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jellyfish: add variants for python and ruby bindings (#33832)

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Co-authored-by: teachers-uk-net <stuart.morrison@kcl.ac.uk>
This commit is contained in:
Bernhard Kaindl 2022-12-05 22:10:57 +01:00 committed by GitHub
parent 64d957dece
commit 56072172f5
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1 changed files with 22 additions and 7 deletions
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29
var/spack/repos/builtin/packages/jellyfish/package.py
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@ -7,21 +7,36 @@
class Jellyfish(AutotoolsPackage): class Jellyfish(AutotoolsPackage):
"""JELLYFISH is a tool for fast, memory-efficient counting of k-mers in """JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA."""
DNA."""
homepage = "https://www.cbcb.umd.edu/software/jellyfish/" homepage = "https://www.cbcb.umd.edu/software/jellyfish/"
url = "https://github.com/gmarcais/Jellyfish/releases/download/v2.2.7/jellyfish-2.2.7.tar.gz" url = "https://github.com/gmarcais/Jellyfish/releases/download/v2.3.0/jellyfish-2.3.0.tar.gz"
list_url = "https://www.cbcb.umd.edu/software/jellyfish/" list_url = "https://github.com/gmarcais/Jellyfish/releases"
version("2.2.7", sha256="d80420b4924aa0119353a5b704f923863abc802e94efeb531593147c13e631a8") version("2.3.0", sha256="e195b7cf7ba42a90e5e112c0ed27894cd7ac864476dc5fb45ab169f5b930ea5a")
version(
"2.2.7",
sha256="d80420b4924aa0119353a5b704f923863abc802e94efeb531593147c13e631a8",
preferred=True,
)
version( version(
"1.1.11", "1.1.11",
sha256="496645d96b08ba35db1f856d857a159798c73cbc1eccb852ef1b253d1678c8e2", sha256="496645d96b08ba35db1f856d857a159798c73cbc1eccb852ef1b253d1678c8e2",
url="https://www.cbcb.umd.edu/software/jellyfish/jellyfish-1.1.11.tar.gz", url="https://www.cbcb.umd.edu/software/jellyfish/jellyfish-1.1.11.tar.gz",
) )
depends_on("perl", type=("build", "run")) depends_on("perl", when="@2.2.7:", type=("build", "run"))
depends_on("python", type=("build", "run")) variant("ruby", default=False, description="Enable ruby bindings")
# Info: python bindings exist, but are for python2 which is no longer supported in spack
extends("ruby@:2.6", when="+ruby")
patch("dna_codes.patch", when="@1.1.11") patch("dna_codes.patch", when="@1.1.11")
# v1.1.11 does not support language bindings
conflicts("+ruby", when="@1.1.11")
def configure_args(self):
if "+ruby" in self.spec:
return ["--enable-ruby-binding"]
return []