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Add package for bedtools2 (#1572)

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Add package for bedtools2, with support for v2.25.0 and v2.26.0.
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George Hartzell 2016-09-21 04:23:03 -07:00 committed by Todd Gamblin
parent db0baaafe3
commit 51d869493a
1 changed files with 43 additions and 0 deletions
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var/spack/repos/builtin/packages/bedtools2/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Bedtools2(Package):
"""Collectively, the bedtools utilities are a swiss-army knife of
tools for a wide-range of genomics analysis tasks. The most
widely-used tools enable genome arithmetic: that is, set theory
on the genome."""
homepage = "https://github.com/arq5x/bedtools2"
url = "https://github.com/arq5x/bedtools2/archive/v2.26.0.tar.gz"
version('2.26.0', '52227e7efa6627f0f95d7d734973233d')
version('2.25.0', '534fb4a7bf0d0c3f05be52a0160d8e3d')
depends_on('zlib')
def install(self, spec, prefix):
make("prefix=%s" % prefix, "install")