
@@ -26,21 +50,30 @@ class CbtfKrell(Package):
homepage = "http://sourceforge.net/p/cbtf/wiki/Home/"
# optional mirror access template
#url = "file:/g/g24/jeg/cbtf-krell-1.5.tar.gz"
#version('1.5', 'b13f6df6a93c44149d977773dd776d2f')
#url = "file:/home/jeg/cbtf-krell-1.6.tar.gz"
#version('1.6', 'edeb61cd488f16e7b124f77db9ce762d')
version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf-krell/cbtf-krell')
version('1.6', branch='master', git='https://github.com/OpenSpeedShop/cbtf-krell.git')
# MPI variants
variant('openmpi', default=False, description="Build mpi experiment collector for openmpi MPI when this variant is enabled.")
variant('mpt', default=False, description="Build mpi experiment collector for SGI MPT MPI when this variant is enabled.")
variant('mvapich2', default=False, description="Build mpi experiment collector for mvapich2 MPI when this variant is enabled.")
variant('mvapich', default=False, description="Build mpi experiment collector for mvapich MPI when this variant is enabled.")
variant('mpich2', default=False, description="Build mpi experiment collector for mpich2 MPI when this variant is enabled.")
variant('mpich', default=False, description="Build mpi experiment collector for mpich MPI when this variant is enabled.")
# Dependencies for cbtf-krell
depends_on("cmake@3.0.2")
# For binutils service
depends_on("binutils@2.24+krellpatch")
# collectionTool
depends_on("boost@1.50.0")
depends_on("dyninst@8.2.1")
depends_on("mrnet@4.1.0:+lwthreads")
depends_on("boost@1.50.0:")
depends_on("dyninst@8.2.1:")
depends_on("mrnet@5.0.1:+lwthreads+krellpatch")
depends_on("xerces-c@3.1.1:")
depends_on("cbtf")
@@ -51,66 +84,207 @@ class CbtfKrell(Package):
# MPI Installations
# These have not worked either for build or execution, commenting out for now
#depends_on("openmpi")
#depends_on("mvapich2@2.0")
#depends_on("mpich")
depends_on("openmpi", when='+openmpi')
depends_on("mpich", when='+mpich')
depends_on("mpich2", when='+mpich2')
depends_on("mvapich2", when='+mvapich2')
depends_on("mvapich", when='+mvapich')
depends_on("mpt", when='+mpt')
parallel = False
def adjustBuildTypeParams_cmakeOptions(self, spec, cmakeOptions):
# Sets build type parameters into cmakeOptions the options that will enable the cbtf-krell built type settings
compile_flags="-O2 -g"
BuildTypeOptions = []
# Set CMAKE_BUILD_TYPE to what cbtf-krell wants it to be, not the stdcmakeargs
for word in cmakeOptions[:]:
if word.startswith('-DCMAKE_BUILD_TYPE'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_CXX_FLAGS'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_C_FLAGS'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_VERBOSE_MAKEFILE'):
cmakeOptions.remove(word)
BuildTypeOptions.extend([
'-DCMAKE_VERBOSE_MAKEFILE=ON',
'-DCMAKE_BUILD_TYPE=None',
'-DCMAKE_CXX_FLAGS=%s' % compile_flags,
'-DCMAKE_C_FLAGS=%s' % compile_flags
])
cmakeOptions.extend(BuildTypeOptions)
def set_mpi_cmakeOptions(self, spec, cmakeOptions):
# Appends to cmakeOptions the options that will enable the appropriate MPI implementations
MPIOptions = []
# openmpi
if '+openmpi' in spec:
MPIOptions.extend([
'-DOPENMPI_DIR=%s' % spec['openmpi'].prefix
])
# mpich
if '+mpich' in spec:
MPIOptions.extend([
'-DMPICH_DIR=%s' % spec['mpich'].prefix
])
# mpich2
if '+mpich2' in spec:
MPIOptions.extend([
'-DMPICH2_DIR=%s' % spec['mpich2'].prefix
])
# mvapich
if '+mvapich' in spec:
MPIOptions.extend([
'-DMVAPICH_DIR=%s' % spec['mvapich'].prefix
])
# mvapich2
if '+mvapich2' in spec:
MPIOptions.extend([
'-DMVAPICH2_DIR=%s' % spec['mvapich2'].prefix
])
# mpt
if '+mpt' in spec:
MPIOptions.extend([
'-DMPT_DIR=%s' % spec['mpt'].prefix
])
cmakeOptions.extend(MPIOptions)
def install(self, spec, prefix):
# Add in paths for finding package config files that tell us where to find these packages
cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['dyninst'].prefix)
# FIXME - hard code path until external package support is available
# Need to change this path and/or add additional paths for MPI experiment support on different platforms
#openmpi_prefix_path = "/opt/openmpi-1.8.2"
#mvapich_prefix_path = "/usr/local/tools/mvapich-gnu"
# Other possibilities, they will need a -DMVAPICH_DIR=, etc clause in the cmake command to be recognized
# mvapich_prefix_path = "<mvapich install path>"
# mvapich2_prefix_path = "<mvapich2 install path>"
# mpich2_prefix_path = "<mpich2 install path>"
# mpich_prefix_path = "<mpich install path>"
# mpt_prefix_path = "<mpt install path>"
# Add in paths for cuda if requested via the cuda variant
# FIXME - hard code path until external package support is available
#if '+cuda' in spec:
# cuda_prefix_path = "/usr/local/cuda-6.0"
# cupti_prefix_path = "/usr/local/cuda-6.0/extras/CUPTI"
#else:
# cuda_prefix_path = ""
# cupti_prefix_path = ""
#'-DMVAPICH2_DIR=%s' % spec['mvapich2'].prefix,
#'-DOPENMPI_DIR=%s' % spec['openmpi'].prefix,
#'-DMPICH_DIR=%s' % spec['mpich'].prefix,
#'-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64,
#'-DOPENMPI_DIR=%s' % openmpi_prefix_path,
#'-DMVAPICH_DIR=%s' % mvapich_prefix_path,
#'-DLIB_SUFFIX=64',
#'-DCUDA_DIR=%s' % cuda_prefix_path,
#'-DCUPTI_DIR=%s' % cupti_prefix_path,
#cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['dyninst'].prefix)
#'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path
# Build cbtf-krell with cmake
with working_dir('build_cbtf_krell', create=True):
cmake('..',
'-DCMAKE_BUILD_TYPE=Debug',
'-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DCBTF_DIR=%s' % spec['cbtf'].prefix,
'-DBINUTILS_DIR=%s' % spec['binutils'].prefix,
'-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix,
'-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix,
'-DPAPI_DIR=%s' % spec['papi'].prefix,
'-DBOOST_DIR=%s' % spec['boost'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DDYNINST_DIR=%s' % spec['dyninst'].prefix,
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
*std_cmake_args)
cmakeOptions = []
cmakeOptions.extend(['-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DCBTF_DIR=%s' % spec['cbtf'].prefix,
'-DBINUTILS_DIR=%s' % spec['binutils'].prefix,
'-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix,
'-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix,
'-DPAPI_DIR=%s' % spec['papi'].prefix,
'-DBOOST_DIR=%s' % spec['boost'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DDYNINST_DIR=%s' % spec['dyninst'].prefix,
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix
])
# Add any MPI implementations coming from variant settings
self.set_mpi_cmakeOptions(spec, cmakeOptions)
# Add in the standard cmake arguments
cmakeOptions.extend(std_cmake_args)
# Adjust the standard cmake arguments to what we want the build type, etc to be
self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions)
# Invoke cmake
cmake('..', *cmakeOptions)
make("clean")
make()
make("install")
#if '+cray' in spec:
#if 'cray' in self.spec.architecture:
# if '+runtime' in spec:
# with working_dir('build_cbtf_cray_runtime', create=True):
# python_vers='%d.%d' % spec['python'].version[:2]
# cmake .. \
# -DCMAKE_BUILD_TYPE=Debug \
# -DTARGET_OS="cray" \
# -DRUNTIME_ONLY="true" \
# -DCMAKE_INSTALL_PREFIX=${CBTF_KRELL_PREFIX} \
# -DCMAKE_PREFIX_PATH=${CBTF_ROOT} \
# -DCBTF_DIR=${CBTF_ROOT} \
# -DBOOST_ROOT=${BOOST_INSTALL_PREFIX} \
# -DXERCESC_DIR=${XERCESC_INSTALL_PREFIX} \
# -DBINUTILS_DIR=${KRELL_ROOT} \
# -DLIBMONITOR_DIR=${KRELL_ROOT_COMPUTE} \
# -DLIBUNWIND_DIR=${KRELL_ROOT_COMPUTE} \
# -DPAPI_DIR=${PAPI_ROOT} \
# -DDYNINST_DIR=${DYNINST_CN_ROOT} \
# -DMRNET_DIR=${MRNET_INSTALL_PREFIX} \
# -DMPICH2_DIR=/opt/cray/mpt/7.0.1/gni/mpich2-gnu/48
# else:
# with working_dir('build_cbtf_cray_frontend', create=True):
# python_vers='%d.%d' % spec['python'].version[:2]
# cmake .. \
# -DCMAKE_BUILD_TYPE=Debug \
# -DCMAKE_INSTALL_PREFIX=${CBTF_KRELL_PREFIX} \
# -DCMAKE_PREFIX_PATH=${CBTF_ROOT} \
# -DCBTF_DIR=${CBTF_ROOT} \
# -DRUNTIME_TARGET_OS="cray" \
# -DCBTF_KRELL_CN_RUNTIME_DIR=${CBTF_KRELL_CN_RUNTIME_ROOT} \
# -DCBTF_CN_RUNTIME_DIR=${CBTF_CN_RUNTIME_ROOT} \
# -DLIBMONITOR_CN_RUNTIME_DIR=${LIBMONITOR_CN_ROOT} \
# -DLIBUNWIND_CN_RUNTIME_DIR=${LIBUNWIND_CN_ROOT} \
# -DPAPI_CN_RUNTIME_DIR=${PAPI_CN_ROOT} \
# -DXERCESC_CN_RUNTIME_DIR=/${XERCESC_CN_ROOT} \
# -DMRNET_CN_RUNTIME_DIR=${MRNET_CN_ROOT} \
# -DBOOST_CN_RUNTIME_DIR=${BOOST_CN_ROOT} \
# -DDYNINST_CN_RUNTIME_DIR=${DYNINST_CN_ROOT} \
# -DBOOST_ROOT=/${KRELL_ROOT} \
# -DXERCESC_DIR=/${KRELL_ROOT} \
# -DBINUTILS_DIR=/${KRELL_ROOT} \
# -DLIBMONITOR_DIR=${KRELL_ROOT} \
# -DLIBUNWIND_DIR=${KRELL_ROOT} \
# -DPAPI_DIR=${PAPI_ROOT} \
# -DDYNINST_DIR=${KRELL_ROOT} \
# -DMRNET_DIR=${KRELL_ROOT} \
# -DMPICH2_DIR=/opt/cray/mpt/7.0.1/gni/mpich2-gnu/48
# fi
#
# make("clean")
# make()
# make("install")
#
# elif '+mic' in spec:
# if '+runtime' in spec:
# with working_dir('build_cbtf_mic_runtime', create=True):
# python_vers='%d.%d' % spec['python'].version[:2]
# cmake .. \
#
# else:
# with working_dir('build_cbtf_cray_frontend', create=True):
# python_vers='%d.%d' % spec['python'].version[:2]
# cmake .. \
# fi
#
# else:
# # Build cbtf-krell with cmake
# with working_dir('build_cbtf_krell', create=True):
# cmake('..',
# '-DCMAKE_BUILD_TYPE=Debug',
# '-DCMAKE_INSTALL_PREFIX=%s' % prefix,
# '-DCBTF_DIR=%s' % spec['cbtf'].prefix,
# '-DBINUTILS_DIR=%s' % spec['binutils'].prefix,
# '-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix,
# '-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix,
# '-DPAPI_DIR=%s' % spec['papi'].prefix,
# '-DBOOST_DIR=%s' % spec['boost'].prefix,
# '-DMRNET_DIR=%s' % spec['mrnet'].prefix,
# '-DDYNINST_DIR=%s' % spec['dyninst'].prefix,
# '-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
# '-DOPENMPI_DIR=%s' % openmpi_prefix_path,
# '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
# *std_cmake_args)
#
# make("clean")
# make()
# make("install")
#
# fi
#

87
var/spack/repos/builtin/packages/cbtf-lanl/package.py
View File

@@ -1,5 +1,29 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
################################################################################
# Copyright (c) 2015 Krell Institute. All Rights Reserved.
# Copyright (c) 2015-2016 Krell Institute. All Rights Reserved.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
@@ -29,32 +53,65 @@ class CbtfLanl(Package):
version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf-lanl/cbtf-lanl')
depends_on("cmake@3.0.2")
# Dependencies for cbtf-krell
depends_on("boost@1.50")
depends_on("mrnet@4.1.0:+lwthreads")
depends_on("mrnet@5.0.1:+lwthreads+krellpatch")
depends_on("xerces-c@3.1.1:")
depends_on("cbtf")
depends_on("cbtf-krell")
parallel = False
def adjustBuildTypeParams_cmakeOptions(self, spec, cmakeOptions):
# Sets build type parameters into cmakeOptions the options that will enable the cbtf-krell built type settings
compile_flags="-O2 -g"
BuildTypeOptions = []
# Set CMAKE_BUILD_TYPE to what cbtf-krell wants it to be, not the stdcmakeargs
for word in cmakeOptions[:]:
if word.startswith('-DCMAKE_BUILD_TYPE'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_CXX_FLAGS'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_C_FLAGS'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_VERBOSE_MAKEFILE'):
cmakeOptions.remove(word)
BuildTypeOptions.extend([
'-DCMAKE_VERBOSE_MAKEFILE=ON',
'-DCMAKE_BUILD_TYPE=None',
'-DCMAKE_CXX_FLAGS=%s' % compile_flags,
'-DCMAKE_C_FLAGS=%s' % compile_flags
])
cmakeOptions.extend(BuildTypeOptions)
def install(self, spec, prefix):
# Add in paths for finding package config files that tell us where to find these packages
cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['cbtf-krell'].prefix)
with working_dir('build', create=True):
cmake('..',
'-DCBTF_DIR=%s' % spec['cbtf'].prefix,
'-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
'-DCMAKE_MODULE_PATH=%s' % join_path(prefix.share,'KrellInstitute','cmake'),
*std_cmake_args)
cmakeOptions = []
cmakeOptions.extend(['-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DCBTF_DIR=%s' % spec['cbtf'].prefix,
'-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
'-DCMAKE_MODULE_PATH=%s' % join_path(prefix.share,'KrellInstitute','cmake')
])
make("clean")
make()
make("install")
# Add in the standard cmake arguments
cmakeOptions.extend(std_cmake_args)
# Adjust the standard cmake arguments to what we want the build type, etc to be
self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions)
# Invoke cmake
cmake('..', *cmakeOptions)
make("clean")
make()
make("install")

112
var/spack/repos/builtin/packages/cbtf/package.py
View File

@@ -1,5 +1,29 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
################################################################################
# Copyright (c) 2015 Krell Institute. All Rights Reserved.
# Copyright (c) 2015-2016 Krell Institute. All Rights Reserved.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
@@ -25,21 +49,44 @@ class Cbtf(Package):
homepage = "http://sourceforge.net/p/cbtf/wiki/Home"
# Mirror access template example
#url = "file:/g/g24/jeg/cbtf-1.5.tar.gz"
#version('1.6', '1ca88a8834759c4c74452cb97fe7b70a')
#url = "file:/home/jeg/cbtf-1.6.tar.gz"
#version('1.6', 'c1ef4e5aa4e470dffb042abdba0b9987')
# Use when the git repository is available
version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf/cbtf')
version('1.6', branch='master', git='https://github.com/OpenSpeedShop/cbtf.git')
depends_on("cmake")
#depends_on("boost@1.42.0:")
depends_on("boost@1.50.0")
depends_on("mrnet@4.1.0+lwthreads")
variant('runtime', default=False, description="build only the runtime libraries and collectors.")
depends_on("cmake@3.0.2")
depends_on("boost@1.50.0:")
depends_on("mrnet@5.0.1:+lwthreads+krellpatch")
depends_on("xerces-c@3.1.1:")
depends_on("libxml2")
# Work around for spack libxml2 package bug, take off python when fixed
depends_on("libxml2+python")
parallel = False
def adjustBuildTypeParams_cmakeOptions(self, spec, cmakeOptions):
# Sets build type parameters into cmakeOptions the options that will enable the cbtf-krell built type settings
compile_flags="-O2 -g"
BuildTypeOptions = []
# Set CMAKE_BUILD_TYPE to what cbtf-krell wants it to be, not the stdcmakeargs
for word in cmakeOptions[:]:
if word.startswith('-DCMAKE_BUILD_TYPE'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_CXX_FLAGS'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_C_FLAGS'):
cmakeOptions.remove(word)
BuildTypeOptions.extend([
'-DCMAKE_BUILD_TYPE=None',
'-DCMAKE_CXX_FLAGS=%s' % compile_flags,
'-DCMAKE_C_FLAGS=%s' % compile_flags
])
cmakeOptions.extend(BuildTypeOptions)
def install(self, spec, prefix):
with working_dir('build', create=True):
@@ -48,14 +95,45 @@ def install(self, spec, prefix):
# or BOOST_INCLUDEDIR). Useful when specifying BOOST_ROOT.
# Defaults to OFF.
cmake('..',
'--debug-output',
'-DBoost_NO_SYSTEM_PATHS=TRUE',
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
'-DBOOST_ROOT=%s' % spec['boost'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DCMAKE_MODULE_PATH=%s' % join_path(prefix.share,'KrellInstitute','cmake'),
*std_cmake_args)
if '+runtime' in spec:
# Install message tag include file for use in Intel MIC cbtf-krell build
# FIXME
cmakeOptions = []
cmakeOptions.extend(['-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DBoost_NO_SYSTEM_PATHS=TRUE',
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
'-DBOOST_ROOT=%s' % spec['boost'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DCMAKE_MODULE_PATH=%s' % join_path(prefix.share,'KrellInstitute','cmake')
])
# Add in the standard cmake arguments
cmakeOptions.extend(std_cmake_args)
# Adjust the standard cmake arguments to what we want the build type, etc to be
self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions)
# Invoke cmake
cmake('..', *cmakeOptions)
else:
cmakeOptions = []
cmakeOptions.extend(['-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DBoost_NO_SYSTEM_PATHS=TRUE',
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
'-DBOOST_ROOT=%s' % spec['boost'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DCMAKE_MODULE_PATH=%s' % join_path(prefix.share,'KrellInstitute','cmake')
])
# Add in the standard cmake arguments
cmakeOptions.extend(std_cmake_args)
# Adjust the standard cmake arguments to what we want the build type, etc to be
self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions)
# Invoke cmake
cmake('..', *cmakeOptions)
make("clean")
make()

28
var/spack/repos/builtin/packages/cereal/package.py
View File

@@ -1,4 +1,29 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
import os
import shutil
class Cereal(Package):
@@ -30,5 +55,8 @@ def install(self, spec, prefix):
# Install
shutil.rmtree(join_path(prefix, 'doc'), ignore_errors=True)
shutil.rmtree(join_path(prefix, 'include'), ignore_errors=True)
shutil.rmtree(join_path(prefix, 'lib'), ignore_errors=True)
shutil.copytree('doc', join_path(prefix, 'doc'), symlinks=True)
shutil.copytree('include', join_path(prefix, 'include'), symlinks=True)
# Create empty directory to avoid linker warnings later
os.mkdir(join_path(prefix, 'lib'))

24
var/spack/repos/builtin/packages/cfitsio/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Cfitsio(Package):

16
var/spack/repos/builtin/packages/cgal/package.py
View File

@@ -1,26 +1,26 @@
##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *

24
var/spack/repos/builtin/packages/cgm/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Cgm(Package):

24
var/spack/repos/builtin/packages/cityhash/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
from spack.util.environment import *

24
var/spack/repos/builtin/packages/cleverleaf/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Cleverleaf(Package):

24
var/spack/repos/builtin/packages/cloog/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Cloog(Package):

18
var/spack/repos/builtin/packages/cmake/package.py
View File

@@ -1,26 +1,26 @@
##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
@@ -30,6 +30,8 @@ class Cmake(Package):
homepage = 'https://www.cmake.org'
url = 'https://cmake.org/files/v3.4/cmake-3.4.3.tar.gz'
version('3.5.2', '701386a1b5ec95f8d1075ecf96383e02')
version('3.5.1', 'ca051f4a66375c89d1a524e726da0296')
version('3.5.0', '33c5d09d4c33d4ffcc63578a6ba8777e')
version('3.4.3', '4cb3ff35b2472aae70f542116d616e63')
version('3.4.0', 'cd3034e0a44256a0917e254167217fc8')

24
var/spack/repos/builtin/packages/cmocka/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Cmocka(Package):

36
var/spack/repos/builtin/packages/cnmem/package.py Normal file
View File

@@ -0,0 +1,36 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Cnmem(Package):
"""CNMem mempool for CUDA devices"""
homepage = "https://github.com/NVIDIA/cnmem"
version('git', git='https://github.com/NVIDIA/cnmem.git', branch="master")
def install(self, spec, prefix):
cmake('.',*std_cmake_args)
make()
make('install')

24
var/spack/repos/builtin/packages/coreutils/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Coreutils(Package):

24
var/spack/repos/builtin/packages/cppcheck/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Cppcheck(Package):

24
var/spack/repos/builtin/packages/cram/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Cram(Package):

25
var/spack/repos/builtin/packages/cryptopp/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
import glob
from spack import *
@@ -13,6 +37,7 @@ class Cryptopp(Package):
version('5.6.3', '3c5b70e2ec98b7a24988734446242d07')
version('5.6.2', '7ed022585698df48e65ce9218f6c6a67')
version('5.6.1', '96cbeba0907562b077e26bcffb483828')
def install(self, spec, prefix):
make()

24
var/spack/repos/builtin/packages/cscope/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Cscope(Package):

16
var/spack/repos/builtin/packages/cube/package.py
View File

@@ -1,26 +1,26 @@
##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *

71
var/spack/repos/builtin/packages/cuda/package.py Normal file
View File

@@ -0,0 +1,71 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
from glob import glob
import os
class Cuda(Package):
"""CUDA is a parallel computing platform and programming model invented by
NVIDIA. It enables dramatic increases in computing performance by harnessing
the power of the graphics processing unit (GPU).
Note: NVIDIA does not provide a download URL for CUDA so you will need to
download it yourself. Go to https://developer.nvidia.com/cuda-downloads
and select your Operating System, Architecture, Distribution, and Version.
For the Installer Type, select runfile and click Download. Spack will search
your current directory for this file. Alternatively, add this file to a
mirror so that Spack can find it. For instructions on how to set up a mirror,
see http://software.llnl.gov/spack/mirrors.html
Note: This package does not currently install the drivers necessary to run
CUDA. These will need to be installed manually. See:
http://docs.nvidia.com/cuda/cuda-getting-started-guide-for-linux for details."""
homepage = "http://www.nvidia.com/object/cuda_home_new.html"
version('7.5.18', '4b3bcecf0dfc35928a0898793cf3e4c6', expand=False,
url="file://%s/cuda_7.5.18_linux.run" % os.getcwd())
version('6.5.14', '90b1b8f77313600cc294d9271741f4da', expand=False,
url="file://%s/cuda_6.5.14_linux_64.run" % os.getcwd())
def install(self, spec, prefix):
runfile = glob(os.path.join(self.stage.path, 'cuda*.run'))[0]
chmod = which('chmod')
chmod('+x', runfile)
runfile = which(runfile)
# Note: NVIDIA does not officially support many newer versions of compilers.
# For example, on CentOS 6, you must use GCC 4.4.7 or older. See:
# http://docs.nvidia.com/cuda/cuda-installation-guide-linux/#system-requirements
# for details.
runfile(
'--silent', # disable interactive prompts
'--verbose', # create verbose log file
'--toolkit', # install CUDA Toolkit
'--toolkitpath=%s' % prefix
)

26
var/spack/repos/builtin/packages/curl/package.py
View File

@@ -1,5 +1,30 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Curl(Package):
"""cURL is an open source command line tool and library for
transferring data with URL syntax"""
@@ -7,6 +32,7 @@ class Curl(Package):
homepage = "http://curl.haxx.se"
url = "http://curl.haxx.se/download/curl-7.46.0.tar.bz2"
version('7.49.1', '6bb1f7af5b58b30e4e6414b8c1abccab')
version('7.47.1', '9ea3123449439bbd960cd25cf98796fb')
version('7.46.0', '9979f989a2a9930d10f1b3deeabc2148')
version('7.45.0', '62c1a352b28558f25ba6209214beadc8')

24
var/spack/repos/builtin/packages/czmq/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
import os

28
var/spack/repos/builtin/packages/daal/package.py Normal file
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@@ -0,0 +1,28 @@
from spack import *
import os
from spack.pkg.builtin.intel import IntelInstaller
class Daal(IntelInstaller):
"""Intel Data Analytics Acceleration Library.
Note: You will have to add the download file to a
mirror so that Spack can find it. For instructions on how to set up a
mirror, see http://software.llnl.gov/spack/mirrors.html"""
homepage = "https://software.intel.com/en-us/daal"
version('2016.2.181', 'aad2aa70e5599ebfe6f85b29d8719d46',
url="file://%s/l_daal_2016.2.181.tgz" % os.getcwd())
version('2016.3.210', 'ad747c0dd97dace4cad03cf2266cad28',
url="file://%s/l_daal_2016.3.210.tgz" % os.getcwd())
def install(self, spec, prefix):
self.intel_prefix = os.path.join(prefix, "pkg")
IntelInstaller.install(self, spec, prefix)
daal_dir = os.path.join(self.intel_prefix, "daal")
for f in os.listdir(daal_dir):
os.symlink(os.path.join(daal_dir, f), os.path.join(self.prefix, f))

24
var/spack/repos/builtin/packages/dakota/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *

24
var/spack/repos/builtin/packages/damselfly/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Damselfly(Package):

27
var/spack/repos/builtin/packages/dbus/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Dbus(Package):
@@ -13,12 +37,15 @@ class Dbus(Package):
homepage = "http://dbus.freedesktop.org/"
url = "http://dbus.freedesktop.org/releases/dbus/dbus-1.8.8.tar.gz"
version('1.11.2', '957a07f066f3730d2bb3ea0932f0081b')
version('1.9.0', 'ec6895a4d5c0637b01f0d0e7689e2b36')
version('1.8.8', 'b9f4a18ee3faa1e07c04aa1d83239c43')
version('1.8.6', '6a08ba555d340e9dfe2d623b83c0eea8')
version('1.8.4', '4717cb8ab5b80978fcadf2b4f2f72e1b')
version('1.8.2', 'd6f709bbec0a022a1847c7caec9d6068')
depends_on('expat')
def install(self, spec, prefix):
configure(
"--prefix=%s" % prefix,

307
var/spack/repos/builtin/packages/dealii/package.py Normal file
View File

@@ -0,0 +1,307 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
import sys
class Dealii(Package):
"""C++ software library providing well-documented tools to build finite
element codes for a broad variety of PDEs."""
homepage = "https://www.dealii.org"
url = "https://github.com/dealii/dealii/releases/download/v8.4.1/dealii-8.4.1.tar.gz"
version('8.4.1', 'efbaf16f9ad59cfccad62302f36c3c1d')
version('8.4.0', 'ac5dbf676096ff61e092ce98c80c2b00')
version('8.3.0', 'fc6cdcb16309ef4bea338a4f014de6fa')
version('8.2.1', '71c728dbec14f371297cd405776ccf08')
version('8.1.0', 'aa8fadc2ce5eb674f44f997461bf668d')
version('dev', git='https://github.com/dealii/dealii.git')
variant('mpi', default=True, description='Compile with MPI')
variant('arpack', default=True, description='Compile with Arpack and PArpack (only with MPI)')
variant('doc', default=False, description='Compile with documentation')
variant('gsl', default=True, description='Compile with GSL')
variant('hdf5', default=True, description='Compile with HDF5 (only with MPI)')
variant('metis', default=True, description='Compile with Metis')
variant('netcdf', default=True, description='Compile with Netcdf (only with MPI)')
variant('oce', default=True, description='Compile with OCE')
variant('p4est', default=True, description='Compile with P4est (only with MPI)')
variant('petsc', default=True, description='Compile with Petsc (only with MPI)')
variant('slepc', default=True, description='Compile with Slepc (only with Petsc and MPI)')
variant('trilinos', default=True, description='Compile with Trilinos (only with MPI)')
# required dependencies, light version
depends_on("blas")
# Boost 1.58 is blacklisted, see
# https://github.com/dealii/dealii/issues/1591
# Require at least 1.59
depends_on("boost@1.59.0:+thread+system+serialization+iostreams", when='~mpi') # NOQA: ignore=E501
depends_on("boost@1.59.0:+mpi+thread+system+serialization+iostreams", when='+mpi') # NOQA: ignore=E501
depends_on("bzip2")
depends_on("cmake")
depends_on("lapack")
depends_on("muparser")
depends_on("suite-sparse")
depends_on("tbb")
depends_on("zlib")
# optional dependencies
depends_on("mpi", when="+mpi")
depends_on("arpack-ng+mpi", when='+arpack+mpi')
depends_on("doxygen+graphviz", when='+doc')
depends_on("graphviz", when='+doc')
depends_on("gsl", when='@8.5.0:+gsl')
depends_on("gsl", when='@dev+gsl')
depends_on("hdf5+mpi", when='+hdf5+mpi')
depends_on("metis@5:", when='+metis')
depends_on("netcdf+mpi", when="+netcdf+mpi")
depends_on("netcdf-cxx", when='+netcdf+mpi')
depends_on("oce", when='+oce')
depends_on("p4est", when='+p4est+mpi')
depends_on("petsc@:3.6.4+mpi", when='+petsc+mpi') # FIXME: update after 3.7 is supported upstream. # NOQA: ignore=E501
depends_on("slepc@:3.6.3", when='+slepc+petsc+mpi')
depends_on("trilinos", when='+trilinos+mpi')
# developer dependnecies
depends_on("numdiff", when='@dev')
depends_on("astyle@2.04", when='@dev')
def install(self, spec, prefix):
options = []
options.extend(std_cmake_args)
# CMAKE_BUILD_TYPE should be DebugRelease | Debug | Release
for word in options[:]:
if word.startswith('-DCMAKE_BUILD_TYPE'):
options.remove(word)
dsuf = 'dylib' if sys.platform == 'darwin' else 'so'
options.extend([
'-DCMAKE_BUILD_TYPE=DebugRelease',
'-DDEAL_II_COMPONENT_EXAMPLES=ON',
'-DDEAL_II_WITH_THREADS:BOOL=ON',
'-DBOOST_DIR=%s' % spec['boost'].prefix,
'-DBZIP2_DIR=%s' % spec['bzip2'].prefix,
# CMake's FindBlas/Lapack may pickup system's blas/lapack instead
# of Spack's. Be more specific to avoid this.
# Note that both lapack and blas are provided in -DLAPACK_XYZ.
'-DLAPACK_FOUND=true',
'-DLAPACK_INCLUDE_DIRS=%s;%s' % (
spec['lapack'].prefix.include, spec['blas'].prefix.include),
'-DLAPACK_LIBRARIES=%s;%s' % (
spec['lapack'].lapack_shared_lib,
spec['blas'].blas_shared_lib),
'-DMUPARSER_DIR=%s' % spec['muparser'].prefix,
'-DUMFPACK_DIR=%s' % spec['suite-sparse'].prefix,
'-DTBB_DIR=%s' % spec['tbb'].prefix,
'-DZLIB_DIR=%s' % spec['zlib'].prefix
])
# MPI
if '+mpi' in spec:
options.extend([
'-DDEAL_II_WITH_MPI:BOOL=ON',
'-DCMAKE_C_COMPILER=%s' % spec['mpi'].mpicc,
'-DCMAKE_CXX_COMPILER=%s' % spec['mpi'].mpicxx,
'-DCMAKE_Fortran_COMPILER=%s' % spec['mpi'].mpifc,
])
else:
options.extend([
'-DDEAL_II_WITH_MPI:BOOL=OFF',
])
# Optional dependencies for which librariy names are the same as CMake
# variables:
for library in ('gsl', 'hdf5', 'p4est', 'petsc', 'slepc', 'trilinos', 'metis'): # NOQA: ignore=E501
if library in spec:
options.extend([
'-D%s_DIR=%s' % (library.upper(), spec[library].prefix),
'-DDEAL_II_WITH_%s:BOOL=ON' % library.upper()
])
else:
options.extend([
'-DDEAL_II_WITH_%s:BOOL=OFF' % library.upper()
])
# doxygen
options.extend([
'-DDEAL_II_COMPONENT_DOCUMENTATION=%s' %
('ON' if '+doc' in spec else 'OFF'),
])
# arpack
if '+arpack' in spec:
options.extend([
'-DARPACK_DIR=%s' % spec['arpack-ng'].prefix,
'-DDEAL_II_WITH_ARPACK=ON',
'-DDEAL_II_ARPACK_WITH_PARPACK=ON'
])
else:
options.extend([
'-DDEAL_II_WITH_ARPACK=OFF'
])
# since Netcdf is spread among two, need to do it by hand:
if '+netcdf' in spec:
options.extend([
'-DNETCDF_FOUND=true',
'-DNETCDF_LIBRARIES=%s;%s' % (
join_path(spec['netcdf-cxx'].prefix.lib,
'libnetcdf_c++.%s' % dsuf),
join_path(spec['netcdf'].prefix.lib,
'libnetcdf.%s' % dsuf)),
'-DNETCDF_INCLUDE_DIRS=%s;%s' % (
spec['netcdf-cxx'].prefix.include,
spec['netcdf'].prefix.include),
])
else:
options.extend([
'-DDEAL_II_WITH_NETCDF=OFF'
])
# Open Cascade
if '+oce' in spec:
options.extend([
'-DOPENCASCADE_DIR=%s' % spec['oce'].prefix,
'-DDEAL_II_WITH_OPENCASCADE=ON'
])
else:
options.extend([
'-DDEAL_II_WITH_OPENCASCADE=OFF'
])
cmake('.', *options)
make()
make("test")
make("install")
# run some MPI examples with different solvers from PETSc and Trilinos
env['DEAL_II_DIR'] = prefix
print('=====================================')
print('============ EXAMPLES ===============')
print('=====================================')
# take bare-bones step-3
print('=====================================')
print('============ Step-3 =================')
print('=====================================')
with working_dir('examples/step-3'):
cmake('.')
make('release')
make('run', parallel=False)
# An example which uses Metis + PETSc
# FIXME: switch step-18 to MPI
with working_dir('examples/step-18'):
print('=====================================')
print('============= Step-18 ===============')
print('=====================================')
# list the number of cycles to speed up
filter_file(r'(end_time = 10;)', ('end_time = 3;'), 'step-18.cc')
if '^petsc' in spec and '^metis' in spec:
cmake('.')
make('release')
make('run', parallel=False)
# take step-40 which can use both PETSc and Trilinos
# FIXME: switch step-40 to MPI run
with working_dir('examples/step-40'):
print('=====================================')
print('========== Step-40 PETSc ============')
print('=====================================')
# list the number of cycles to speed up
filter_file(r'(const unsigned int n_cycles = 8;)',
('const unsigned int n_cycles = 2;'), 'step-40.cc')
cmake('.')
if '^petsc' in spec:
make('release')
make('run', parallel=False)
print('=====================================')
print('========= Step-40 Trilinos ==========')
print('=====================================')
# change Linear Algebra to Trilinos
# The below filter_file should be different for versions
# before and after 8.4.0
if spec.satisfies('@8.4.0:') or spec.satisfies('@dev'):
filter_file(r'(\/\/ #define FORCE_USE_OF_TRILINOS.*)',
('#define FORCE_USE_OF_TRILINOS'), 'step-40.cc')
else:
filter_file(r'(#define USE_PETSC_LA.*)',
('// #define USE_PETSC_LA'), 'step-40.cc')
if '^trilinos+hypre' in spec:
make('release')
make('run', parallel=False)
# the rest of the tests on step 40 only works for
# dealii version 8.4.0 and after
if spec.satisfies('@8.4.0:') or spec.satisfies('@dev'):
print('=====================================')
print('=== Step-40 Trilinos SuperluDist ====')
print('=====================================')
# change to direct solvers
filter_file(r'(LA::SolverCG solver\(solver_control\);)', ('TrilinosWrappers::SolverDirect::AdditionalData data(false,"Amesos_Superludist"); TrilinosWrappers::SolverDirect solver(solver_control,data);'), 'step-40.cc') # NOQA: ignore=E501
filter_file(r'(LA::MPI::PreconditionAMG preconditioner;)',
(''), 'step-40.cc')
filter_file(r'(LA::MPI::PreconditionAMG::AdditionalData data;)', # NOQA: ignore=E501
(''), 'step-40.cc')
filter_file(r'(preconditioner.initialize\(system_matrix, data\);)', # NOQA: ignore=E501
(''), 'step-40.cc')
filter_file(r'(solver\.solve \(system_matrix, completely_distributed_solution, system_rhs,)', ('solver.solve (system_matrix, completely_distributed_solution, system_rhs);'), 'step-40.cc') # NOQA: ignore=E501
filter_file(r'(preconditioner\);)', (''), 'step-40.cc')
if '^trilinos+superlu-dist' in spec:
make('release')
make('run', paralle=False)
print('=====================================')
print('====== Step-40 Trilinos MUMPS =======')
print('=====================================')
# switch to Mumps
filter_file(r'(Amesos_Superludist)',
('Amesos_Mumps'), 'step-40.cc')
if '^trilinos+mumps' in spec:
make('release')
make('run', parallel=False)
print('=====================================')
print('============ Step-36 ================')
print('=====================================')
with working_dir('examples/step-36'):
if 'slepc' in spec:
cmake('.')
make('release')
make('run', parallel=False)
print('=====================================')
print('============ Step-54 ================')
print('=====================================')
with working_dir('examples/step-54'):
if 'oce' in spec:
cmake('.')
make('release')
make('run', parallel=False)
def setup_environment(self, spack_env, env):
env.set('DEAL_II_DIR', self.prefix)

59
var/spack/repos/builtin/packages/dia/package.py Normal file
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@@ -0,0 +1,59 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Dia(Package):
"""Dia is a program for drawing structured diagrams."""
homepage = 'https://wiki.gnome.org/Apps/Dia'
url = 'https://ftp.gnome.org/pub/gnome/sources/dia/0.97/dia-0.97.3.tar.xz'
version('0.97.3', '0e744a0f6a6c4cb6a089e4d955392c3c')
depends_on('intltool')
depends_on('gtkplus@2.6.0:')
depends_on('cairo')
#depends_on('libart') # optional dependency, not yet supported by spack.
depends_on('libpng')
depends_on('libxslt')
depends_on('python')
depends_on('swig')
# depends_on('py-gtk') # optional dependency, not yet supported by spack.
def url_for_version(self, version):
"""Handle Dia's version-based custom URLs."""
return 'https://ftp.gnome.org/pub/gnome/source/dia/%s/dia-%s.tar.xz' % (version.up_to(2), version)
def install(self, spec, prefix):
# configure, build, install:
options = ['--prefix=%s' % prefix,
'--with-cairo',
'--with-xslt-prefix=%s' % spec['libxslt'].prefix,
'--with-python',
'--with-swig']
configure(*options)
make()
make('install')

24
var/spack/repos/builtin/packages/docbook-xml/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
import os
import glob
from spack import *

44
var/spack/repos/builtin/packages/doxygen/package.py
View File

@@ -1,22 +1,52 @@
#------------------------------------------------------------------------------
# Author: Justin Too <justin@doubleotoo.com>
# Date: September 11, 2015
#------------------------------------------------------------------------------
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Doxygen(Package):
"""Doxygen is the de facto standard tool for generating documentation
from annotated C++ sources, but it also supports other popular programming
languages such as C, Objective-C, C#, PHP, Java, Python, IDL (Corba,
Microsoft, and UNO/OpenOffice flavors), Fortran, VHDL, Tcl, and to some extent D..
"""
Microsoft, and UNO/OpenOffice flavors), Fortran, VHDL, Tcl, and to some
extent D.."""
homepage = "http://www.stack.nl/~dimitri/doxygen/"
url = "http://ftp.stack.nl/pub/users/dimitri/doxygen-1.8.10.src.tar.gz"
version('1.8.11', 'f4697a444feaed739cfa2f0644abc19b')
version('1.8.10', '79767ccd986f12a0f949015efb5f058f')
# graphviz appears to be a run-time optional dependency
variant('graphviz', default=True, description='Build with dot command support from Graphviz.') # NOQA: ignore=E501
depends_on("cmake@2.8.12:")
depends_on("flex")
depends_on("bison")
# optional dependencies
depends_on("graphviz", when="+graphviz")
def install(self, spec, prefix):
cmake('.', *std_cmake_args)

24
var/spack/repos/builtin/packages/dri2proto/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Dri2proto(Package):

24
var/spack/repos/builtin/packages/dtcmp/package.py
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@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
import os
from spack import *

18
var/spack/repos/builtin/packages/dyninst/package.py
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@@ -1,26 +1,26 @@
##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
@@ -31,6 +31,8 @@ class Dyninst(Package):
url = "http://www.dyninst.org/sites/default/files/downloads/dyninst/8.1.2/DyninstAPI-8.1.2.tgz"
list_url = "http://www.dyninst.org/downloads/dyninst-8.x"
version('9.1.0', '5c64b77521457199db44bec82e4988ac',
url="http://www.paradyn.org/release9.1.0/DyninstAPI-9.1.0.tgz")
version('8.2.1', 'abf60b7faabe7a2e4b54395757be39c7',
url="http://www.paradyn.org/release8.2/DyninstAPI-8.2.1.tgz")
version('8.1.2', 'bf03b33375afa66fe0efa46ce3f4b17a',

29
var/spack/repos/builtin/packages/eigen/package.py
View File

@@ -1,26 +1,26 @@
##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by David Beckingsale, david@llnl.gov, All rights reserved.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
@@ -28,7 +28,9 @@
class Eigen(Package):
"""
Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms
Eigen is a C++ template library for linear algebra
Matrices, vectors, numerical solvers, and related algorithms
"""
homepage = 'http://eigen.tuxfamily.org/'
@@ -42,15 +44,16 @@ class Eigen(Package):
variant('scotch', default=True, description='Enables scotch backend')
variant('fftw', default=True, description='Enables FFTW backend')
variant('suitesparse', default=True, description='Enables SuiteSparse support')
variant('mpfr', default=True, description='Enables support for multi-precisions floating points via mpfr')
# TODO : dependency on googlehash, superlu, adolc missing
depends_on('metis', when='+metis')
depends_on('cmake')
depends_on('metis@5:', when='+metis')
depends_on('scotch', when='+scotch')
depends_on('fftw', when='+fftw')
depends_on('suite-sparse', when='+suitesparse')
depends_on('mpfr@2.3.0:') # Eigen 3.2.7 requires at least 2.3.0
depends_on('gmp')
depends_on('mpfr@2.3.0:', when="+mpfr")
depends_on('gmp', when="+mpfr")
def install(self, spec, prefix):

24
var/spack/repos/builtin/packages/elfutils/package.py
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@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Elfutils(Package):

158
var/spack/repos/builtin/packages/elk/package.py Normal file
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@@ -0,0 +1,158 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
import spack
from spack import *
class Elk(Package):
'''An all-electron full-potential linearised augmented-plane wave
(FP-LAPW) code with many advanced features.'''
homepage = 'http://elk.sourceforge.net/'
url = 'https://sourceforge.net/projects/elk/files/elk-3.3.17.tgz'
version('3.3.17', 'f57f6230d14f3b3b558e5c71f62f0592')
# Elk provides these libraries, but allows you to specify your own
variant('blas', default=True,
description='Build with custom BLAS library')
variant('lapack', default=True,
description='Build with custom LAPACK library')
variant('fft', default=True,
description='Build with custom FFT library')
# Elk does not provide these libraries, but allows you to use them
variant('mpi', default=True,
description='Enable MPI parallelism')
variant('openmp', default=True,
description='Enable OpenMP support')
variant('libxc', default=True,
description='Link to Libxc functional library')
depends_on('blas', when='+blas')
depends_on('lapack', when='+lapack')
depends_on('fftw', when='+fft')
depends_on('mpi@2:', when='+mpi')
depends_on('libxc', when='+libxc')
# Cannot be built in parallel
parallel = False
def configure(self, spec):
# Dictionary of configuration options
config = {
'MAKE': 'make',
'AR': 'ar'
}
# Compiler-specific flags
flags = ''
if self.compiler.name == 'intel':
flags = '-O3 -ip -unroll -no-prec-div'
elif self.compiler.name == 'gcc':
flags = '-O3 -ffast-math -funroll-loops'
elif self.compiler.name == 'pgi':
flags = '-O3 -lpthread'
elif self.compiler.name == 'g95':
flags = '-O3 -fno-second-underscore'
elif self.compiler.name == 'nag':
flags = '-O4 -kind=byte -dusty -dcfuns'
elif self.compiler.name == 'xl':
flags = '-O3'
config['F90_OPTS'] = flags
config['F77_OPTS'] = flags
# BLAS/LAPACK support
# Note: BLAS/LAPACK must be compiled with OpenMP support
# if the +openmp variant is chosen
blas = 'blas.a'
lapack = 'lapack.a'
if '+blas' in spec:
blas = spec['blas'].blas_shared_lib
if '+lapack' in spec:
lapack = spec['lapack'].lapack_shared_lib
# lapack must come before blas
config['LIB_LPK'] = ' '.join([lapack, blas])
# FFT support
if '+fft' in spec:
config['LIB_FFT'] = join_path(spec['fftw'].prefix.lib,
'libfftw3.so')
config['SRC_FFT'] = 'zfftifc_fftw.f90'
else:
config['LIB_FFT'] = 'fftlib.a'
config['SRC_FFT'] = 'zfftifc.f90'
# MPI support
if '+mpi' in spec:
config['F90'] = spec['mpi'].mpifc
config['F77'] = spec['mpi'].mpif77
else:
config['F90'] = join_path(spack.build_env_path, 'f90')
config['F77'] = join_path(spack.build_env_path, 'f77')
config['SRC_MPI'] = 'mpi_stub.f90'
# OpenMP support
if '+openmp' in spec:
config['F90_OPTS'] += ' ' + self.compiler.openmp_flag
config['F77_OPTS'] += ' ' + self.compiler.openmp_flag
else:
config['SRC_OMP'] = 'omp_stub.f90'
# Libxc support
if '+libxc' in spec:
config['LIB_libxc'] = ' '.join([
join_path(spec['libxc'].prefix.lib, 'libxcf90.so'),
join_path(spec['libxc'].prefix.lib, 'libxc.so')
])
config['SRC_libxc'] = ' '.join([
'libxc_funcs.f90',
'libxc.f90',
'libxcifc.f90'
])
else:
config['SRC_libxc'] = 'libxcifc_stub.f90'
# Write configuration options to include file
with open('make.inc', 'w') as inc:
for key in config:
inc.write('{0} = {1}\n'.format(key, config[key]))
def install(self, spec, prefix):
# Elk only provides an interactive setup script
self.configure(spec)
make()
make('test')
# The Elk Makefile does not provide an install target
mkdirp(prefix.bin)
install('src/elk', prefix.bin)
install('src/eos/eos', prefix.bin)
install('src/spacegroup/spacegroup', prefix.bin)
install_tree('examples', join_path(prefix, 'examples'))
install_tree('species', join_path(prefix, 'species'))

16
var/spack/repos/builtin/packages/elpa/package.py
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@@ -1,26 +1,26 @@
##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *

59
var/spack/repos/builtin/packages/emacs/package.py
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@@ -1,21 +1,66 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
import llnl.util.tty as tty
class Emacs(Package):
"""The Emacs programmable text editor."""
homepage = "https://www.gnu.org/software/emacs"
url = "http://ftp.gnu.org/gnu/emacs/emacs-24.5.tar.gz"
version('24.5', 'd74b597503a68105e61b5b9f6d065b44')
variant('X', default=True, description="Enable a X toolkit (GTK+)")
variant('gtkplus', default=False, description="Enable a GTK+ as X toolkit (this variant is ignored if ~X)")
depends_on('ncurses')
# Emacs also depends on:
# GTK or other widget library
# libtiff, png, etc.
# For now, we assume the system provides all that stuff.
# For Ubuntu 14.04 LTS:
# sudo apt-get install libgtk-3-dev libxpm-dev libtiff5-dev libjpeg8-dev libgif-dev libpng12-dev
depends_on('libtiff', when='+X')
depends_on('libpng', when='+X')
depends_on('libxpm', when='+X')
depends_on('giflib', when='+X')
depends_on('gtkplus', when='+X+gtkplus')
def install(self, spec, prefix):
configure('--prefix=%s' % prefix)
args = []
if '+X' in spec:
if '+gtkplus' in spec:
toolkit = 'gtk{0}'.format(spec['gtkplus'].version.up_to(1))
else:
toolkit = 'no'
args = [
'--with-x',
'--with-x-toolkit={0}'.format(toolkit)
]
else:
args = ['--without-x']
if '+gtkplus' in spec:
tty.warn('The variant +gtkplus is ignored if ~X is selected.')
configure('--prefix={0}'.format(prefix), *args)
make()
make("install")

62
var/spack/repos/builtin/packages/environment-modules/package.py Normal file
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@@ -0,0 +1,62 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class EnvironmentModules(Package):
"""The Environment Modules package provides for the dynamic
modification of a user's environment via modulefiles."""
homepage = "https://sourceforge.net/p/modules/wiki/Home/"
url = "http://prdownloads.sourceforge.net/modules/modules-3.2.10.tar.gz"
version('3.2.10', '8b097fdcb90c514d7540bb55a3cb90fb')
# Dependencies:
depends_on('tcl')
def install(self, spec, prefix):
tcl_spec = spec['tcl']
# See: https://sourceforge.net/p/modules/bugs/62/
CPPFLAGS = ['-DUSE_INTERP_ERRORLINE']
config_args = [
"--without-tclx",
"--with-tclx-ver=0.0",
"--prefix=%s" % prefix,
"--with-tcl=%s" % join_path(tcl_spec.prefix, 'lib'), # It looks for tclConfig.sh
"--with-tcl-ver=%d.%d" % (tcl_spec.version.version[0], tcl_spec.version.version[1]),
'--disable-debug',
'--disable-dependency-tracking',
'--disable-silent-rules',
'--disable-versioning',
'--datarootdir=%s' % prefix.share,
'CPPFLAGS=%s' % ' '.join(CPPFLAGS)
]
configure(*config_args)
make()
make('install')

63
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View File

@@ -1,21 +1,53 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
import os
class Espresso(Package):
"""
QE is an integrated suite of Open-Source computer codes for electronic-structure calculations and materials
modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials.
QE is an integrated suite of Open-Source computer codes for
electronic-structure calculations and materials modeling at
the nanoscale. It is based on density-functional theory, plane
waves, and pseudopotentials.
"""
homepage = 'http://quantum-espresso.org'
url = 'http://www.qe-forge.org/gf/download/frsrelease/204/912/espresso-5.3.0.tar.gz'
version(
'5.4.0',
'8bb78181b39bd084ae5cb7a512c1cfe7',
url='http://www.qe-forge.org/gf/download/frsrelease/211/968/espresso-5.4.0.tar.gz'
)
version('5.3.0', '6848fcfaeb118587d6be36bd10b7f2c3')
variant('mpi', default=True, description='Build Quantum-ESPRESSO with mpi support')
variant('mpi', default=True, description='Builds with mpi support')
variant('openmp', default=False, description='Enables openMP support')
variant('scalapack', default=True, description='Enables scalapack support')
variant('elpa', default=True, description='Use elpa as an eigenvalue solver')
variant('elpa', default=True, description='Uses elpa as an eigenvalue solver')
depends_on('blas')
depends_on('lapack')
@@ -23,8 +55,13 @@ class Espresso(Package):
depends_on('mpi', when='+mpi')
depends_on('fftw~mpi', when='~mpi')
depends_on('fftw+mpi', when='+mpi')
depends_on('scalapack', when='+scalapack+mpi') # TODO : + mpi needed to avoid false dependencies installation
# TODO : + mpi needed to avoid false dependencies installation
depends_on('scalapack', when='+scalapack+mpi')
# Spurious problems running in parallel the Makefile
# generated by qe configure
parallel = False
def check_variants(self, spec):
error = 'you cannot ask for \'+{variant}\' when \'+mpi\' is not active'
if '+scalapack' in spec and '~mpi' in spec:
@@ -32,14 +69,11 @@ def check_variants(self, spec):
if '+elpa' in spec and ('~mpi' in spec or '~scalapack' in spec):
raise RuntimeError(error.format(variant='elpa'))
def setup_environment(self, spack_env, run_env):
# Espresso copies every executable in prefix without creating sub-folders
run_env.prepend_path('PATH', self.prefix)
def install(self, spec, prefix):
from glob import glob
self.check_variants(spec)
options = ['-prefix=%s' % prefix]
options = ['-prefix=%s' % prefix.bin]
if '+mpi' in spec:
options.append('--enable-parallel')
@@ -65,5 +99,10 @@ def install(self, spec, prefix):
configure(*options)
make('all')
make('install')
if spec.satisfies('platform=darwin'):
mkdirp(prefix.bin)
for filename in glob("bin/*.x"):
install(filename, prefix.bin)
else:
make('install')

24
var/spack/repos/builtin/packages/exodusii/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
# TODO: Add support for a C++11 enabled installation that filters out the

24
var/spack/repos/builtin/packages/expat/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Expat(Package):

24
var/spack/repos/builtin/packages/extrae/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
# typical working line with extrae 3.0.1

24
var/spack/repos/builtin/packages/exuberant-ctags/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class ExuberantCtags(Package):

179
var/spack/repos/builtin/packages/fenics/package.py Normal file
View File

@@ -0,0 +1,179 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Fenics(Package):
"""FEniCS is organized as a collection of interoperable components
that together form the FEniCS Project. These components include
the problem-solving environment DOLFIN, the form compiler FFC, the
finite element tabulator FIAT, the just-in-time compiler Instant,
the code generation interface UFC, the form language UFL and a
range of additional components."""
homepage = "http://fenicsproject.org/"
url = "https://bitbucket.org/fenics-project/dolfin/downloads/dolfin-1.6.0.tar.gz"
base_url = "https://bitbucket.org/fenics-project/{pkg}/downloads/{pkg}-{version}.tar.gz" # NOQA: ignore E501
variant('hdf5', default=True, description='Compile with HDF5')
variant('parmetis', default=True, description='Compile with ParMETIS')
variant('scotch', default=True, description='Compile with Scotch')
variant('petsc', default=True, description='Compile with PETSc')
variant('slepc', default=True, description='Compile with SLEPc')
variant('trilinos', default=True, description='Compile with Trilinos')
variant('suite-sparse', default=True, description='Compile with SuiteSparse solvers')
variant('vtk', default=False, description='Compile with VTK')
variant('qt', default=False, description='Compile with QT')
variant('mpi', default=True, description='Enables the distributed memory support')
variant('openmp', default=True, description='Enables the shared memory support')
variant('shared', default=True, description='Enables the build of shared libraries')
variant('debug', default=False, description='Builds a debug version of the libraries')
# not part of spack list for now
# variant('petsc4py', default=True, description='Uses PETSc4py')
# variant('slepc4py', default=True, description='Uses SLEPc4py')
# variant('pastix', default=True, description='Compile with Pastix')
patch('petsc-3.7.patch', when='^petsc@3.7:')
patch('petsc-version-detection.patch', when='@:1.6.1')
extends('python')
depends_on('py-numpy')
depends_on('py-ply')
depends_on('py-six')
depends_on('py-sphinx@1.0.1:', when='+doc')
depends_on('eigen@3.2.0:')
depends_on('boost')
depends_on('mpi', when='+mpi')
depends_on('hdf5', when='+hdf5')
depends_on('parmetis@4.0.2:^metis+real64', when='+parmetis')
depends_on('scotch~metis', when='+scotch~mpi')
depends_on('scotch+mpi~metis', when='+scotch+mpi')
depends_on('petsc@3.4:', when='+petsc')
depends_on('slepc@3.4:', when='+slepc')
depends_on('trilinos', when='+trilinos')
depends_on('vtk', when='+vtk')
depends_on('suite-sparse', when='+suite-sparse')
depends_on('qt', when='+qt')
# This are the build dependencies
depends_on('py-setuptools')
depends_on('cmake@2.8.12:')
depends_on('swig@3.0.3:')
releases = [
{
'version': '1.6.0',
'md5': '35cb4baf7ab4152a40fb7310b34d5800',
'resources': {
'ffc': '358faa3e9da62a1b1a717070217b793e',
'fiat': 'f4509d05c911fd93cea8d288a78a6c6f',
'instant': '5f2522eb032a5bebbad6597b6fe0732a',
'ufl': 'c40c5f04eaa847377ab2323122284016',
}
},
{
'version': '1.5.0',
'md5': '9b589a3534299a5e6d22c13c5eb30bb8',
'resources': {
'ffc': '343f6d30e7e77d329a400fd8e73e0b63',
'fiat': 'da3fa4dd8177bb251e7f68ec9c7cf6c5',
'instant': 'b744023ded27ee9df4a8d8c6698c0d58',
'ufl': '130d7829cf5a4bd5b52bf6d0955116fd',
}
},
]
for release in releases:
version(release['version'], release['md5'], url=base_url.format(pkg='dolfin', version=release['version']))
for name, md5 in release['resources'].items():
resource(name=name,
url=base_url.format(pkg=name, **release),
md5=md5,
destination='depends',
when='@{version}'.format(**release),
placement=name)
def cmake_is_on(self, option):
return 'ON' if option in self.spec else 'OFF'
def install(self, spec, prefix):
for package in ['ufl', 'ffc', 'fiat', 'instant']:
with working_dir(join_path('depends', package)):
python('setup.py', 'install', '--prefix=%s' % prefix)
cmake_args = [
'-DCMAKE_BUILD_TYPE:STRING={0}'.format(
'Debug' if '+debug' in spec else 'RelWithDebInfo'),
'-DBUILD_SHARED_LIBS:BOOL={0}'.format(
self.cmake_is_on('+shared')),
'-DDOLFIN_SKIP_BUILD_TESTS:BOOL=ON',
'-DDOLFIN_ENABLE_OPENMP:BOOL={0}'.format(
self.cmake_is_on('+openmp')),
'-DDOLFIN_ENABLE_CHOLMOD:BOOL={0}'.format(
self.cmake_is_on('suite-sparse')),
'-DDOLFIN_ENABLE_HDF5:BOOL={0}'.format(
self.cmake_is_on('hdf5')),
'-DDOLFIN_ENABLE_MPI:BOOL={0}'.format(
self.cmake_is_on('mpi')),
'-DDOLFIN_ENABLE_PARMETIS:BOOL={0}'.format(
self.cmake_is_on('parmetis')),
'-DDOLFIN_ENABLE_PASTIX:BOOL={0}'.format(
self.cmake_is_on('pastix')),
'-DDOLFIN_ENABLE_PETSC:BOOL={0}'.format(
self.cmake_is_on('petsc')),
'-DDOLFIN_ENABLE_PETSC4PY:BOOL={0}'.format(
self.cmake_is_on('py-petsc4py')),
'-DDOLFIN_ENABLE_PYTHON:BOOL={0}'.format(
self.cmake_is_on('python')),
'-DDOLFIN_ENABLE_QT:BOOL={0}'.format(
self.cmake_is_on('qt')),
'-DDOLFIN_ENABLE_SCOTCH:BOOL={0}'.format(
self.cmake_is_on('scotch')),
'-DDOLFIN_ENABLE_SLEPC:BOOL={0}'.format(
self.cmake_is_on('slepc')),
'-DDOLFIN_ENABLE_SLEPC4PY:BOOL={0}'.format(
self.cmake_is_on('py-slepc4py')),
'-DDOLFIN_ENABLE_SPHINX:BOOL={0}'.format(
self.cmake_is_on('py-sphinx')),
'-DDOLFIN_ENABLE_TRILINOS:BOOL={0}'.format(
self.cmake_is_on('trilinos')),
'-DDOLFIN_ENABLE_UMFPACK:BOOL={0}'.format(
self.cmake_is_on('suite-sparse')),
'-DDOLFIN_ENABLE_VTK:BOOL={0}'.format(
self.cmake_is_on('vtk')),
'-DDOLFIN_ENABLE_ZLIB:BOOL={0}'.format(
self.cmake_is_on('zlib')),
]
cmake_args.extend(std_cmake_args)
with working_dir('build', create=True):
cmake('..', *cmake_args)
make()
make('install')

394
var/spack/repos/builtin/packages/fenics/petsc-3.7.patch Normal file
View File

@@ -0,0 +1,394 @@
diff -Naur dolfin-1.6.0/dolfin/common/SubSystemsManager.cpp dolfin-1.6.0.new/dolfin/common/SubSystemsManager.cpp
--- dolfin-1.6.0/dolfin/common/SubSystemsManager.cpp 2015-07-28 17:05:55.000000000 +0200
+++ dolfin-1.6.0.new/dolfin/common/SubSystemsManager.cpp 2016-06-26 23:42:56.391929550 +0200
@@ -179,7 +179,7 @@
PetscInitialized(&is_initialized);
if (is_initialized)
{
- PetscOptionsInsert(&argc, &argv, PETSC_NULL);
+ PetscOptionsInsert(NULL, &argc, &argv, PETSC_NULL);
}
else
{
@@ -187,12 +187,12 @@
PetscInitializeNoArguments();
// Set options to avoid common failures with some 3rd party solvers
- PetscOptionsSetValue("-mat_mumps_icntl_7", "0");
- PetscOptionsSetValue("-mat_superlu_dist_colperm", "MMD_AT_PLUS_A");
+ PetscOptionsSetValue(NULL, "-mat_mumps_icntl_7", "0");
+ PetscOptionsSetValue(NULL, "-mat_superlu_dist_colperm", "MMD_AT_PLUS_A");
// Pass command line arguments to PETSc (will overwrite any
// default above)
- PetscOptionsInsert(&argc, &argv, PETSC_NULL);
+ PetscOptionsInsert(NULL, &argc, &argv, PETSC_NULL);
}
// Set PETSc
diff -Naur dolfin-1.6.0/dolfin/la/PETScKrylovSolver.cpp dolfin-1.6.0.new/dolfin/la/PETScKrylovSolver.cpp
--- dolfin-1.6.0/dolfin/la/PETScKrylovSolver.cpp 2015-07-28 17:05:55.000000000 +0200
+++ dolfin-1.6.0.new/dolfin/la/PETScKrylovSolver.cpp 2016-06-26 23:33:02.418351380 +0200
@@ -564,6 +564,11 @@
return solve(x, b);
}
//-----------------------------------------------------------------------------
+PetscErrorCode PETScKrylovSolver::ksp_monitor_norm(KSP ksp, PetscInt n, PetscReal rnorm, void *vf)
+{
+ KSPMonitorTrueResidualNorm(ksp, n, rnorm, static_cast<PetscViewerAndFormat *>(vf));
+}
+//-----------------------------------------------------------------------------
void PETScKrylovSolver::set_petsc_ksp_options()
{
PetscErrorCode ierr;
@@ -585,7 +590,8 @@
const bool monitor_convergence = parameters["monitor_convergence"];
if (monitor_convergence)
{
- ierr = KSPMonitorSet(_ksp, KSPMonitorTrueResidualNorm, 0, 0);
+ PetscViewerAndFormatCreate(PETSC_VIEWER_STDOUT_WORLD, PETSC_VIEWER_DEFAULT, &_vf);
+ ierr = KSPMonitorSet(_ksp, ksp_monitor_norm, _vf, 0);
if (ierr != 0) petsc_error(ierr, __FILE__, "KSPMonitorSet");
}
diff -Naur dolfin-1.6.0/dolfin/la/PETScKrylovSolver.h dolfin-1.6.0.new/dolfin/la/PETScKrylovSolver.h
--- dolfin-1.6.0/dolfin/la/PETScKrylovSolver.h 2015-07-28 17:05:55.000000000 +0200
+++ dolfin-1.6.0.new/dolfin/la/PETScKrylovSolver.h 2016-06-26 23:19:40.767042975 +0200
@@ -179,6 +179,12 @@
// PETSc solver pointer
KSP _ksp;
+ // viewer for monitoring
+ PetscViewerAndFormat* _vf;
+
+ // monitoring function
+ static PetscErrorCode ksp_monitor_norm(KSP ksp, PetscInt n, PetscReal rnorm, void *ctx);
+
// DOLFIN-defined PETScUserPreconditioner
PETScUserPreconditioner* pc_dolfin;
diff -Naur dolfin-1.6.0/dolfin/la/PETScLUSolver.cpp dolfin-1.6.0.new/dolfin/la/PETScLUSolver.cpp
--- dolfin-1.6.0/dolfin/la/PETScLUSolver.cpp 2015-07-28 17:05:55.000000000 +0200
+++ dolfin-1.6.0.new/dolfin/la/PETScLUSolver.cpp 2016-06-26 23:13:36.903732301 +0200
@@ -246,14 +246,14 @@
if (parameters["num_threads"].is_set())
{
// Use number of threads specified for LU solver
- ierr = PetscOptionsSetValue("-mat_pastix_threadnbr",
+ ierr = PetscOptionsSetValue(NULL, "-mat_pastix_threadnbr",
parameters["num_threads"].value_str().c_str());
if (ierr != 0) petsc_error(ierr, __FILE__, "PetscOptionsSetValue");
}
else
{
// Use global number of threads
- ierr = PetscOptionsSetValue("-mat_pastix_threadnbr",
+ ierr = PetscOptionsSetValue(NULL, "-mat_pastix_threadnbr",
dolfin::parameters["num_threads"].value_str().c_str());
if (ierr != 0) petsc_error(ierr, __FILE__, "PetscOptionsSetValue");
}
diff -Naur dolfin-1.6.0/dolfin/la/PETScOptions.cpp dolfin-1.6.0.new/dolfin/la/PETScOptions.cpp
--- dolfin-1.6.0/dolfin/la/PETScOptions.cpp 2015-07-28 17:05:55.000000000 +0200
+++ dolfin-1.6.0.new/dolfin/la/PETScOptions.cpp 2016-06-26 23:37:58.613121118 +0200
@@ -54,7 +54,7 @@
{
SubSystemsManager::init_petsc();
PetscErrorCode ierr;
- ierr = PetscOptionsClearValue(option.c_str());
+ ierr = PetscOptionsClearValue(NULL, option.c_str());
if (ierr != 0)
{
dolfin_error("PETScOptions.cpp",
diff -Naur dolfin-1.6.0/dolfin/la/PETScOptions.h dolfin-1.6.0.new/dolfin/la/PETScOptions.h
--- dolfin-1.6.0/dolfin/la/PETScOptions.h 2015-07-28 17:05:55.000000000 +0200
+++ dolfin-1.6.0.new/dolfin/la/PETScOptions.h 2016-06-26 23:37:54.352023709 +0200
@@ -65,7 +65,7 @@
PetscErrorCode ierr;
std::string _option = "-" + option;
- ierr = PetscOptionsSetValue(_option.c_str(),
+ ierr = PetscOptionsSetValue(NULL, _option.c_str(),
boost::lexical_cast<std::string>(value).c_str());
if (ierr != 0)
{
diff -Naur dolfin-1.6.0/dolfin/la/SLEPcEigenSolver.cpp dolfin-1.6.0.new/dolfin/la/SLEPcEigenSolver.cpp
--- dolfin-1.6.0/dolfin/la/SLEPcEigenSolver.cpp 2015-07-28 17:05:55.000000000 +0200
+++ dolfin-1.6.0.new/dolfin/la/SLEPcEigenSolver.cpp 2016-06-26 23:35:25.930631132 +0200
@@ -99,6 +99,19 @@
solve(_matA->size(0));
}
//-----------------------------------------------------------------------------
+PetscErrorCode SLEPcEigenSolver::eps_monitor(EPS eps, PetscInt its, PetscInt nconv, PetscScalar* eigr,
+ PetscScalar* eigi, PetscReal* errest,
+ PetscInt nest, void *vf)
+{
+ EPSMonitorAll(eps, its, nconv, eigr, eigi, errest, nest,
+ static_cast<PetscViewerAndFormat *>(vf));
+}
+//-----------------------------------------------------------------------------
+PetscErrorCode SLEPcEigenSolver::ksp_monitor(KSP ksp, PetscInt n, PetscReal rnorm, void *vf)
+{
+ KSPMonitorDefault(ksp, n, rnorm, static_cast<PetscViewerAndFormat *>(vf));
+}
+//-----------------------------------------------------------------------------
void SLEPcEigenSolver::solve(std::size_t n)
{
dolfin_assert(_matA);
@@ -139,10 +152,11 @@
{
KSP ksp;
ST st;
- EPSMonitorSet(_eps, EPSMonitorAll, NULL, NULL);
+ PetscViewerAndFormatCreate(PETSC_VIEWER_STDOUT_WORLD, PETSC_VIEWER_DEFAULT, &_vf);
+ EPSMonitorSet(_eps, eps_monitor, _vf, NULL);
EPSGetST(_eps, &st);
STGetKSP(st, &ksp);
- KSPMonitorSet(ksp, KSPMonitorDefault, NULL, NULL);
+ KSPMonitorSet(ksp, ksp_monitor, _vf, NULL);
EPSView(_eps, PETSC_VIEWER_STDOUT_SELF);
}
diff -Naur dolfin-1.6.0/dolfin/la/SLEPcEigenSolver.h dolfin-1.6.0.new/dolfin/la/SLEPcEigenSolver.h
--- dolfin-1.6.0/dolfin/la/SLEPcEigenSolver.h 2015-07-28 17:05:55.000000000 +0200
+++ dolfin-1.6.0.new/dolfin/la/SLEPcEigenSolver.h 2016-06-26 23:36:08.784610612 +0200
@@ -231,6 +231,11 @@
// SLEPc solver pointer
EPS _eps;
+ PetscViewerAndFormat* _vf;
+ static PetscErrorCode eps_monitor(EPS eps, int its, int nconv, PetscScalar *eigr,
+ PetscScalar *eigi, PetscReal* errest,
+ int nest, void *mctx);
+ static PetscErrorCode ksp_monitor(KSP ksp, PetscInt n, PetscReal rnorm, void *vf);
};
}
diff -Naur dolfin-1.6.0/dolfin/nls/PETScSNESSolver.cpp dolfin-1.6.0.new/dolfin/nls/PETScSNESSolver.cpp
--- dolfin-1.6.0/dolfin/nls/PETScSNESSolver.cpp 2015-07-28 17:05:55.000000000 +0200
+++ dolfin-1.6.0.new/dolfin/nls/PETScSNESSolver.cpp 2016-06-26 23:19:40.166029256 +0200
@@ -195,6 +195,15 @@
return this->solve(nonlinear_problem, x);
}
//-----------------------------------------------------------------------------
+PetscErrorCode
+PETScSNESSolver::snes_monitor(SNES snes, PetscInt its,
+ PetscReal fgnorm, void *vf)
+{
+ PetscViewerAndFormat * _vf = static_cast<PetscViewerAndFormat *>(vf);
+ SNESMonitorDefault(snes, its, fgnorm, _vf);
+ return(0);
+}
+//-----------------------------------------------------------------------------
void
PETScSNESSolver::init(NonlinearProblem& nonlinear_problem,
GenericVector& x)
@@ -237,9 +246,11 @@
}
// Set some options from the parameters
- if (report)
- SNESMonitorSet(_snes, SNESMonitorDefault, PETSC_NULL, PETSC_NULL);
-
+ if (report) {
+ PetscViewerAndFormatCreate(PETSC_VIEWER_STDOUT_WORLD, PETSC_VIEWER_DEFAULT, &_snes_ctx.vf);
+ SNESMonitorSet(_snes, PETScSNESSolver::snes_monitor, _snes_ctx.vf, PETSC_NULL);
+ }
+
// Set the bounds, if any
set_bounds(x);
@@ -293,8 +304,8 @@
SNESGetLineSearch(_snes, &linesearch);
#endif
- if (report)
- SNESLineSearchSetMonitor(linesearch, PETSC_TRUE);
+ // if (report)
+ // SNESLineSearchSetMonitor(linesearch, PETSC_TRUE);
const std::string line_search_type = std::string(parameters["line_search"]);
SNESLineSearchSetType(linesearch, line_search_type.c_str());
@@ -466,6 +477,24 @@
}
#endif
//-----------------------------------------------------------------------------
+PetscErrorCode
+PETScSNESSolver::ksp_monitor(KSP ksp, PetscInt n,
+ PetscReal rnorm, void *vf)
+{
+ PetscViewerAndFormat * _vf = static_cast<PetscViewerAndFormat *>(vf);
+ KSPMonitorDefault(ksp, n, rnorm, _vf);
+ return(0);
+}
+//-----------------------------------------------------------------------------
+PetscErrorCode
+PETScSNESSolver::ksp_monitor_norm(KSP ksp, PetscInt n,
+ PetscReal rnorm, void *vf)
+{
+ PetscViewerAndFormat * _vf = static_cast<PetscViewerAndFormat *>(vf);
+ KSPMonitorTrueResidualNorm(ksp, n, rnorm, _vf);
+ return(0);
+}
+//-----------------------------------------------------------------------------
void PETScSNESSolver::set_linear_solver_parameters()
{
KSP ksp;
@@ -482,7 +511,7 @@
PetscObjectGetComm((PetscObject)_snes, &comm);
if (parameters["report"])
- KSPMonitorSet(ksp, KSPMonitorDefault, PETSC_NULL, PETSC_NULL);
+ KSPMonitorSet(ksp, PETScSNESSolver::ksp_monitor, _snes_ctx.vf, PETSC_NULL);
const std::string linear_solver = parameters["linear_solver"];
const std::string preconditioner = parameters["preconditioner"];
@@ -518,7 +547,7 @@
KSPSetInitialGuessNonzero(ksp, PETSC_FALSE);
if (krylov_parameters["monitor_convergence"])
- KSPMonitorSet(ksp, KSPMonitorTrueResidualNorm, 0, 0);
+ KSPMonitorSet(ksp, PETScSNESSolver::ksp_monitor_norm, _snes_ctx.vf, 0);
// Set tolerances
const int max_iters = krylov_parameters["maximum_iterations"];
diff -Naur dolfin-1.6.0/dolfin/nls/PETScSNESSolver.h dolfin-1.6.0.new/dolfin/nls/PETScSNESSolver.h
--- dolfin-1.6.0/dolfin/nls/PETScSNESSolver.h 2015-07-28 17:05:55.000000000 +0200
+++ dolfin-1.6.0.new/dolfin/nls/PETScSNESSolver.h 2016-06-26 22:31:21.554129282 +0200
@@ -24,6 +24,7 @@
#include <map>
#include <petscsnes.h>
+#include <petscviewer.h>
#include <memory>
#include <dolfin/nls/NewtonSolver.h>
#include <dolfin/parameter/Parameters.h>
@@ -124,8 +125,15 @@
Vec f_tmp;
const PETScVector* xl;
const PETScVector* xu;
+ PetscViewerAndFormat* vf;
};
+
+ // monitoring functions
+ static PetscErrorCode snes_monitor(SNES snes, PetscInt its, PetscReal fgnorm, void* ctx);
+ static PetscErrorCode ksp_monitor(KSP ksp, PetscInt n, PetscReal rnorm, void *ctx);
+ static PetscErrorCode ksp_monitor_norm(KSP ksp, PetscInt n, PetscReal rnorm, void *ctx);
+
// PETSc solver pointer
SNES _snes;
diff -Naur dolfin-1.6.0/dolfin/nls/PETScTAOSolver.cpp dolfin-1.6.0.new/dolfin/nls/PETScTAOSolver.cpp
--- dolfin-1.6.0/dolfin/nls/PETScTAOSolver.cpp 2015-07-28 17:05:55.000000000 +0200
+++ dolfin-1.6.0.new/dolfin/nls/PETScTAOSolver.cpp 2016-06-27 19:14:47.367885081 +0200
@@ -186,6 +186,15 @@
init(optimisation_problem, x.down_cast<PETScVector>(), lb, ub);
}
//-----------------------------------------------------------------------------
+PetscErrorCode
+PETScTAOSolver::ksp_monitor_norm(KSP ksp, PetscInt n,
+ PetscReal rnorm, void * vf)
+{
+ PetscViewerAndFormat * _vf = static_cast<PetscViewerAndFormat *>(vf);
+ KSPMonitorTrueResidualNorm(ksp, n, rnorm, _vf);
+ return(0);
+}
+//-----------------------------------------------------------------------------
void PETScTAOSolver::init(OptimisationProblem& optimisation_problem,
PETScVector& x,
const PETScVector& lb,
@@ -365,9 +374,7 @@
set_tao(parameters["method"]);
// Set tolerances
- TaoSetTolerances(_tao, parameters["function_absolute_tol"],
- parameters["function_relative_tol"],
- parameters["gradient_absolute_tol"],
+ TaoSetTolerances(_tao, parameters["gradient_absolute_tol"],
parameters["gradient_relative_tol"],
parameters["gradient_t_tol"]);
@@ -490,8 +497,10 @@
KSPSetInitialGuessNonzero(ksp, PETSC_FALSE);
// KSP monitor
- if (krylov_parameters["monitor_convergence"])
- KSPMonitorSet(ksp, KSPMonitorTrueResidualNorm, 0, 0);
+ if (krylov_parameters["monitor_convergence"]) {
+ PetscViewerAndFormatCreate(PETSC_VIEWER_STDOUT_WORLD, PETSC_VIEWER_DEFAULT, &vf);
+ KSPMonitorSet(ksp, ksp_monitor_norm, vf, 0);
+ }
// Get integer tolerances (to take care of casting to PetscInt)
const int max_iter = krylov_parameters["maximum_iterations"];
diff -Naur dolfin-1.6.0/dolfin/nls/PETScTAOSolver.h dolfin-1.6.0.new/dolfin/nls/PETScTAOSolver.h
--- dolfin-1.6.0/dolfin/nls/PETScTAOSolver.h 2015-07-28 17:05:55.000000000 +0200
+++ dolfin-1.6.0.new/dolfin/nls/PETScTAOSolver.h 2016-06-27 19:08:00.634361160 +0200
@@ -146,6 +146,10 @@
// TAO pointer
Tao _tao;
+ // monitoring functions
+ PetscViewerAndFormat* vf;
+ static PetscErrorCode ksp_monitor_norm(KSP ksp, PetscInt n, PetscReal rnorm, void *ctx);
+
// Update parameters when tao/ksp/pc_types are explictly given
void update_parameters(const std::string tao_type,
const std::string ksp_type,
diff -Naur dolfin-1.6.0/dolfin/nls/TAOLinearBoundSolver.cpp dolfin-1.6.0.new/dolfin/nls/TAOLinearBoundSolver.cpp
--- dolfin-1.6.0/dolfin/nls/TAOLinearBoundSolver.cpp 2015-07-28 17:05:55.000000000 +0200
+++ dolfin-1.6.0.new/dolfin/nls/TAOLinearBoundSolver.cpp 2016-06-27 19:17:10.390216576 +0200
@@ -313,9 +313,7 @@
dolfin_assert(_tao);
// Set tolerances
- TaoSetTolerances(_tao, parameters["function_absolute_tol"],
- parameters["function_relative_tol"],
- parameters["gradient_absolute_tol"],
+ TaoSetTolerances(_tao, parameters["gradient_absolute_tol"],
parameters["gradient_relative_tol"],
parameters["gradient_t_tol"]);
@@ -340,6 +338,15 @@
set_solver(method);
}
//-----------------------------------------------------------------------------
+PetscErrorCode
+TAOLinearBoundSolver::ksp_monitor_norm(KSP ksp, PetscInt n,
+ PetscReal rnorm, void * vf)
+{
+ PetscViewerAndFormat * _vf = static_cast<PetscViewerAndFormat *>(vf);
+ KSPMonitorTrueResidualNorm(ksp, n, rnorm, _vf);
+ return(0);
+}
+//-----------------------------------------------------------------------------
void TAOLinearBoundSolver::set_ksp_options()
{
dolfin_assert(_tao);
@@ -360,8 +367,10 @@
else
KSPSetInitialGuessNonzero(ksp, PETSC_FALSE);
- if (krylov_parameters["monitor_convergence"])
- KSPMonitorSet(ksp, KSPMonitorTrueResidualNorm, 0, 0);
+ if (krylov_parameters["monitor_convergence"]) {
+ PetscViewerAndFormatCreate(PETSC_VIEWER_STDOUT_WORLD, PETSC_VIEWER_DEFAULT, &vf);
+ KSPMonitorSet(ksp, ksp_monitor_norm, vf, 0);
+ }
// Set tolerances
const int max_ksp_it = krylov_parameters["maximum_iterations"];
diff -Naur dolfin-1.6.0/dolfin/nls/TAOLinearBoundSolver.h dolfin-1.6.0.new/dolfin/nls/TAOLinearBoundSolver.h
--- dolfin-1.6.0/dolfin/nls/TAOLinearBoundSolver.h 2015-07-28 17:05:55.000000000 +0200
+++ dolfin-1.6.0.new/dolfin/nls/TAOLinearBoundSolver.h 2016-06-27 19:08:09.157561005 +0200
@@ -174,6 +174,10 @@
// Tao solver pointer
Tao _tao;
+ // monitoring functions
+ PetscViewerAndFormat* vf;
+ static PetscErrorCode ksp_monitor_norm(KSP ksp, PetscInt n, PetscReal rnorm, void *ctx);
+
// Petsc preconditioner
std::shared_ptr<PETScPreconditioner> preconditioner;

39
var/spack/repos/builtin/packages/fenics/petsc-version-detection.patch Normal file
View File

@@ -0,0 +1,39 @@
--- dolfin-1.6.0.orig/cmake/modules/FindPETSc.cmake 2015-07-28 17:05:55.000000000 +0200
+++ dolfin-1.6.0/cmake/modules/FindPETSc.cmake 2016-06-27 17:16:02.484402705 +0200
@@ -207,13 +207,7 @@
endif()
-# Build PETSc test program
-if (DOLFIN_SKIP_BUILD_TESTS)
- set(PETSC_TEST_RUNS TRUE)
- set(PETSC_VERSION "UNKNOWN")
- set(PETSC_VERSION_OK TRUE)
-elseif (FOUND_PETSC_CONF)
-
+if (FOUND_PETSC_CONF)
# Set flags for building test program
set(CMAKE_REQUIRED_INCLUDES ${PETSC_INCLUDE_DIRS})
set(CMAKE_REQUIRED_LIBRARIES ${PETSC_LIBRARIES})
@@ -271,7 +265,10 @@
set(PETSC_VERSION_OK TRUE)
endif()
mark_as_advanced(PETSC_VERSION_OK)
+endif()
+ # Build PETSc test program
+if (NOT DOLFIN_SKIP_BUILD_TESTS AND FOUND_PETSC_CONF)
# Run PETSc test program
set(PETSC_TEST_LIB_CPP
"${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/petsc_test_lib.cpp")
@@ -359,7 +356,9 @@
else()
message(STATUS "PETSc configured without Cusp support")
endif()
-
+else()
+ set(PETSC_TEST_RUNS TRUE)
+
endif()
# Check sizeof(PetscInt)

103
var/spack/repos/builtin/packages/ferret/package.py Normal file
View File

@@ -0,0 +1,103 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
import os
class Ferret(Package):
"""Ferret is an interactive computer visualization and analysis environment
designed to meet the needs of oceanographers and meteorologists
analyzing large and complex gridded data sets."""
homepage = "http://ferret.noaa.gov/Ferret/"
url = "ftp://ftp.pmel.noaa.gov/ferret/pub/source/fer_source.tar.gz"
version('6.96', '51722027c864369f41bab5751dfff8cc',
url="ftp://ftp.pmel.noaa.gov/ferret/pub/source/fer_source.tar.gz")
depends_on("hdf5~mpi~fortran")
depends_on("netcdf~mpi")
depends_on("netcdf-fortran")
depends_on("readline")
depends_on("zlib")
def patch(self):
hdf5_prefix = self.spec['hdf5'].prefix
netcdff_prefix = self.spec['netcdf-fortran'].prefix
readline_prefix = self.spec['readline'].prefix
libz_prefix = self.spec['zlib'].prefix
filter_file(r'^BUILDTYPE.+',
'BUILDTYPE = x86_64-linux',
'FERRET/site_specific.mk')
filter_file(r'^INSTALL_FER_DIR.+',
'INSTALL_FER_DIR = %s' % self.spec.prefix,
'FERRET/site_specific.mk')
filter_file(r'^HDF5_DIR.+',
'HDF5_DIR = %s' % hdf5_prefix,
'FERRET/site_specific.mk')
filter_file(r'^NETCDF4_DIR.+',
'NETCDF4_DIR = %s' % netcdff_prefix,
'FERRET/site_specific.mk')
filter_file(r'^READLINE_DIR.+',
'READLINE_DIR = %s' % readline_prefix,
'FERRET/site_specific.mk')
filter_file(r'^LIBZ_DIR.+',
'LIBZ_DIR = %s' % libz_prefix,
'FERRET/site_specific.mk')
filter_file(r'^JAVA_HOME.+',
' ',
'FERRET/site_specific.mk')
filter_file(r'-lm',
'-lgfortran -lm',
'FERRET/platform_specific.mk.x86_64-linux')
def install(self, spec, prefix):
hdf5_prefix = spec['hdf5'].prefix
netcdff_prefix = spec['netcdf-fortran'].prefix
netcdf_prefix = spec['netcdf'].prefix
libz_prefix = spec['zlib'].prefix
ln = which('ln')
ln('-sf',
hdf5_prefix + '/lib',
hdf5_prefix + '/lib64')
ln('-sf',
netcdff_prefix + '/lib',
netcdff_prefix + '/lib64')
ln('-sf',
netcdf_prefix + '/lib/libnetcdf.a',
netcdff_prefix + '/lib/libnetcdf.a')
ln('-sf',
netcdf_prefix + '/lib/libnetcdf.la',
netcdff_prefix + '/lib/libnetcdf.la')
ln('-sf',
libz_prefix + '/lib',
libz_prefix + '/lib64')
os.environ['LDFLAGS'] = '-lquadmath'
with working_dir('FERRET', create=False):
os.environ['LD_X11'] = '-L/usr/lib/X11 -lX11'
os.environ['HOSTTYPE'] = 'x86_64-linux'
make(parallel=False)
make("install")

29
var/spack/repos/builtin/packages/fftw/package.py
View File

@@ -1,26 +1,26 @@
##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
@@ -42,7 +42,7 @@ class Fftw(Package):
variant('float', default=True, description='Produces a single precision version of the library')
variant('long_double', default=True, description='Produces a long double precision version of the library')
variant('quad', default=False, description='Produces a quad precision version of the library (works only with GCC and libquadmath)')
variant('openmp', default=False, description="Enable OpenMP support.")
variant('mpi', default=False, description='Activate MPI support')
depends_on('mpi', when='+mpi')
@@ -52,8 +52,15 @@ class Fftw(Package):
def install(self, spec, prefix):
options = ['--prefix=%s' % prefix,
'--enable-shared',
'--enable-threads',
'--enable-openmp']
'--enable-threads']
# Add support for OpenMP
if '+openmp' in spec:
# Note: Apple's Clang does not support OpenMP.
if spec.satisfies('%clang'):
ver = str(self.compiler.version)
if ver.endswith('-apple'):
raise InstallError("Apple's clang does not support OpenMP")
options.append('--enable-openmp')
if not self.compiler.f77 or not self.compiler.fc:
options.append("--disable-fortran")
if '+mpi' in spec:

24
var/spack/repos/builtin/packages/fish/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Fish(Package):

30
var/spack/repos/builtin/packages/flex/package.py
View File

@@ -1,13 +1,41 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Flex(Package):
"""Flex is a tool for generating scanners."""
homepage = "http://flex.sourceforge.net/"
url = "http://download.sourceforge.net/flex/flex-2.5.39.tar.gz"
url = "http://download.sourceforge.net/flex/flex-2.5.39.tar.gz"
version('2.6.0', '5724bcffed4ebe39e9b55a9be80859ec')
version('2.5.39', 'e133e9ead8ec0a58d81166b461244fde')
depends_on("bison")
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)

16
var/spack/repos/builtin/packages/fltk/package.py
View File

@@ -1,26 +1,26 @@
##############################################################################
# Copyright (c) 2013-2015, Lawrence Livermore National Security, LLC.
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *

24
var/spack/repos/builtin/packages/flux/package.py
View File

@@ -1,3 +1,27 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
import os

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