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New package: py-pathml (#32566)

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* [py-pathml Farber] Created package

* [pathml Farber] Dependencies added

* [py-pathml] Corrected dependency

* [py-pathml] Added types

* [py-pathml] depends on py-h5py

* [py-pathml] py-opencv-contrib-python -> opencv+python3+contrib

* [py-pathml] added spack import and fixed setuptools type

* [py-pathml] update import

* [py-pathml] opencv no longer has +contrib

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
This commit is contained in:
Jen Herting
2022-10-07 17:32:43 -04:00
committed by GitHub
parent b3cfcebf94
commit 5560bbf97e
1 changed files with 34 additions and 0 deletions
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var/spack/repos/builtin/packages/py-pathml/package.py Normal file
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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyPathml(PythonPackage):
"""An open-source toolkit for computational pathology and machine learning."""
homepage = "https://github.com/Dana-Farber-AIOS/pathml"
pypi = "pathml/pathml-2.1.0.tar.gz"
version("2.1.0", sha256="462bb2f16452dddad310c30f62678a1336ce492263355fd6722c07ee4840ea6a")
depends_on("py-setuptools@42:", type="build")
depends_on("py-numpy@1.16.4:", type=("build", "run"))
depends_on("py-pandas", type=("build", "run"))
depends_on("py-scipy", type=("build", "run"))
depends_on("py-pydicom", type=("build", "run"))
depends_on("py-statsmodels", type=("build", "run"))
depends_on("py-openslide-python", type=("build", "run"))
depends_on("py-matplotlib", type=("build", "run"))
depends_on("py-scikit-image", type=("build", "run"))
depends_on("py-scikit-learn", type=("build", "run"))
depends_on("py-dask +distributed", type=("build", "run"))
depends_on("py-anndata@0.7.6:", type=("build", "run"))
depends_on("py-scanpy", type=("build", "run"))
depends_on("py-torch", type=("build", "run"))
depends_on("opencv+python3", type=("build", "run"))
depends_on("py-python-bioformats@4.0.0:", type=("build", "run"))
depends_on("py-loguru", type=("build", "run"))
depends_on("py-h5py", type=("build", "run"))