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hdf5: a follow-up to #18937 (#23820)

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This commit is contained in:
Sergey Kosukhin 2021-06-30 02:34:12 +02:00 committed by GitHub
parent a2b7f9997d
commit 55dd306790
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23
6 changed files with 168 additions and 824 deletions
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90
var/spack/repos/builtin/packages/hdf5/1.10.7_cmake.patch
View File

@ -1,90 +0,0 @@
diff --git a/c++/src/CMakeLists.txt b/c++/src/CMakeLists.txt
index 8608c67..4b1a2d6 100644
--- a/c++/src/CMakeLists.txt
+++ b/c++/src/CMakeLists.txt
@@ -209,7 +209,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5c++
${HDF5_BINARY_DIR}/CMakeFiles/h5fc
diff --git a/hl/c++/src/CMakeLists.txt b/hl/c++/src/CMakeLists.txt
index 1eac9fe..e488656 100644
--- a/hl/c++/src/CMakeLists.txt
+++ b/hl/c++/src/CMakeLists.txt
@@ -120,7 +120,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5hlc++
diff --git a/hl/src/CMakeLists.txt b/hl/src/CMakeLists.txt
index 785bdcf..427424e 100644
--- a/hl/src/CMakeLists.txt
+++ b/hl/src/CMakeLists.txt
@@ -152,7 +152,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5hlcc
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 329a2dc..97019fa 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -1282,7 +1282,11 @@ install (
)
if (NOT WIN32)
- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5cc
@@ -1294,6 +1298,20 @@ if (NOT WIN32)
PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
COMPONENT libraries
)
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ #legacy requires a different name
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
+ @ONLY
+ )
+ install (
+ FILES ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
+ DESTINATION ${HDF5_INSTALL_BIN_DIR}
+ PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
+ COMPONENT libraries
+ )
+ endif ()
endif ()
#-----------------------------------------------------------------------------

104
var/spack/repos/builtin/packages/hdf5/1.12.0_cmake.patch
View File

@ -1,104 +0,0 @@
diff --git a/c++/src/CMakeLists.txt b/c++/src/CMakeLists.txt
index 39f0f3a..9dc69d6 100644
--- a/c++/src/CMakeLists.txt
+++ b/c++/src/CMakeLists.txt
@@ -196,7 +196,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5c++
diff --git a/fortran/src/CMakeLists.txt b/fortran/src/CMakeLists.txt
index b5d1a60..22ed7fb 100644
--- a/fortran/src/CMakeLists.txt
+++ b/fortran/src/CMakeLists.txt
@@ -533,7 +533,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_Fortran_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_Fortran_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_Fortran_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_Fortran_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5fc
diff --git a/hl/c++/src/CMakeLists.txt b/hl/c++/src/CMakeLists.txt
index 866f372..6abd376 100644
--- a/hl/c++/src/CMakeLists.txt
+++ b/hl/c++/src/CMakeLists.txt
@@ -109,7 +109,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5hlc++
diff --git a/hl/src/CMakeLists.txt b/hl/src/CMakeLists.txt
index 55d84c7..857a390 100644
--- a/hl/src/CMakeLists.txt
+++ b/hl/src/CMakeLists.txt
@@ -133,7 +133,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5hlcc
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index f582056..d7ddee4 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -1272,7 +1272,11 @@ install (
)
if (NOT WIN32)
- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5cc
@@ -1284,4 +1288,18 @@ if (NOT WIN32)
PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
COMPONENT libraries
)
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ #legacy requires a different name
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
+ @ONLY
+ )
+ install (
+ FILES ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
+ DESTINATION ${HDF5_INSTALL_BIN_DIR}
+ PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
+ COMPONENT libraries
+ )
+ endif ()
endif ()

362
var/spack/repos/builtin/packages/hdf5/1.8.21_cmake.patch
View File

@ -1,362 +0,0 @@
diff --git a/c++/src/CMakeLists.txt b/c++/src/CMakeLists.txt
index 9b9b745..3f05fa0 100644
--- a/c++/src/CMakeLists.txt
+++ b/c++/src/CMakeLists.txt
@@ -178,7 +178,11 @@ install (
)
if (NOT WIN32)
- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5c++
diff --git a/config/cmake_ext_mod/FindSZIP.cmake b/config/cmake_ext_mod/FindSZIP.cmake
index 699be85..846a3d1 100644
--- a/config/cmake_ext_mod/FindSZIP.cmake
+++ b/config/cmake_ext_mod/FindSZIP.cmake
@@ -5,140 +5,112 @@
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
+#########################################################################
+
+# - Derived from the FindTiff.cmake and FindJPEG.cmake that is included with cmake
+# FindSZIP
-# - Find SZIP library
-# - Derived from the FindTiff.cmake that is included with cmake
# Find the native SZIP includes and library
-# This module defines
-# SZIP_INCLUDE_DIRS, where to find tiff.h, etc.
-# SZIP_LIBRARIES, libraries to link against to use SZIP.
-# SZIP_FOUND, If false, do not try to use SZIP.
-# also defined, but not for general use are
-# SZIP_LIBRARY, where to find the SZIP library.
-# SZIP_LIBRARY_DEBUG - Debug version of SZIP library
-# SZIP_LIBRARY_RELEASE - Release Version of SZIP library
-# message (STATUS "Finding SZIP library and headers..." )
+# Imported targets
+##################
-############################################
+# This module defines the following :prop_tgt:`IMPORTED` targets:
#
-# Check the existence of the libraries.
+# SZIP::SZIP
+# The SZIP library, if found.
#
-############################################
-# This macro was taken directly from the FindQt4.cmake file that is included
-# with the CMake distribution. This is NOT my work. All work was done by the
-# original authors of the FindQt4.cmake file. Only minor modifications were
-# made to remove references to Qt and make this file more generally applicable
-#########################################################################
+# Result variables
+###################
-macro (SZIP_ADJUST_LIB_VARS basename)
- if (${basename}_INCLUDE_DIR)
+# This module will set the following variables in your project:
- # if only the release version was found, set the debug variable also to the release version
- if (${basename}_LIBRARY_RELEASE AND NOT ${basename}_LIBRARY_DEBUG)
- set (${basename}_LIBRARY_DEBUG ${${basename}_LIBRARY_RELEASE})
- set (${basename}_LIBRARY ${${basename}_LIBRARY_RELEASE})
- set (${basename}_LIBRARIES ${${basename}_LIBRARY_RELEASE})
- endif ()
+# SZIP_FOUND, true if the SZIP headers and libraries were found.
+# SZIP_INCLUDE_DIR, the directory containing the SZIP headers.
+# SZIP_INCLUDE_DIRS, the directory containing the SZIP headers.
+# SZIP_LIBRARIES, libraries to link against to use SZIP.
- # if only the debug version was found, set the release variable also to the debug version
- if (${basename}_LIBRARY_DEBUG AND NOT ${basename}_LIBRARY_RELEASE)
- set (${basename}_LIBRARY_RELEASE ${${basename}_LIBRARY_DEBUG})
- set (${basename}_LIBRARY ${${basename}_LIBRARY_DEBUG})
- set (${basename}_LIBRARIES ${${basename}_LIBRARY_DEBUG})
- endif ()
- if (${basename}_LIBRARY_DEBUG AND ${basename}_LIBRARY_RELEASE)
- # if the generator supports configuration types then set
- # optimized and debug libraries, or if the CMAKE_BUILD_TYPE has a value
- if (CMAKE_CONFIGURATION_TYPES OR CMAKE_BUILD_TYPE)
- set (${basename}_LIBRARY optimized ${${basename}_LIBRARY_RELEASE} debug ${${basename}_LIBRARY_DEBUG})
- else ()
- # if there are no configuration types and CMAKE_BUILD_TYPE has no value
- # then just use the release libraries
- set (${basename}_LIBRARY ${${basename}_LIBRARY_RELEASE} )
- endif ()
- set (${basename}_LIBRARIES optimized ${${basename}_LIBRARY_RELEASE} debug ${${basename}_LIBRARY_DEBUG})
- endif ()
+# Cache variables
+#################
- set (${basename}_LIBRARY ${${basename}_LIBRARY} CACHE FILEPATH "The ${basename} library")
+# The following variables may also be set:
- if (${basename}_LIBRARY)
- set (${basename}_FOUND 1)
- endif ()
- endif ()
+# SZIP_LIBRARY, where to find the SZIP library.
+# SZIP_LIBRARY_DEBUG - Debug version of SZIP library
+# SZIP_LIBRARY_RELEASE - Release Version of SZIP library
- # Make variables changeble to the advanced user
- MARK_AS_ADVANCED (${basename}_LIBRARY ${basename}_LIBRARY_RELEASE ${basename}_LIBRARY_DEBUG ${basename}_INCLUDE_DIR )
-endmacro ()
-
-
-# Look for the header file.
-set (SZIP_INCLUDE_SEARCH_DIRS
- $ENV{SZIP_INSTALL}/include
- $ENV{SZIP_INSTALL}/include/szip
- /usr/include
- /usr/include/szip
-)
-
-set (SZIP_LIB_SEARCH_DIRS
- $ENV{SZIP_INSTALL}/lib
- /usr/lib
-)
-
-set (SZIP_BIN_SEARCH_DIRS
- $ENV{SZIP_INSTALL}/bin
- /usr/bin
-)
-
-FIND_PATH (SZIP_INCLUDE_DIR
- NAMES szlib.h
- PATHS ${SZIP_INCLUDE_SEARCH_DIRS}
- NO_DEFAULT_PATH
-)
-
-if (WIN32)
- set (SZIP_SEARCH_DEBUG_NAMES "sz_d;libsz_d")
- set (SZIP_SEARCH_RELEASE_NAMES "sz;libsz;libszip")
-else ()
- set (SZIP_SEARCH_DEBUG_NAMES "sz_d")
- set (SZIP_SEARCH_RELEASE_NAMES "sz;szip")
-endif ()
+# message (STATUS "Finding SZIP library and headers..." )
+#########################################################################
-# Look for the library.
-FIND_LIBRARY (SZIP_LIBRARY_DEBUG
- NAMES ${SZIP_SEARCH_DEBUG_NAMES}
- PATHS ${SZIP_LIB_SEARCH_DIRS}
- NO_DEFAULT_PATH
-)
-
-FIND_LIBRARY (SZIP_LIBRARY_RELEASE
- NAMES ${SZIP_SEARCH_RELEASE_NAMES}
- PATHS ${SZIP_LIB_SEARCH_DIRS}
- NO_DEFAULT_PATH
-)
-
-SZIP_ADJUST_LIB_VARS (SZIP)
-
-if (SZIP_INCLUDE_DIR AND SZIP_LIBRARY)
- set (SZIP_FOUND 1)
- set (SZIP_LIBRARIES ${SZIP_LIBRARY})
- set (SZIP_INCLUDE_DIRS ${SZIP_INCLUDE_DIR})
- if (SZIP_LIBRARY_DEBUG)
- get_filename_component (SZIP_LIBRARY_PATH ${SZIP_LIBRARY_DEBUG} PATH)
- set (SZIP_LIB_DIR ${SZIP_LIBRARY_PATH})
- elseif ()
- get_filename_component (SZIP_LIBRARY_PATH ${SZIP_LIBRARY_RELEASE} PATH)
- set (SZIP_LIB_DIR ${SZIP_LIBRARY_PATH})
- endif ()
-else ()
- set (SZIP_FOUND 0)
- set (SZIP_LIBRARIES)
- set (SZIP_INCLUDE_DIRS)
-endif ()
+
+find_path(SZIP_INCLUDE_DIR szlib.h)
+
+set(szip_names ${SZIP_NAMES} sz szip szip-static libsz libszip libszip-static)
+foreach(name ${szip_names})
+ list (APPEND szip_names_debug "${name}d")
+endforeach()
+
+if(NOT SZIP_LIBRARY)
+ find_library(SZIP_LIBRARY_RELEASE NAMES ${szip_names})
+ find_library(SZIP_LIBRARY_DEBUG NAMES ${szip_names_debug})
+ include(SelectLibraryConfigurations)
+ select_library_configurations(SZIP)
+ mark_as_advanced(SZIP_LIBRARY_RELEASE SZIP_LIBRARY_DEBUG)
+endif()
+unset(szip_names)
+unset(szip_names_debug)
+
+if(SZIP_INCLUDE_DIR AND EXISTS "${SZIP_INCLUDE_DIR}/SZconfig.h")
+ file(STRINGS "${SZIP_INCLUDE_DIR}/SZconfig.h" szip_version_str
+ REGEX "^#define[\t ]+SZIP_PACKAGE_VERSION[\t ]+.*")
+
+ string(REGEX REPLACE "^#define[\t ]+SZIP_PACKAGE_VERSION[\t ]+([0-9]+).*"
+ "\\1" SZIP_VERSION "${szip_version_str}")
+ unset(szip_version_str)
+endif()
+
+include(FindPackageHandleStandardArgs)
+find_package_handle_standard_args(SZIP
+ REQUIRED_VARS SZIP_LIBRARY SZIP_INCLUDE_DIR
+ VERSION_VAR SZIP_VERSION)
+
+if(SZIP_FOUND)
+ set(SZIP_LIBRARIES ${SZIP_LIBRARY})
+ set(SZIP_INCLUDE_DIRS "${SZIP_INCLUDE_DIR}")
+
+ if(NOT TARGET SZIP::SZIP)
+ add_library(SZIP::SZIP UNKNOWN IMPORTED)
+ if(SZIP_INCLUDE_DIRS)
+ set_target_properties(SZIP::SZIP PROPERTIES
+ INTERFACE_INCLUDE_DIRECTORIES "${SZIP_INCLUDE_DIRS}")
+ endif()
+ if(EXISTS "${SZIP_LIBRARY}")
+ set_target_properties(SZIP::SZIP PROPERTIES
+ IMPORTED_LINK_INTERFACE_LANGUAGES "C"
+ IMPORTED_LOCATION "${SZIP_LIBRARY}")
+ endif()
+ if(EXISTS "${SZIP_LIBRARY_RELEASE}")
+ set_property(TARGET SZIP::SZIP APPEND PROPERTY
+ IMPORTED_CONFIGURATIONS RELEASE)
+ set_target_properties(SZIP::SZIP PROPERTIES
+ IMPORTED_LINK_INTERFACE_LANGUAGES_RELEASE "C"
+ IMPORTED_LOCATION_RELEASE "${SZIP_LIBRARY_RELEASE}")
+ endif()
+ if(EXISTS "${SZIP_LIBRARY_DEBUG}")
+ set_property(TARGET SZIP::SZIP APPEND PROPERTY
+ IMPORTED_CONFIGURATIONS DEBUG)
+ set_target_properties(SZIP::SZIP PROPERTIES
+ IMPORTED_LINK_INTERFACE_LANGUAGES_DEBUG "C"
+ IMPORTED_LOCATION_DEBUG "${SZIP_LIBRARY_DEBUG}")
+ endif()
+ endif()
+endif()
+
+mark_as_advanced(SZIP_LIBRARY SZIP_INCLUDE_DIR)
# Report the results.
if (NOT SZIP_FOUND)
@@ -146,36 +118,12 @@ if (NOT SZIP_FOUND)
"SZip was not found. Make sure SZIP_LIBRARY and SZIP_INCLUDE_DIR are set or set the SZIP_INSTALL environment variable."
)
if (NOT SZIP_FIND_QUIETLY)
- message (STATUS "${SZIP_DIR_MESSAGE}")
+ if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+ message (VERBOSE "${SZIP_DIR_MESSAGE}")
+ endif ()
else ()
if (SZIP_FIND_REQUIRED)
message (FATAL_ERROR "SZip was NOT found and is Required by this project")
endif ()
endif ()
endif ()
-
-if (SZIP_FOUND)
- include (CheckSymbolExists)
- #############################################
- # Find out if SZIP was build using dll's
- #############################################
- # Save required variable
- set (CMAKE_REQUIRED_INCLUDES_SAVE ${CMAKE_REQUIRED_INCLUDES})
- set (CMAKE_REQUIRED_FLAGS_SAVE ${CMAKE_REQUIRED_FLAGS})
- # Add SZIP_INCLUDE_DIR to CMAKE_REQUIRED_INCLUDES
- set (CMAKE_REQUIRED_INCLUDES "${CMAKE_REQUIRED_INCLUDES};${SZIP_INCLUDE_DIRS}")
-
- # Restore CMAKE_REQUIRED_INCLUDES and CMAKE_REQUIRED_FLAGS variables
- set (CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES_SAVE})
- set (CMAKE_REQUIRED_FLAGS ${CMAKE_REQUIRED_FLAGS_SAVE})
- #
- #############################################
-endif ()
-
-if (FIND_SZIP_DEBUG)
- message (STATUS "SZIP_INCLUDE_DIR: ${SZIP_INCLUDE_DIR}")
- message (STATUS "SZIP_INCLUDE_DIRS: ${SZIP_INCLUDE_DIRS}")
- message (STATUS "SZIP_LIBRARY_DEBUG: ${SZIP_LIBRARY_DEBUG}")
- message (STATUS "SZIP_LIBRARY_RELEASE: ${SZIP_LIBRARY_RELEASE}")
- message (STATUS "CMAKE_BUILD_TYPE: ${CMAKE_BUILD_TYPE}")
-endif ()
diff --git a/hl/c++/src/CMakeLists.txt b/hl/c++/src/CMakeLists.txt
index 7949b73..a633bdd 100644
--- a/hl/c++/src/CMakeLists.txt
+++ b/hl/c++/src/CMakeLists.txt
@@ -102,7 +102,11 @@ install (
)
if (NOT WIN32)
- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5hlc++
diff --git a/hl/src/CMakeLists.txt b/hl/src/CMakeLists.txt
index d570265..e652ed3 100644
--- a/hl/src/CMakeLists.txt
+++ b/hl/src/CMakeLists.txt
@@ -118,7 +118,11 @@ install (
)
if (NOT WIN32)
- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5hlcc
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 4d2f1bc..39cfbca 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -820,7 +820,11 @@ install (
)
if (NOT WIN32)
- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5cc
@@ -832,4 +836,18 @@ if (NOT WIN32)
PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
COMPONENT libraries
)
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ #legacy requires a different name
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
+ @ONLY
+ )
+ install (
+ FILES ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
+ DESTINATION ${HDF5_INSTALL_BIN_DIR}
+ PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
+ COMPONENT libraries
+ )
+ endif ()
endif ()

121
var/spack/repos/builtin/packages/hdf5/1.8.22_cmake.patch
View File

@ -1,121 +0,0 @@
diff --git a/c++/src/CMakeLists.txt b/c++/src/CMakeLists.txt
index 65d1d43..9e4bf24 100644
--- a/c++/src/CMakeLists.txt
+++ b/c++/src/CMakeLists.txt
@@ -211,7 +211,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5c++
diff --git a/fortran/src/CMakeLists.txt b/fortran/src/CMakeLists.txt
index dd03439..f58dde9 100644
--- a/fortran/src/CMakeLists.txt
+++ b/fortran/src/CMakeLists.txt
@@ -595,7 +595,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_Fortran_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_Fortran_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_Fortran_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_Fortran_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5fc
diff --git a/hl/c++/src/CMakeLists.txt b/hl/c++/src/CMakeLists.txt
index 1eac9fe..e488656 100644
--- a/hl/c++/src/CMakeLists.txt
+++ b/hl/c++/src/CMakeLists.txt
@@ -120,7 +120,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5hlc++
diff --git a/hl/fortran/src/CMakeLists.txt b/hl/fortran/src/CMakeLists.txt
index b309e92..c889736 100644
--- a/hl/fortran/src/CMakeLists.txt
+++ b/hl/fortran/src/CMakeLists.txt
@@ -260,7 +260,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_Fortran_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_Fortran_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_Fortran_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_Fortran_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5hlfc
diff --git a/hl/src/CMakeLists.txt b/hl/src/CMakeLists.txt
index cc5aca5..d07f354 100644
--- a/hl/src/CMakeLists.txt
+++ b/hl/src/CMakeLists.txt
@@ -148,7 +148,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5hlcc
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 217c55d..521d3fd 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -1129,7 +1129,11 @@ install (
)
if (NOT WIN32)
- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5cc
@@ -1141,4 +1145,18 @@ if (NOT WIN32)
PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
COMPONENT libraries
)
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ #legacy requires a different name
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
+ @ONLY
+ )
+ install (
+ FILES ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
+ DESTINATION ${HDF5_INSTALL_BIN_DIR}
+ PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
+ COMPONENT libraries
+ )
+ endif ()
endif ()

62
var/spack/repos/builtin/packages/hdf5/nag.mpi.libtool.patch
View File

@ -1,62 +0,0 @@
--- a/bin/ltmain.sh
+++ b/bin/ltmain.sh
@@ -8881,7 +8881,8 @@ func_mode_link ()
xlcverstring="$wl-compatibility_version $wl$minor_current $wl-current_version $wl$minor_current.$revision"
verstring="-compatibility_version $minor_current -current_version $minor_current.$revision"
# On Darwin other compilers
- case $CC in
+ func_cc_basename $CC
+ case $func_cc_basename_result in
nagfor*)
verstring="$wl-compatibility_version $wl$minor_current $wl-current_version $wl$minor_current.$revision"
;;
--- a/configure
+++ b/configure
@@ -12817,6 +12817,15 @@ func_cc_basename ()
compile | *[\\/]compile | ccache | *[\\/]ccache ) ;;
distcc | *[\\/]distcc | purify | *[\\/]purify ) ;;
\-*) ;;
+ mpicc | *[\\/]mpicc | \
+ mpic++ | *[\\/]mpic++ | mpicxx | *[\\/]mpicxx | mpiCC | *[\\/]mpiCC | \
+ mpif77 | *[\\/]mpif77 | mpif90 | *[\\/]mpif90 | mpifort | *[\\/]mpifort )
+ # OpenMPI or MPICH wrapper
+ mpi_cc_temp=
+ mpi_show=`$cc_temp -show 2>/dev/null`
+ test $? -eq 0 && mpi_cc_temp=`$ECHO "$mpi_show" | cut -d' ' -f1`
+ test -z $mpi_cc_temp >/dev/null 2>&1 || cc_temp=$mpi_cc_temp
+ break;;
*) break;;
esac
done
@@ -33230,6 +33239,15 @@ func_cc_basename ()
compile | *[\\/]compile | ccache | *[\\/]ccache ) ;;
distcc | *[\\/]distcc | purify | *[\\/]purify ) ;;
\-*) ;;
+ mpicc | *[\\/]mpicc | \
+ mpic++ | *[\\/]mpic++ | mpicxx | *[\\/]mpicxx | mpiCC | *[\\/]mpiCC | \
+ mpif77 | *[\\/]mpif77 | mpif90 | *[\\/]mpif90 | mpifort | *[\\/]mpifort )
+ # OpenMPI or MPICH wrapper
+ mpi_cc_temp=
+ mpi_show=`$cc_temp -show 2>/dev/null`
+ test $? -eq 0 && mpi_cc_temp=`$ECHO "$mpi_show" | cut -d' ' -f1`
+ test -z $mpi_cc_temp >/dev/null 2>&1 || cc_temp=$mpi_cc_temp
+ break;;
*) break;;
esac
done
@@ -36300,6 +36318,15 @@ func_cc_basename ()
compile | *[\\/]compile | ccache | *[\\/]ccache ) ;;
distcc | *[\\/]distcc | purify | *[\\/]purify ) ;;
\-*) ;;
+ mpicc | *[\\/]mpicc | \
+ mpic++ | *[\\/]mpic++ | mpicxx | *[\\/]mpicxx | mpiCC | *[\\/]mpiCC | \
+ mpif77 | *[\\/]mpif77 | mpif90 | *[\\/]mpif90 | mpifort | *[\\/]mpifort )
+ # OpenMPI or MPICH wrapper
+ mpi_cc_temp=
+ mpi_show=`$cc_temp -show 2>/dev/null`
+ test $? -eq 0 && mpi_cc_temp=`$ECHO "$mpi_show" | cut -d' ' -f1`
+ test -z $mpi_cc_temp >/dev/null 2>&1 || cc_temp=$mpi_cc_temp
+ break;;
*) break;;
esac
done

253
var/spack/repos/builtin/packages/hdf5/package.py
View File

@ -3,9 +3,12 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
import shutil
import sys
import llnl.util.tty as tty
class Hdf5(CMakePackage):
"""HDF5 is a data model, library, and file format for storing and managing
@ -23,7 +26,9 @@ class Hdf5(CMakePackage):
test_requires_compiler = True
version('develop', branch='develop')
# The 'develop' version is renamed so that we could uninstall (or patch) it
# without affecting other develop version.
version('develop-1.13', branch='develop')
version('develop-1.12', branch='hdf5_1_12')
version('develop-1.10', branch='hdf5_1_10')
version('develop-1.8', branch='hdf5_1_8')
@ -66,17 +71,13 @@ class Hdf5(CMakePackage):
variant('tools', default=True, description='Enable building tools')
variant('mpi', default=True, description='Enable MPI support')
variant('szip', default=False, description='Enable szip support')
variant('pic', default=True,
description='Produce position-independent code (for shared libs)')
# Build HDF5 with API compatibility.
variant('api', default='default', description='Choose api compatibility for earlier version', values=('default', 'v114', 'v112', 'v110', 'v18', 'v16'), multi=False)
variant('api', default='default',
description='Choose api compatibility for earlier version',
values=('default', 'v114', 'v112', 'v110', 'v18', 'v16'),
multi=False)
conflicts('api=v114', when='@1.6:1.12.99', msg='v114 is not compatible with this release')
conflicts('api=v112', when='@1.6:1.10.99', msg='v112 is not compatible with this release')
conflicts('api=v110', when='@1.6:1.8.99', msg='v110 is not compatible with this release')
conflicts('api=v18', when='@1.6:1.6.99', msg='v18 is not compatible with this release')
depends_on('cmake@3.12:')
depends_on('cmake@3.12:', type='build')
depends_on('mpi', when='+mpi')
depends_on('java', type=('build', 'run'), when='+java')
@ -86,16 +87,24 @@ class Hdf5(CMakePackage):
depends_on('szip', when='+szip')
depends_on('zlib@1.1.2:')
# The compiler wrappers (h5cc, h5fc, etc.) run 'pkg-config'.
depends_on('pkgconfig', type='run')
conflicts('api=v114', when='@1.6:1.12.99',
msg='v114 is not compatible with this release')
conflicts('api=v112', when='@1.6:1.10.99',
msg='v112 is not compatible with this release')
conflicts('api=v110', when='@1.6:1.8.99',
msg='v110 is not compatible with this release')
conflicts('api=v18', when='@1.6:1.6.99',
msg='v18 is not compatible with this release')
# The Java wrappers and associated libhdf5_java library
# were first available in 1.10
conflicts('+java', when='@:1.9')
# The Java wrappers cannot be built without shared libs.
conflicts('+java', when='~shared')
# Earlier versions of HDF5 will not correctly find szip without the patches
# in the <version>_cmake.patch files
conflicts('+szip', when='@:1.8.19,1.9.0:1.10.5')
# There are several officially unsupported combinations of the features:
# 1. Thread safety is not guaranteed via high-level C-API but in some cases
# it works.
@ -147,20 +156,6 @@ class Hdf5(CMakePackage):
patch('hdf5_1.8_gcc10.patch', when='@:1.8.21',
sha256='0e20187cda3980a4fdff410da92358b63de7ebef2df1d7a425371af78e50f666')
# Libtool fails to recognize NAG compiler behind the MPI wrappers and apply
# correct linker flags enabling shared libraries. # We support only versions
# based on Libtool 2.4.6.
patch('nag.mpi.libtool.patch', when='@1.8.18:%nag+fortran+mpi+shared')
patch('1.12.0_cmake.patch', when='@1.12.0',
sha256='e5b3bc2eecb693e88ce084dfceb35fdce68a0749945173c4bff7cf29fa81de4c')
patch('1.10.7_cmake.patch', when='@1.10.6:1.10.7',
sha256='dd9491bbe833b13929cb14b52137f7f44a539b4bfc89fc31e6e50a36e3e1b171')
patch('1.8.22_cmake.patch', when='@1.8.22',
sha256='2ca847df0f4aa24e8fe9aa7f156d48aae505a0226ca8df5d3e9b21d8087035bd')
patch('1.8.21_cmake.patch', when='@1.8.21',
sha256='b6a39255b2cc4fdf5767969a3f0cf83fc278b1750221b55ad48352a6ee3e4071')
# The argument 'buf_size' of the C function 'h5fget_file_image_c' is
# declared as intent(in) though it is modified by the invocation. As a
# result, aggressive compilers such as Fujitsu's may do a wrong
@ -177,28 +172,41 @@ def patch(self):
'fortran/src/H5Fff_F03.f90',
string=True, ignore_absent=True)
filter_compiler_wrappers('h5cc', 'h5c++', 'h5fc',
'h5pcc', 'h5pfc', relative_root='bin')
# The parallel compiler wrappers (i.e. h5pcc, h5pfc, etc.) reference MPI
# compiler wrappers and do not need to be changed.
filter_compiler_wrappers('h5cc', 'h5hlcc',
'h5fc', 'h5hlfc',
'h5c++', 'h5hlc++',
relative_root='bin')
def url_for_version(self, version):
url = "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-{0}/hdf5-{1}/src/hdf5-{1}.tar.gz"
return url.format(version.up_to(2), version)
def flag_handler(self, name, flags):
if '+pic' in self.spec:
if name == "cflags":
flags.append(self.compiler.cc_pic_flag)
elif name == "cxxflags":
flags.append(self.compiler.cxx_pic_flag)
elif name == "fflags":
flags.append(self.compiler.fc_pic_flag)
cmake_flags = []
# Quiet warnings/errors about implicit declaration of functions in C99
if name == "cflags":
if "%clang" in self.spec or "%gcc" in self.spec:
flags.append("-Wno-implicit-function-declaration")
if "clang" in self.compiler.cc or "gcc" in self.compiler.cc:
# Quiet warnings/errors about implicit declaration of functions
# in C99:
cmake_flags.append("-Wno-implicit-function-declaration")
if self.spec.satisfies('@:1.8.12~shared'):
# More recent versions set CMAKE_POSITION_INDEPENDENT_CODE to
# True and build with PIC flags.
cmake_flags.append(self.compiler.cc_pic_flag)
elif name == 'cxxflags':
if self.spec.satisfies('@:1.8.12+cxx~shared'):
cmake_flags.append(self.compiler.cxx_pic_flag)
elif name == "fflags":
if self.spec.satisfies('@:1.8.12+fortran~shared'):
cmake_flags.append(self.compiler.fc_pic_flag)
elif name == "ldlibs":
if '+fortran %fj' in self.spec:
cmake_flags.extend(['-lfj90i', '-lfj90f',
'-lfjsrcinfo', '-lelf'])
return (None, None, flags)
return flags, None, (cmake_flags or None)
@property
def libs(self):
@ -220,10 +228,32 @@ def libs(self):
query2libraries = {
tuple(): ['libhdf5'],
('cxx', 'fortran', 'hl', 'java'): [
'libhdf5hl_fortran',
# When installed with Autotools, the basename of the real
# library file implementing the High-level Fortran interface is
# 'libhdf5hl_fortran'. Starting versions 1.8.22, 1.10.5 and
# 1.12.0, the Autotools installation also produces a symbolic
# link 'libhdf5_hl_fortran.<so/a>' to
# 'libhdf5hl_fortran.<so/a>'. Note that in the case of the
# dynamic library, the latter is a symlink to the real sonamed
# file 'libhdf5_fortran.so.<abi-version>'. This means that all
# dynamically linked executables/libraries of the dependent
# packages need 'libhdf5_fortran.so.<abi-version>' with the same
# DT_SONAME entry. However, the CMake installation (at least
# starting version 1.8.10) does not produce it. Instead, the
# basename of the library file is 'libhdf5_hl_fortran'. Which
# means that switching to CMake requires rebuilding of all
# dependant packages that use the High-level Fortran interface.
# Therefore, we do not try to preserve backward compatibility
# with Autotools installations by creating symlinks. The only
# packages that could benefit from it would be those that
# hardcode the library name in their building systems. Such
# packages should simply be patched.
'libhdf5_hl_fortran',
'libhdf5_hl_f90cstub',
'libhdf5_hl_cpp',
'libhdf5_hl',
'libhdf5_fortran',
'libhdf5_f90cstub',
'libhdf5_java',
'libhdf5',
],
@ -233,9 +263,11 @@ def libs(self):
'libhdf5',
],
('fortran', 'hl'): [
'libhdf5hl_fortran',
'libhdf5_hl_fortran',
'libhdf5_hl_f90cstub',
'libhdf5_hl',
'libhdf5_fortran',
'libhdf5_f90cstub',
'libhdf5',
],
('hl',): [
@ -244,6 +276,7 @@ def libs(self):
],
('cxx', 'fortran'): [
'libhdf5_fortran',
'libhdf5_f90cstub',
'libhdf5_cpp',
'libhdf5',
],
@ -253,6 +286,7 @@ def libs(self):
],
('fortran',): [
'libhdf5_fortran',
'libhdf5_f90cstub',
'libhdf5',
],
('java',): [
@ -269,6 +303,10 @@ def libs(self):
libraries, root=self.prefix, shared=shared, recursive=True
)
@when('@:1.8.21,1.10.0:1.10.5+szip')
def setup_build_environment(self, env):
env.set('SZIP_INSTALL', self.spec['szip'].prefix)
@run_before('cmake')
def fortran_check(self):
if '+fortran' in self.spec and not self.compiler.fc:
@ -278,15 +316,27 @@ def fortran_check(self):
def cmake_args(self):
spec = self.spec
# Always enable this option. This does not actually enable any
# features: it only *allows* the user to specify certain
# combinations of other arguments. Enabling it just skips a
# sanity check in configure, so this doesn't merit a variant.
if spec.satisfies('@:1.8.15+shared'):
tty.warn('hdf5@:1.8.15+shared does not produce static libraries')
args = [
# Always enable this option. This does not actually enable any
# features: it only *allows* the user to specify certain
# combinations of other arguments.
self.define('ALLOW_UNSUPPORTED', True),
# Speed-up the building by skipping the examples:
self.define('HDF5_BUILD_EXAMPLES', False),
self.define(
'BUILD_TESTING',
self.run_tests or
# Version 1.8.22 fails to build the tools when shared libraries
# are enabled but the tests are disabled.
spec.satisfies('@1.8.22+shared+tools')),
self.define('HDF5_ENABLE_Z_LIB_SUPPORT', True),
self.define_from_variant('HDF5_ENABLE_SZIP_SUPPORT', 'szip'),
self.define_from_variant('HDF5_ENABLE_SZIP_ENCODING', 'szip'),
self.define_from_variant('BUILD_SHARED_LIBS', 'shared'),
self.define('ONLY_SHARED_LIBS', False),
self.define_from_variant('HDF5_ENABLE_PARALLEL', 'mpi'),
self.define_from_variant('HDF5_ENABLE_THREADSAFE', 'threadsafe'),
self.define_from_variant('HDF5_BUILD_HL_LIB', 'hl'),
@ -296,56 +346,89 @@ def cmake_args(self):
self.define_from_variant('HDF5_BUILD_TOOLS', 'tools')
]
if '+szip' in spec:
args.append(self.define('HDF5_ENABLE_SZIP_ENCODING', True))
api = spec.variants['api'].value
if api != 'default':
args.append(self.define('DEFAULT_API_VERSION', api))
# The variable CMAKE_POSITION_INDEPENDENT_CODE is set to True by default in
# HDF5 Cmake code; this should insure that it is off if '~pic' in spec. The
# flags that were previously set for '+pic' in the Autotools version are kept
# in case CMake doesn't set them as expected. Both the 'pic' variant and the
# CMAKE_POSITION_INDEPENDENT_CODE variable are True by default, but '~pic'
# should disable them both.
args.append(self.define_from_variant('CMAKE_POSITION_INDEPENDENT_CODE', 'pic'))
if '+pic' in spec:
# use global spack compiler flags
_flags = self.compiler.cc_pic_flag
_flags += " " + ' '.join(spec.compiler_flags['cflags'])
args.append('CFLAGS={0}'.format(_flags))
if '+cxx' in spec:
_flags = self.compiler.cxx_pic_flag
_flags += " " + ' '.join(spec.compiler_flags['cxxflags'])
args.append('CXXFLAGS={0}'.format(_flags))
if '+fortran' in spec:
_flags = self.compiler.fc_pic_flag
_flags += " " + ' '.join(spec.compiler_flags['fflags'])
args.append('FCFLAGS={0}'.format(_flags))
# Fujitsu Compiler does not add Fortran runtime in rpath.
if '+fortran %fj' in spec:
args.append('LDFLAGS=-lfj90i -lfj90f -lfjsrcinfo -lelf')
if '+mpi' in spec:
# The HDF5 configure script warns if cxx and mpi are enabled
# together. There doesn't seem to be a real reason for this, except
# that parts of the MPI interface are not accessible via the C++
# interface. Since they are still accessible via the C interface,
# this is not actually a problem.
args.append('CC=%s' % self.spec['mpi'].mpicc)
args.append(self.define('CMAKE_C_COMPILER', spec['mpi'].mpicc))
if '+cxx' in self.spec:
args.append('CXX=%s' % self.spec['mpi'].mpicxx)
args.append(self.define('CMAKE_CXX_COMPILER',
spec['mpi'].mpicxx))
if '+fortran' in self.spec:
args.append('FC=%s' % self.spec['mpi'].mpifc)
args.append(self.define('CMAKE_Fortran_COMPILER',
spec['mpi'].mpifc))
return args
@run_after('install')
def ensure_parallel_compiler_wrappers(self):
# When installed with Autotools and starting at least version 1.8.10,
# the package produces C compiler wrapper called either 'h5cc' (when MPI
# support is disabled) or 'h5pcc' (when MPI support is enabled). The
# CMake installation produces the wrapper called 'h5cc' (regardless of
# whether MPI support is enabled) only starting versions 1.8.21, 1.10.2
# and 1.12.0. The current develop versions also produce 'h5pcc' when MPI
# support is enabled and the file is identical to 'h5cc'. Here, we make
# sure that 'h5pcc' is available when MPI support is enabled (only for
# versions that generate 'h5cc').
if self.spec.satisfies('@1.8.21:1.8.22,1.10.2:1.10.7,1.12.0+mpi'):
with working_dir(self.prefix.bin):
# No try/except here, fix the condition above instead:
symlink('h5cc', 'h5pcc')
# The same as for 'h5pcc'. However, the CMake installation produces the
# Fortran compiler wrapper called 'h5fc' only starting versions 1.8.22,
# 1.10.6 and 1.12.0. The current develop versions do not produce 'h5pfc'
# at all. Here, we make sure that 'h5pfc' is available when Fortran and
# MPI support are enabled (only for versions that generate 'h5fc').
if self.spec.satisfies('@1.8.22:1.8.999,'
'1.10.6:1.10.999,'
'1.12.0:1.12.999,'
'develop:'
'+fortran+mpi'):
with working_dir(self.prefix.bin):
# No try/except here, fix the condition above instead:
symlink('h5fc', 'h5pfc')
@run_after('install')
def fix_package_config(self):
# We need to fix the pkg-config files, which are also used by the
# compiler wrappers. The files are created starting versions 1.8.21,
# 1.10.2 and 1.12.0. However, they are broken (except for the version
# 1.8.22): the files are named <name>-<version>.pc but reference <name>
# packages. This was fixed in the develop versions at some point: the
# files started referencing <name>-<version> packages but got broken
# again: the files got names <name>.pc but references had not been
# updated accordingly. Another issue, which we address here, is that
# some Linux distributions install pkg-config files named hdf5.pc and we
# want to override them. Therefore, the following solution makes sure
# that each <name>-<version>.pc file is symlinked by <name>.pc and all
# references to <name>-<version> packages in the original files are
# replaced with references to <name> packages.
pc_files = find(self.prefix.lib.pkgconfig, 'hdf5*.pc', recursive=False)
if not pc_files:
# This also tells us that the pkgconfig directory does not exist.
return
# Replace versioned references in all pkg-config files:
filter_file(
r'(Requires(?:\.private)?:.*)(hdf5[^\s,]*)(?:-[^\s,]*)(.*)',
r'\1\2\3', *pc_files, backup=False)
# Create non-versioned symlinks to the versioned pkg-config files:
with working_dir(self.prefix.lib.pkgconfig):
for f in pc_files:
src_filename = os.path.basename(f)
version_sep_idx = src_filename.find('-')
if version_sep_idx > -1:
tgt_filename = src_filename[:version_sep_idx] + '.pc'
if not os.path.exists(tgt_filename):
symlink(src_filename, tgt_filename)
@run_after('install')
@on_package_attributes(run_tests=True)
def check_install(self):