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Add mpi support to R (#4286)

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Tom Merrick 2017-05-18 11:24:40 -05:00 committed by Adam J. Stewart
parent a29921b995
commit 5486d021d6
2 changed files with 93 additions and 0 deletions
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55
var/spack/repos/builtin/packages/r-rmpi/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RRmpi(RPackage):
"""An interface (wrapper) to MPI APIs. It also provides interactive R
manager and worker environment."""
homepage = "http://www.stats.uwo.ca/faculty/yu/Rmpi"
url = "https://cran.r-project.org/src/contrib/Rmpi_0.6-6.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/Rmpi"
version('0.6-6', '59ae8ce62ff0ff99342d53942c745779')
depends_on('mpi')
depends_on('r@2.15.1:')
def install(self, spec, prefix):
if 'mpich' in spec:
Rmpi_type = 'MPICH'
elif 'mvapich' in spec:
Rmpi_type = 'MVAPICH'
else:
Rmpi_type = 'OPENMPI'
my_mpi = spec['mpi']
R('CMD', 'INSTALL',
'--configure-args=--with-Rmpi-type=%s' % Rmpi_type +
' --with-mpi=%s' % my_mpi.prefix,
'--library={0}'.format(self.module.r_lib_dir),
self.stage.source_path)

38
var/spack/repos/builtin/packages/r-snow/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RSnow(RPackage):
"""Support for simple parallel computing in R."""
homepage = "https://cran.r-project.org/web/packages/snow/index.html"
url = "https://cran.r-project.org/src/contrib/snow_0.4-2.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/snow"
version('0.4-2', 'afc7b0dfd4518aedb6fc81712fd2ac70')
depends_on('r-rmpi', type='run')
depends_on('r@2.13.1:', type=('build', 'run'))