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Merge branch 'develop' into features/hwloc

Browse Source 
* develop: (85 commits)
  Make libxcb compile with gcc 4.9.
  disable parallel install for glib (found races)
  disable cairo-trace, which is incompatible with older libiberty.h.
  Fix LaunchMon on newer gcc versions.
  Simplify output redirection in spack.util.executable
  Allow completely empty config files.
  Update cmake package to use http in all URLs.
  Fix create, diy, edit, and repo commands to use multiple repos.
  Add namespace option to find command.
  Temporary fix: Clang is the default compiler on Mac OS X.
  Netcdf requires cmake >=2.8.12
  Mbedtls depends on cmake
  Update libtool to 2.4.6
  Update Julia to 0.4.3
  Make binutils build on OS X
  Add verbs and psm variants
  py-matplotlib: depend on freetype
  py-numpy: make blas/lapack optional dependencies
  qhull: apply patch to work with libc++'s standard library
  New package GNU tar
  ...
This commit is contained in:
Adam J. Stewart
2016-01-19 10:01:42 -06:00
parent 6985d2c914 01c5b53ba1
commit 58f18d5b12
502 changed files with 21540 additions and 1132 deletions
Download Patch File Download Diff File Expand all files Collapse all files

37
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from spack import *
class Imagemagick(Package):
"""ImageMagick is a image processing library"""
homepage = "http://www.imagemagic.org"
#-------------------------------------------------------------------------
# ImageMagick does not keep around anything but *-10 versions, so
# this URL may change. If you want the bleeding edge, you can
# uncomment it and see if it works but you may need to try to
# fetch a newer version (-6, -7, -8, -9, etc.) or you can stick
# wtih the older, stable, archived -10 versions below.
#
# TODO: would be nice if spack had a way to recommend avoiding a
# TODO: bleeding edge version, but not comment it out.
# -------------------------------------------------------------------------
# version('6.9.0-6', 'c1bce7396c22995b8bdb56b7797b4a1b',
# url="http://www.imagemagick.org/download/ImageMagick-6.9.0-6.tar.bz2")
#-------------------------------------------------------------------------
# *-10 versions are archived, so these versions should fetch reliably.
# -------------------------------------------------------------------------
version('6.8.9-10', 'aa050bf9785e571c956c111377bbf57c',
url="http://sourceforge.net/projects/imagemagick/files/old-sources/6.x/6.8/ImageMagick-6.8.9-10.tar.gz/download")
depends_on('libtool')
depends_on('jpeg')
depends_on('libpng')
depends_on('freetype')
depends_on('fontconfig')
depends_on('libtiff')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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from spack import *
class Mitos(Package):
"""Mitos is a library and a tool for collecting sampled memory
performance data to view with MemAxes"""
homepage = "https://github.com/llnl/Mitos"
url = "https://github.com/llnl/Mitos"
version('0.9.2',
git='https://github.com/llnl/Mitos.git',
commit='8cb143a2e8c00353ff531a781a9ca0992b0aaa3d')
version('0.9.1',
git='https://github.com/llnl/Mitos.git',
tag='v0.9.1')
depends_on('dyninst@8.2.1:')
depends_on('hwloc')
depends_on('mpi')
def install(self, spec, prefix):
with working_dir('spack-build', create=True):
cmake('..', *std_cmake_args)
make()
make("install")

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from spack import *
class R(Package):
"""
R is 'GNU S', a freely available language and environment for statistical computing and graphics which provides a
wide variety of statistical and graphical techniques: linear and nonlinear modelling, statistical tests, time series
analysis, classification, clustering, etc. Please consult the R project homepage for further information.
"""
homepage = "https://www.r-project.org"
url = "http://cran.cnr.berkeley.edu/src/base/R-3/R-3.1.2.tar.gz"
version('3.2.3', '1ba3dac113efab69e706902810cc2970')
version('3.2.2', '57cef5c2e210a5454da1979562a10e5b')
version('3.2.1', 'c2aac8b40f84e08e7f8c9068de9239a3')
version('3.2.0', '66fa17ad457d7e618191aa0f52fc402e')
version('3.1.3', '53a85b884925aa6b5811dfc361d73fc4')
version('3.1.2', '3af29ec06704cbd08d4ba8d69250ae74')
variant('external-lapack', default=False, description='Links to externally installed BLAS/LAPACK')
# Virtual dependencies
depends_on('blas', when='+external-lapack')
depends_on('lapack', when='+external-lapack')
# Concrete dependencies
depends_on('readline')
depends_on('ncurses')
depends_on('icu')
depends_on('glib')
depends_on('zlib')
depends_on('libtiff')
depends_on('jpeg')
depends_on('cairo')
depends_on('pango')
depends_on('freetype')
depends_on('tcl')
depends_on('tk')
def install(self, spec, prefix):
options = ['--prefix=%s' % prefix,
'--enable-R-shlib',
'--enable-BLAS-shlib']
if '+external-lapack' in spec:
options.extend(['--with-blas', '--with-lapack'])
configure(*options)
make()
make('install')

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--- SAMRAI/Makefile.in 2013-05-31 11:04:32.000000000 -0700
+++ SAMRAI/Makefile.in.notools 2014-05-30 10:31:15.135979900 -0700
@@ -8,7 +8,7 @@
##
#########################################################################
-default: library tools
+default: library
SAMRAI = @top_srcdir@
SUBDIR = .
@@ -135,7 +135,7 @@
done
$(MAKE) archive_remove_obj_names
-install: library tools
+install: library
$(INSTALL) -d -m 755 $(INSTDIR)/config
$(INSTALL) -d -m 755 $(INSTDIR)/lib
$(INSTALL) -d -m 755 $(INSTDIR)/bin

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from spack import *
class Samrai(Package):
"""SAMRAI (Structured Adaptive Mesh Refinement Application Infrastructure)
is an object-oriented C++ software library enables exploration of numerical,
algorithmic, parallel computing, and software issues associated with applying
structured adaptive mesh refinement (SAMR) technology in large-scale parallel
application development.
"""
homepage = "https://computation.llnl.gov/project/SAMRAI/"
url = "https://computation.llnl.gov/project/SAMRAI/download/SAMRAI-v3.9.1.tar.gz"
list_url = homepage
version('3.9.1', '232d04d0c995f5abf20d94350befd0b2')
version('3.8.0', 'c18fcffa706346bfa5828b36787ce5fe')
version('3.7.3', '12d574eacadf8c9a70f1bb4cd1a69df6')
version('3.7.2', 'f6a716f171c9fdbf3cb12f71fa6e2737')
version('3.6.3-beta', 'ef0510bf2893042daedaca434e5ec6ce')
version('3.5.2-beta', 'd072d9d681eeb9ada15ce91bea784274')
version('3.5.0-beta', '1ad18a319fc573e12e2b1fbb6f6b0a19')
version('3.4.1-beta', '00814cbee2cb76bf8302aff56bbb385b')
version('3.3.3-beta', '1db3241d3e1cab913dc310d736c34388')
version('3.3.2-beta', 'e598a085dab979498fcb6c110c4dd26c')
version('2.4.4', '04fb048ed0efe7c531ac10c81cc5f6ac')
depends_on("mpi")
depends_on("zlib")
depends_on("hdf5+mpi")
depends_on("boost")
# don't build tools with gcc
patch('no-tool-build.patch', when='%gcc')
# TODO: currently hard-coded to use openmpi - be careful!
def install(self, spec, prefix):
configure(
"--prefix=%s" % prefix,
"--with-CXX=%s" % spec['mpi'].prefix.bin + "/mpic++",
"--with-CC=%s" % spec['mpi'].prefix.bin + "/mpicc",
"--with-hdf5=%s" % spec['hdf5'].prefix,
"--with-boost=%s" % spec['boost'].prefix,
"--with-zlib=%s" % spec['zlib'].prefix,
"--without-blas",
"--without-lapack",
"--with-hypre=no",
"--with-petsc=no",
"--enable-opt",
"--disable-debug")
make()
make("install")

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from spack import *
class Activeharmony(Package):
"""Active Harmony: a framework for auto-tuning (the automated search for values to improve the performance of a target application)."""
homepage = "http://www.dyninst.org/harmony"
url = "http://www.dyninst.org/sites/default/files/downloads/harmony/ah-4.5.tar.gz"
version('4.5', 'caee5b864716d376e2c25d739251b2a9')
def install(self, spec, prefix):
make("CFLAGS=-O3")
make("install", 'PREFIX=%s' % prefix)
from spack import *

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class AdeptUtils(Package):
"""Utility libraries for LLNL performance tools."""
homepage = "https://github.com/llnl/adept-utils"
url = "https://github.com/llnl/adept-utils/archive/v1.0.tar.gz"
version('1.0.1', '731a310717adcb004d9d195130efee7d')
version('1.0', '5c6cd9badce56c945ac8551e34804397')
depends_on("boost")
depends_on("mpi")
def install(self, spec, prefix):
cmake(*std_cmake_args)
make()
make("install")

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from spack import *
from spack.util.environment import *
class Apex(Package):
homepage = "http://github.com/khuck/xpress-apex"
url = "http://github.com/khuck/xpress-apex/archive/v0.1.tar.gz"
version('0.1', '8b95f0c0313da1575960d3ad69f18e75')
depends_on("binutils+libiberty")
depends_on("boost@1.54:")
depends_on("cmake@2.8.12:")
depends_on("activeharmony@4.5:")
depends_on("ompt-openmp")
def install(self, spec, prefix):
path=get_path("PATH")
path.remove(spec["binutils"].prefix.bin)
path_set("PATH", path)
with working_dir("build", create=True):
cmake('-DBOOST_ROOT=%s' % spec['boost'].prefix,
'-DUSE_BFD=TRUE',
'-DBFD_ROOT=%s' % spec['binutils'].prefix,
'-DUSE_ACTIVEHARMONY=TRUE',
'-DACTIVEHARMONY_ROOT=%s' % spec['activeharmony'].prefix,
'-DUSE_OMPT=TRUE',
'-DOMPT_ROOT=%s' % spec['ompt-openmp'].prefix,
'..', *std_cmake_args)
make()
make("install")

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from spack import *
import os
import shutil
class Arpack(Package):
"""A collection of Fortran77 subroutines designed to solve large scale
eigenvalue problems.
"""
homepage = "http://www.caam.rice.edu/software/ARPACK/"
url = "http://www.caam.rice.edu/software/ARPACK/SRC/arpack96.tar.gz"
version('96', 'fffaa970198b285676f4156cebc8626e')
depends_on('blas')
depends_on('lapack')
def patch(self):
# Filter the cray makefile to make a spack one.
shutil.move('ARMAKES/ARmake.CRAY', 'ARmake.inc')
makefile = FileFilter('ARmake.inc')
# Be sure to use Spack F77 wrapper
makefile.filter('^FC.*', 'FC = f77')
makefile.filter('^FFLAGS.*', 'FFLAGS = -O2 -g')
# Set up some variables.
makefile.filter('^PLAT.*', 'PLAT = ')
makefile.filter('^home.*', 'home = %s' % os.getcwd())
makefile.filter('^BLASdir.*', 'BLASdir = %s' % self.spec['blas'].prefix)
makefile.filter('^LAPACKdir.*', 'LAPACKdir = %s' % self.spec['lapack'].prefix)
# build the library in our own prefix.
makefile.filter('^ARPACKLIB.*', 'ARPACKLIB = %s/libarpack.a' % os.getcwd())
def install(self, spec, prefix):
with working_dir('SRC'):
make('all')
mkdirp(prefix.lib)
install('libarpack.a', prefix.lib)

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from spack import *
class Asciidoc(Package):
""" A presentable text document format for writing articles, UNIX man
pages and other small to medium sized documents."""
homepage = "http://asciidoc.org"
url = "http://downloads.sourceforge.net/project/asciidoc/asciidoc/8.6.9/asciidoc-8.6.9.tar.gz"
version('8.6.9', 'c59018f105be8d022714b826b0be130a')
depends_on('libxml2')
depends_on('libxslt')
def install(self, spec, prefix):
configure('--prefix=%s' % prefix)
make()
make("install")

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from spack import *
class Atk(Package):
"""ATK provides the set of accessibility interfaces that are
implemented by other toolkits and applications. Using the ATK
interfaces, accessibility tools have full access to view and
control running applications."""
homepage = "https://developer.gnome.org/atk/"
url = "http://ftp.gnome.org/pub/gnome/sources/atk/2.14/atk-2.14.0.tar.xz"
version('2.14.0', 'ecb7ca8469a5650581b1227d78051b8b')
depends_on("glib")
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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from spack import *
from spack.util.executable import Executable
import os
class Atlas(Package):
"""
Automatically Tuned Linear Algebra Software, generic shared
ATLAS is an approach for the automatic generation and optimization of
numerical software. Currently ATLAS supplies optimized versions for the
complete set of linear algebra kernels known as the Basic Linear Algebra
Subroutines (BLAS), and a subset of the linear algebra routines in the
LAPACK library.
"""
homepage = "http://math-atlas.sourceforge.net/"
version('3.11.34', '0b6c5389c095c4c8785fd0f724ec6825',
url='http://sourceforge.net/projects/math-atlas/files/Developer%20%28unstable%29/3.11.34/atlas3.11.34.tar.bz2/download')
version('3.10.2', 'a4e21f343dec8f22e7415e339f09f6da',
url='http://downloads.sourceforge.net/project/math-atlas/Stable/3.10.2/atlas3.10.2.tar.bz2')
# TODO: make this provide BLAS once it works better. Create a way
# TODO: to mark "beta" packages and require explicit invocation.
# provides('blas')
def patch(self):
# Disable thraed check. LLNL's environment does not allow
# disabling of CPU throttling in a way that ATLAS actually
# understands.
filter_file(r'^\s+if \(thrchk\) exit\(1\);', 'if (0) exit(1);',
'CONFIG/src/config.c')
# TODO: investigate a better way to add the check back in
# TODO: using, say, MSRs. Or move this to a variant.
@when('@:3.10')
def install(self, spec, prefix):
with working_dir('ATLAS-Build', create=True):
configure = Executable('../configure')
configure('--prefix=%s' % prefix, '-C', 'ic', 'cc', '-C', 'if', 'f77', "--dylibs")
make()
make('check')
make('ptcheck')
make('time')
make("install")
def install(self, spec, prefix):
with working_dir('ATLAS-Build', create=True):
configure = Executable('../configure')
configure('--incdir=%s' % prefix.include,
'--libdir=%s' % prefix.lib,
'--cc=cc',
"--shared")
make()
make('check')
make('ptcheck')
make('time')
make("install")

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from spack import *
class Atop(Package):
"""Atop is an ASCII full-screen performance monitor for Linux"""
homepage = "http://www.atoptool.nl/index.php"
url = "http://www.atoptool.nl/download/atop-2.2-3.tar.gz"
version('2.2-3', '034dc1544f2ec4e4d2c739d320dc326d')
def install(self, spec, prefix):
make()
mkdirp(prefix.bin)
install("atop", join_path(prefix.bin, "atop"))
mkdirp(join_path(prefix.man, "man1"))
install(join_path("man", "atop.1"),
join_path(prefix.man, "man1", "atop.1"))

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from spack import *
class Autoconf(Package):
"""Autoconf -- system configuration part of autotools"""
homepage = "https://www.gnu.org/software/autoconf/"
url = "http://ftp.gnu.org/gnu/autoconf/autoconf-2.69.tar.gz"
version('2.69', '82d05e03b93e45f5a39b828dc9c6c29b')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Automaded(Package):
"""AutomaDeD (Automata-based Debugging for Dissimilar parallel
tasks) is a tool for automatic diagnosis of performance and
correctness problems in MPI applications. It creates
control-flow models of each MPI process and, when a failure
occurs, these models are leveraged to find the origin of
problems automatically. MPI calls are intercepted (using
wrappers) to create the models. When an MPI application hangs,
AutomaDeD creates a progress-dependence graph that helps
finding the process (or group of processes) that caused the hang.
"""
homepage = "https://github.com/llnl/AutomaDeD"
url = "https://github.com/llnl/AutomaDeD/archive/v1.0.tar.gz"
version('1.0', '16a3d4def2c4c77d0bc4b21de8b3ab03')
depends_on('mpi')
depends_on('boost')
depends_on('callpath')
def install(self, spec, prefix):
cmake("-DSTATE_TRACKER_WITH_CALLPATH=ON", *std_cmake_args)
make()
make("install")

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from spack import *
class Automake(Package):
"""Automake -- make file builder part of autotools"""
homepage = "http://www.gnu.org/software/automake/"
url = "http://ftp.gnu.org/gnu/automake/automake-1.14.tar.gz"
version('1.14.1', 'd052a3e884631b9c7892f2efce542d75')
depends_on('autoconf')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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from spack import *
class Bear(Package):
"""Bear is a tool that generates a compilation database for clang tooling from non-cmake build systems."""
homepage = "https://github.com/rizsotto/Bear"
url = "https://github.com/rizsotto/Bear/archive/2.0.4.tar.gz"
version('2.0.4', 'fd8afb5e8e18f8737ba06f90bd77d011')
depends_on("cmake")
depends_on("python")
def install(self, spec, prefix):
cmake('.', *std_cmake_args)
make("all")
make("install")

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from spack import *
from glob import glob
class Bib2xhtml(Package):
"""bib2xhtml is a program that converts BibTeX files into HTML."""
homepage = "http://www.spinellis.gr/sw/textproc/bib2xhtml/"
url='http://www.spinellis.gr/sw/textproc/bib2xhtml/bib2xhtml-v3.0-15-gf506.tar.gz'
version('3.0-15-gf506', 'a26ba02fe0053bbbf2277bdf0acf8645')
def url_for_version(self, v):
return ('http://www.spinellis.gr/sw/textproc/bib2xhtml/bib2xhtml-v%s.tar.gz' % v)
def install(self, spec, prefix):
# Add the bst include files to the install directory
bst_include = join_path(prefix.share, 'bib2xhtml')
mkdirp(bst_include)
for bstfile in glob('html-*bst'):
install(bstfile, bst_include)
# Install the script and point it at the user's favorite perl
# and the bst include directory.
mkdirp(prefix.bin)
install('bib2xhtml', prefix.bin)
filter_file(r'#!/usr/bin/perl',
'#!/usr/bin/env BSTINPUTS=%s perl' % bst_include,
join_path(prefix.bin, 'bib2xhtml'))

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--- binutils-2.24/libiberty/Makefile.in 2013-11-04 10:33:40.000000000 -0500
+++ binutils-2.24-fixes/libiberty/Makefile.in 2014-10-17 16:22:31.413655000 -0400
@@ -66,6 +66,7 @@
MAKEOVERRIDES =
TARGETLIB = ./libiberty.a
+TARGETLIBPIC = ./libiberty_pic.a
TESTLIB = ./testlib.a
LIBOBJS = @LIBOBJS@
@@ -355,27 +356,27 @@
# since it will be passed the multilib flags.
MULTIOSDIR = `$(CC) $(CFLAGS) -print-multi-os-directory`
install_to_libdir: all
- if test -n "${target_header_dir}"; then \
- ${mkinstalldirs} $(DESTDIR)$(libdir)/$(MULTIOSDIR); \
- $(INSTALL_DATA) $(TARGETLIB) $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIB)n; \
- ( cd $(DESTDIR)$(libdir)/$(MULTIOSDIR) ; chmod 644 $(TARGETLIB)n ;$(RANLIB) $(TARGETLIB)n ); \
- mv -f $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIB)n $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIB); \
- case "${target_header_dir}" in \
- /*) thd=${target_header_dir};; \
- *) thd=${includedir}/${target_header_dir};; \
- esac; \
- ${mkinstalldirs} $(DESTDIR)$${thd}; \
- for h in ${INSTALLED_HEADERS}; do \
- ${INSTALL_DATA} $$h $(DESTDIR)$${thd}; \
- done; \
- fi
+ ${mkinstalldirs} $(DESTDIR)$(libdir)/$(MULTIOSDIR); \
+ $(INSTALL_DATA) $(TARGETLIB) $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIB)n; \
+ $(INSTALL_DATA) pic/$(TARGETLIB) $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIBPIC)n; \
+ ( cd $(DESTDIR)$(libdir)/$(MULTIOSDIR) ; chmod 644 $(TARGETLIB)n ;$(RANLIB) $(TARGETLIB)n ); \
+ ( cd $(DESTDIR)$(libdir)/$(MULTIOSDIR) ; chmod 644 $(TARGETLIBPIC)n ;$(RANLIB) $(TARGETLIBPIC)n ); \
+ mv -f $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIB)n $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIB); \
+ mv -f $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIBPIC)n $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIBPIC); \
+ ${mkinstalldirs} $(DESTDIR)$${includedir}; \
+ for h in ${INSTALLED_HEADERS}; do \
+ ${INSTALL_DATA} $$h $(DESTDIR)$${includedir}; \
+ done;
@$(MULTIDO) $(FLAGS_TO_PASS) multi-do DO=install
install_to_tooldir: all
${mkinstalldirs} $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)
$(INSTALL_DATA) $(TARGETLIB) $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)/$(TARGETLIB)n
+ $(INSTALL_DATA) pic/$(TARGETLIB) $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)/$(TARGETLIBPIC)n
( cd $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR) ; chmod 644 $(TARGETLIB)n; $(RANLIB) $(TARGETLIB)n )
+ ( cd $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR) ; chmod 644 $(TARGETLIBPIC)n; $(RANLIB) $(TARGETLIBPIC)n )
mv -f $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)/$(TARGETLIB)n $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)/$(TARGETLIB)
+ mv -f $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)/$(TARGETLIBPIC)n $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)/$(TARGETLIBPIC)
@$(MULTIDO) $(FLAGS_TO_PASS) multi-do DO=install
# required-list was used when building a shared bfd/opcodes/libiberty

26
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@@ -0,0 +1,26 @@
--- old/opcodes/cr16-dis.c 2014-10-14 03:32:04.000000000 -0400
+++ new/opcodes/cr16-dis.c 2016-01-14 21:54:26.000000000 -0500
@@ -78,7 +78,7 @@
REG_ARG_TYPE;
/* Current opcode table entry we're disassembling. */
-const inst *instruction;
+extern const inst *instruction;
/* Current instruction we're disassembling. */
ins cr16_currInsn;
/* The current instruction is read into 3 consecutive words. */
@@ -86,12 +86,12 @@
/* Contains all words in appropriate order. */
ULONGLONG cr16_allWords;
/* Holds the current processed argument number. */
-int processing_argument_number;
+extern int processing_argument_number;
/* Nonzero means a IMM4 instruction. */
int imm4flag;
/* Nonzero means the instruction's original size is
incremented (escape sequence is used). */
-int size_changed;
+extern int size_changed;
/* Print the constant expression length. */

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from spack import *
class Binutils(Package):
"""GNU binutils, which contain the linker, assembler, objdump and others"""
homepage = "http://www.gnu.org/software/binutils/"
version('2.25', 'd9f3303f802a5b6b0bb73a335ab89d66',url="ftp://ftp.gnu.org/gnu/binutils/binutils-2.25.tar.bz2")
version('2.24', 'e0f71a7b2ddab0f8612336ac81d9636b',url="ftp://ftp.gnu.org/gnu/binutils/binutils-2.24.tar.bz2")
version('2.23.2', '4f8fa651e35ef262edc01d60fb45702e',url="ftp://ftp.gnu.org/gnu/binutils/binutils-2.23.2.tar.bz2")
version('2.20.1', '2b9dc8f2b7dbd5ec5992c6e29de0b764',url="ftp://ftp.gnu.org/gnu/binutils/binutils-2.20.1.tar.bz2")
# Add a patch that creates binutils libiberty_pic.a which is preferred by OpenSpeedShop and cbtf-krell
variant('krellpatch', default=False, description="build with openspeedshop based patch.")
variant('gold', default=True, description="build the gold linker")
patch('binutilskrell-2.24.patch', when='@2.24+krellpatch')
patch('cr16.patch')
variant('libiberty', default=False, description='Also install libiberty.')
def install(self, spec, prefix):
configure_args = [
'--prefix=%s' % prefix,
'--disable-dependency-tracking',
'--enable-interwork',
'--enable-multilib',
'--enable-shared',
'--enable-64-bit-bfd',
'--enable-targets=all',
'--with-sysroot=/']
if '+gold' in spec:
configure_args.append('--enable-gold')
if '+libiberty' in spec:
configure_args.append('--enable-install-libiberty')
configure(*configure_args)
make()
make("install")

17
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@@ -0,0 +1,17 @@
from spack import *
class Bison(Package):
"""Bison is a general-purpose parser generator that converts
an annotated context-free grammar into a deterministic LR or
generalized LR (GLR) parser employing LALR(1) parser tables."""
homepage = "http://www.gnu.org/software/bison/"
url = "http://ftp.gnu.org/gnu/bison/bison-3.0.tar.gz"
version('3.0.4', 'a586e11cd4aff49c3ff6d3b6a4c9ccf8')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

148
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@@ -0,0 +1,148 @@
from spack import *
class Boost(Package):
"""Boost provides free peer-reviewed portable C++ source
libraries, emphasizing libraries that work well with the C++
Standard Library.
Boost libraries are intended to be widely useful, and usable
across a broad spectrum of applications. The Boost license
encourages both commercial and non-commercial use.
"""
homepage = "http://www.boost.org"
url = "http://downloads.sourceforge.net/project/boost/boost/1.55.0/boost_1_55_0.tar.bz2"
list_url = "http://sourceforge.net/projects/boost/files/boost/"
list_depth = 2
version('1.60.0', '65a840e1a0b13a558ff19eeb2c4f0cbe')
version('1.59.0', '6aa9a5c6a4ca1016edd0ed1178e3cb87')
version('1.58.0', 'b8839650e61e9c1c0a89f371dd475546')
version('1.57.0', '1be49befbdd9a5ce9def2983ba3e7b76')
version('1.56.0', 'a744cf167b05d72335f27c88115f211d')
version('1.55.0', 'd6eef4b4cacb2183f2bf265a5a03a354')
version('1.54.0', '15cb8c0803064faef0c4ddf5bc5ca279')
version('1.53.0', 'a00d22605d5dbcfb4c9936a9b35bc4c2')
version('1.52.0', '3a855e0f919107e0ca4de4d84ad3f750')
version('1.51.0', '4b6bd483b692fd138aef84ed2c8eb679')
version('1.50.0', '52dd00be775e689f55a987baebccc462')
version('1.49.0', '0d202cb811f934282dea64856a175698')
version('1.48.0', 'd1e9a7a7f532bb031a3c175d86688d95')
version('1.47.0', 'a2dc343f7bc7f83f8941e47ed4a18200')
version('1.46.1', '7375679575f4c8db605d426fc721d506')
version('1.46.0', '37b12f1702319b73876b0097982087e0')
version('1.45.0', 'd405c606354789d0426bc07bea617e58')
version('1.44.0', 'f02578f5218f217a9f20e9c30e119c6a')
version('1.43.0', 'dd49767bfb726b0c774f7db0cef91ed1')
version('1.42.0', '7bf3b4eb841b62ffb0ade2b82218ebe6')
version('1.41.0', '8bb65e133907db727a2a825c5400d0a6')
version('1.40.0', 'ec3875caeac8c52c7c129802a8483bd7')
version('1.39.0', 'a17281fd88c48e0d866e1a12deecbcc0')
version('1.38.0', '5eca2116d39d61382b8f8235915cb267')
version('1.37.0', '8d9f990bfb7e83769fa5f1d6f065bc92')
version('1.36.0', '328bfec66c312150e4c2a78dcecb504b')
version('1.35.0', 'dce952a7214e72d6597516bcac84048b')
version('1.34.1', '2d938467e8a448a2c9763e0a9f8ca7e5')
version('1.34.0', 'ed5b9291ffad776f8757a916e1726ad0')
variant('debug', default=False, description='Switch to the debug version of Boost')
variant('python', default=False, description='Activate the component Boost.Python')
variant('mpi', default=False, description='Activate the component Boost.MPI')
variant('compression', default=True, description='Activate the compression Boost.iostreams')
depends_on('python', when='+python')
depends_on('mpi', when='+mpi')
depends_on('bzip2', when='+compression')
depends_on('zlib', when='+compression')
def url_for_version(self, version):
"""Handle Boost's weird URLs, which write the version two different ways."""
parts = [str(p) for p in Version(version)]
dots = ".".join(parts)
underscores = "_".join(parts)
return "http://downloads.sourceforge.net/project/boost/boost/%s/boost_%s.tar.bz2" % (
dots, underscores)
def determine_toolset(self, spec):
if spec.satisfies("=darwin-x86_64"):
return 'darwin'
toolsets = {'g++': 'gcc',
'icpc': 'intel',
'clang++': 'clang'}
for cc, toolset in toolsets.iteritems():
if cc in self.compiler.cxx_names:
return toolset
# fallback to gcc if no toolset found
return 'gcc'
def determine_bootstrap_options(self, spec, options):
options.append('--with-toolset=%s' % self.determine_toolset(spec))
without_libs = []
if '~mpi' in spec:
without_libs.append('mpi')
if '~python' in spec:
without_libs.append('python')
else:
options.append('--with-python=%s' %
join_path(spec['python'].prefix.bin, 'python'))
if without_libs:
options.append('--without-libraries=%s' % ','.join(without_libs))
with open('user-config.jam', 'w') as f:
if '+mpi' in spec:
f.write('using mpi : %s ;\n' %
join_path(spec['mpi'].prefix.bin, 'mpicxx'))
if '+python' in spec:
f.write('using python : %s : %s ;\n' %
(spec['python'].version,
join_path(spec['python'].prefix.bin, 'python')))
def determine_b2_options(self, spec, options):
if '+debug' in spec:
options.append('variant=debug')
else:
options.append('variant=release')
if '~compression' in spec:
options.extend([
'-s', 'NO_BZIP2=1',
'-s', 'NO_ZLIB=1'])
if '+compression' in spec:
options.extend([
'-s', 'BZIP2_INCLUDE=%s' % spec['bzip2'].prefix.include,
'-s', 'BZIP2_LIBPATH=%s' % spec['bzip2'].prefix.lib,
'-s', 'ZLIB_INCLUDE=%s' % spec['zlib'].prefix.include,
'-s', 'ZLIB_LIBPATH=%s' % spec['zlib'].prefix.lib,
])
options.extend([
'toolset=%s' % self.determine_toolset(spec),
'link=static,shared',
'threading=single,multi',
'--layout=tagged'])
def install(self, spec, prefix):
# to make Boost find the user-config.jam
env['BOOST_BUILD_PATH'] = './'
bootstrap = Executable('./bootstrap.sh')
bootstrap_options = ['--prefix=%s' % prefix]
self.determine_bootstrap_options(spec, bootstrap_options)
bootstrap(*bootstrap_options)
# b2 used to be called bjam, before 1.47 (sigh)
b2name = './b2' if spec.satisfies('@1.47:') else './bjam'
b2 = Executable(b2name)
b2_options = ['-j', '%s' % make_jobs]
self.determine_b2_options(spec, b2_options)
b2('install', *b2_options)

16
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@@ -0,0 +1,16 @@
--- Makefile 2015-02-26 10:50:00.000000000 -0800
+++ Makefile.new 2015-07-29 18:03:59.891357399 -0700
@@ -22,10 +22,10 @@
#
INC =
-GCC_PREFIX = $(shell dirname `which gcc`)
+GCC_PREFIX =
GCC_SUFFIX =
-CC = $(GCC_PREFIX)/gcc$(GCC_SUFFIX)
-CPP = $(GCC_PREFIX)/g++$(GCC_SUFFIX)
+CC = cc
+CPP = c++
CXX = $(CPP)
HEADERS = $(wildcard *.h)
BOWTIE_MM = 1

24
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@@ -0,0 +1,24 @@
from spack import *
from glob import glob
class Bowtie2(Package):
"""Description"""
homepage = "bowtie-bio.sourceforge.net/bowtie2/index.shtml"
version('2.2.5','51fa97a862d248d7ee660efc1147c75f', url = "http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.5/bowtie2-2.2.5-source.zip")
patch('bowtie2-2.5.patch',when='@2.2.5', level=0)
def install(self, spec, prefix):
make()
mkdirp(prefix.bin)
for bow in glob("bowtie2*"):
install(bow, prefix.bin)
# install('bowtie2',prefix.bin)
# install('bowtie2-align-l',prefix.bin)
# install('bowtie2-align-s',prefix.bin)
# install('bowtie2-build',prefix.bin)
# install('bowtie2-build-l',prefix.bin)
# install('bowtie2-build-s',prefix.bin)
# install('bowtie2-inspect',prefix.bin)
# install('bowtie2-inspect-l',prefix.bin)
# install('bowtie2-inspect-s',prefix.bin)

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@@ -0,0 +1,25 @@
from spack import *
class Boxlib(Package):
"""BoxLib, a software framework for massively parallel
block-structured adaptive mesh refinement (AMR) codes."""
homepage = "https://ccse.lbl.gov/BoxLib/"
url = "https://ccse.lbl.gov/pub/Downloads/BoxLib.git";
# TODO: figure out how best to version this. No tags in the repo!
version('master', git='https://ccse.lbl.gov/pub/Downloads/BoxLib.git')
depends_on('mpi')
def install(self, spec, prefix):
args = std_cmake_args
args += ['-DCCSE_ENABLE_MPI=1',
'-DCMAKE_C_COMPILER=%s' % which('mpicc'),
'-DCMAKE_CXX_COMPILER=%s' % which('mpicxx'),
'-DCMAKE_Fortran_COMPILER=%s' % which('mpif90')]
cmake('.', *args)
make()
make("install")

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@@ -0,0 +1,60 @@
from spack import *
class Bzip2(Package):
"""bzip2 is a freely available, patent free high-quality data
compressor. It typically compresses files to within 10% to 15%
of the best available techniques (the PPM family of statistical
compressors), whilst being around twice as fast at compression
and six times faster at decompression.
"""
homepage = "http://www.bzip.org"
url = "http://www.bzip.org/1.0.6/bzip2-1.0.6.tar.gz"
version('1.0.6', '00b516f4704d4a7cb50a1d97e6e8e15b')
def patch(self):
mf = FileFilter('Makefile-libbz2_so')
mf.filter(r'^CC=gcc', 'CC=cc')
# Below stuff patches the link line to use RPATHs on Mac OS X.
if 'darwin' in self.spec.architecture:
v = self.spec.version
v1, v2, v3 = (v.up_to(i) for i in (1,2,3))
mf.filter('$(CC) -shared -Wl,-soname -Wl,libbz2.so.{0} -o libbz2.so.{1} $(OBJS)'.format(v2, v3),
'$(CC) -dynamiclib -Wl,-install_name -Wl,@rpath/libbz2.{0}.dylib -current_version {1} -compatibility_version {2} -o libbz2.{3}.dylib $(OBJS)'.format(v1, v2, v3, v3), string=True)
mf.filter('$(CC) $(CFLAGS) -o bzip2-shared bzip2.c libbz2.so.{0}'.format(v3),
'$(CC) $(CFLAGS) -o bzip2-shared bzip2.c libbz2.{0}.dylib'.format(v3), string=True)
mf.filter('rm -f libbz2.so.{0}'.format(v2),
'rm -f libbz2.{0}.dylib'.format(v2), string=True)
mf.filter('ln -s libbz2.so.{0} libbz2.so.{1}'.format(v3, v2),
'ln -s libbz2.{0}.dylib libbz2.{1}.dylib'.format(v3, v2), string=True)
def install(self, spec, prefix):
make('-f', 'Makefile-libbz2_so')
make('clean')
make("install", "PREFIX=%s" % prefix)
install('bzip2-shared', join_path(prefix.bin, 'bzip2'))
v1, v2, v3 = (self.spec.version.up_to(i) for i in (1,2,3))
if 'darwin' in self.spec.architecture:
lib = 'libbz2.dylib'
lib1, lib2, lib3 = ('libbz2.{0}.dylib'.format(v) for v in (v1, v2, v3))
else:
lib = 'libbz2.so'
lib1, lib2, lib3 = ('libbz2.so.{0}'.format(v) for v in (v1, v2, v3))
install(lib3, join_path(prefix.lib, lib3))
with working_dir(prefix.lib):
for l in (lib, lib1, lib2):
symlink(lib3, l)
with working_dir(prefix.bin):
force_remove('bunzip2', 'bzcat')
symlink('bzip2', 'bunzip2')
symlink('bzip2', 'bzcat')

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@@ -0,0 +1,20 @@
from spack import *
class Cairo(Package):
"""Cairo is a 2D graphics library with support for multiple output devices."""
homepage = "http://cairographics.org"
url = "http://cairographics.org/releases/cairo-1.14.0.tar.xz"
version('1.14.0', 'fc3a5edeba703f906f2241b394f0cced')
depends_on("libpng")
depends_on("glib")
depends_on("pixman")
depends_on("fontconfig@2.10.91:") # Require newer version of fontconfig.
def install(self, spec, prefix):
configure("--prefix=%s" % prefix,
"--disable-trace", # can cause problems with libiberty
"--enable-tee")
make()
make("install")

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@@ -0,0 +1,47 @@
##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Callpath(Package):
"""Library for representing callpaths consistently in
distributed-memory performance tools."""
homepage = "https://github.com/llnl/callpath"
url = "https://github.com/llnl/callpath/archive/v1.0.1.tar.gz"
version('1.0.2', 'b1994d5ee7c7db9d27586fc2dcf8f373')
version('1.0.1', '0047983d2a52c5c335f8ba7f5bab2325')
depends_on("libelf")
depends_on("libdwarf")
depends_on("dyninst")
depends_on("adept-utils")
depends_on("mpi")
def install(self, spec, prefix):
# TODO: offer options for the walker used.
cmake('.', "-DCALLPATH_WALKER=dyninst", *std_cmake_args)
make()
make("install")

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@@ -0,0 +1,35 @@
from spack import *
import os
class Cblas(Package):
"""The BLAS (Basic Linear Algebra Subprograms) are routines that
provide standard building blocks for performing basic vector and
matrix operations."""
homepage = "http://www.netlib.org/blas/_cblas/"
# tarball has no version, but on the date below, this MD5 was correct.
version('2015-06-06', '1e8830f622d2112239a4a8a83b84209a',
url='http://www.netlib.org/blas/blast-forum/cblas.tgz')
depends_on('blas')
parallel = False
def patch(self):
mf = FileFilter('Makefile.in')
mf.filter('^BLLIB =.*', 'BLLIB = %s/libblas.a' % self.spec['blas'].prefix.lib)
mf.filter('^CC =.*', 'CC = cc')
mf.filter('^FC =.*', 'FC = f90')
def install(self, spec, prefix):
make('all')
mkdirp(prefix.lib)
mkdirp(prefix.include)
# Rename the generated lib file to libcblas.a
install('./lib/cblas_LINUX.a', '%s/libcblas.a' % prefix.lib)
install('./include/cblas.h','%s' % prefix.include)
install('./include/cblas_f77.h','%s' % prefix.include)

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@@ -0,0 +1,66 @@
################################################################################
# Copyright (c) 2015 Krell Institute. All Rights Reserved.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later
# version.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program; if not, write to the Free Software Foundation, Inc., 59 Temple
# Place, Suite 330, Boston, MA 02111-1307 USA
################################################################################
from spack import *
class CbtfArgonavis(Package):
"""CBTF Argo Navis project contains the CUDA collector and supporting
libraries that was done as a result of a DOE SBIR grant."""
homepage = "http://sourceforge.net/p/cbtf/wiki/Home/"
# Mirror access template example
#url = "file:/g/g24/jeg/cbtf-argonavis-1.5.tar.gz"
#version('1.5', '1f7f6512f55409ed2135cfceabe26b82')
version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf-argonavis/cbtf-argonavis')
depends_on("cmake@3.0.2:")
depends_on("papi")
depends_on("cbtf")
depends_on("cbtf-krell")
depends_on("cuda")
parallel = False
def install(self, spec, prefix):
# Look for package installation information in the cbtf and cbtf-krell prefixes
cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['cbtf-krell'].prefix)
# FIXME, hard coded for testing purposes, we will alter when the external package feature is available
cuda_prefix_path = "/usr/local/cudatoolkit-6.0"
cupti_prefix_path = "/usr/local/cudatoolkit-6.0/extras/CUPTI"
with working_dir('CUDA'):
with working_dir('build', create=True):
cmake('..',
'-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64,
'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
'-DCUDA_INSTALL_PATH=%s' % cuda_prefix_path,
'-DCUDA_ROOT=%s' % cuda_prefix_path,
'-DCUPTI_ROOT=%s' % cupti_prefix_path,
'-DCUDA_DIR=%s' % cuda_prefix_path,
'-DPAPI_ROOT=%s' % spec['papi'].prefix,
'-DCBTF_PREFIX=%s' % spec['cbtf'].prefix,
*std_cmake_args)
make("clean")
make()
make("install")

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################################################################################
# Copyright (c) 2015 Krell Institute. All Rights Reserved.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later
# version.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program; if not, write to the Free Software Foundation, Inc., 59 Temple
# Place, Suite 330, Boston, MA 02111-1307 USA
################################################################################
from spack import *
class CbtfKrell(Package):
"""CBTF Krell project contains the Krell Institute contributions to the CBTF project.
These contributions include many performance data collectors and support
libraries as well as some example tools that drive the data collection at
HPC levels of scale."""
homepage = "http://sourceforge.net/p/cbtf/wiki/Home/"
# optional mirror access template
#url = "file:/g/g24/jeg/cbtf-krell-1.5.tar.gz"
#version('1.5', 'b13f6df6a93c44149d977773dd776d2f')
version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf-krell/cbtf-krell')
# Dependencies for cbtf-krell
# For binutils service
depends_on("binutils@2.24+krellpatch")
# collectionTool
depends_on("boost@1.50.0")
depends_on("dyninst@8.2.1")
depends_on("mrnet@4.1.0:+lwthreads")
depends_on("xerces-c@3.1.1:")
depends_on("cbtf")
# for services and collectors
depends_on("libmonitor+krellpatch")
depends_on("libunwind")
depends_on("papi")
# MPI Installations
# These have not worked either for build or execution, commenting out for now
#depends_on("openmpi")
#depends_on("mvapich2@2.0")
#depends_on("mpich")
parallel = False
def install(self, spec, prefix):
# Add in paths for finding package config files that tell us where to find these packages
cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['dyninst'].prefix)
# FIXME - hard code path until external package support is available
# Need to change this path and/or add additional paths for MPI experiment support on different platforms
#openmpi_prefix_path = "/opt/openmpi-1.8.2"
#mvapich_prefix_path = "/usr/local/tools/mvapich-gnu"
# Other possibilities, they will need a -DMVAPICH_DIR=, etc clause in the cmake command to be recognized
# mvapich_prefix_path = "<mvapich install path>"
# mvapich2_prefix_path = "<mvapich2 install path>"
# mpich2_prefix_path = "<mpich2 install path>"
# mpich_prefix_path = "<mpich install path>"
# mpt_prefix_path = "<mpt install path>"
# Add in paths for cuda if requested via the cuda variant
# FIXME - hard code path until external package support is available
#if '+cuda' in spec:
# cuda_prefix_path = "/usr/local/cuda-6.0"
# cupti_prefix_path = "/usr/local/cuda-6.0/extras/CUPTI"
#else:
# cuda_prefix_path = ""
# cupti_prefix_path = ""
#'-DMVAPICH2_DIR=%s' % spec['mvapich2'].prefix,
#'-DOPENMPI_DIR=%s' % spec['openmpi'].prefix,
#'-DMPICH_DIR=%s' % spec['mpich'].prefix,
#'-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64,
#'-DOPENMPI_DIR=%s' % openmpi_prefix_path,
#'-DMVAPICH_DIR=%s' % mvapich_prefix_path,
#'-DLIB_SUFFIX=64',
#'-DCUDA_DIR=%s' % cuda_prefix_path,
#'-DCUPTI_DIR=%s' % cupti_prefix_path,
# Build cbtf-krell with cmake
with working_dir('build_cbtf_krell', create=True):
cmake('..',
'-DCMAKE_BUILD_TYPE=Debug',
'-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DCBTF_DIR=%s' % spec['cbtf'].prefix,
'-DBINUTILS_DIR=%s' % spec['binutils'].prefix,
'-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix,
'-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix,
'-DPAPI_DIR=%s' % spec['papi'].prefix,
'-DBOOST_DIR=%s' % spec['boost'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DDYNINST_DIR=%s' % spec['dyninst'].prefix,
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
*std_cmake_args)
make("clean")
make()
make("install")

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################################################################################
# Copyright (c) 2015 Krell Institute. All Rights Reserved.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later
# version.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program; if not, write to the Free Software Foundation, Inc., 59 Temple
# Place, Suite 330, Boston, MA 02111-1307 USA
################################################################################
from spack import *
class CbtfLanl(Package):
"""CBTF LANL project contains a memory tool and data center type system command monitoring tool."""
homepage = "http://sourceforge.net/p/cbtf/wiki/Home/"
# Mirror access template example
#url = "file:/g/g24/jeg/cbtf-lanl-1.5.tar.gz"
#version('1.5', 'c3f78f967b0a42c6734ce4be0e602426')
version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf-lanl/cbtf-lanl')
# Dependencies for cbtf-krell
depends_on("boost@1.50")
depends_on("mrnet@4.1.0:+lwthreads")
depends_on("xerces-c@3.1.1:")
depends_on("cbtf")
depends_on("cbtf-krell")
parallel = False
def install(self, spec, prefix):
# Add in paths for finding package config files that tell us where to find these packages
cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['cbtf-krell'].prefix)
with working_dir('build', create=True):
cmake('..',
'-DCBTF_DIR=%s' % spec['cbtf'].prefix,
'-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
'-DCMAKE_MODULE_PATH=%s' % join_path(prefix.share,'KrellInstitute','cmake'),
*std_cmake_args)
make("clean")
make()
make("install")

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################################################################################
# Copyright (c) 2015 Krell Institute. All Rights Reserved.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later
# version.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program; if not, write to the Free Software Foundation, Inc., 59 Temple
# Place, Suite 330, Boston, MA 02111-1307 USA
################################################################################
from spack import *
class Cbtf(Package):
"""CBTF project contains the base code for CBTF that supports creating components,
component networks and the support to connect these components and component
networks into sequential and distributed network tools."""
homepage = "http://sourceforge.net/p/cbtf/wiki/Home"
# Mirror access template example
#url = "file:/g/g24/jeg/cbtf-1.5.tar.gz"
#version('1.6', '1ca88a8834759c4c74452cb97fe7b70a')
# Use when the git repository is available
version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf/cbtf')
depends_on("cmake")
#depends_on("boost@1.42.0:")
depends_on("boost@1.50.0")
depends_on("mrnet@4.1.0+lwthreads")
depends_on("xerces-c@3.1.1:")
depends_on("libxml2")
parallel = False
def install(self, spec, prefix):
with working_dir('build', create=True):
# Boost_NO_SYSTEM_PATHS Set to TRUE to suppress searching
# in system paths (or other locations outside of BOOST_ROOT
# or BOOST_INCLUDEDIR). Useful when specifying BOOST_ROOT.
# Defaults to OFF.
cmake('..',
'--debug-output',
'-DBoost_NO_SYSTEM_PATHS=TRUE',
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
'-DBOOST_ROOT=%s' % spec['boost'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DCMAKE_MODULE_PATH=%s' % join_path(prefix.share,'KrellInstitute','cmake'),
*std_cmake_args)
make("clean")
make()
make("install")

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--- old/sandbox/CMakeLists.txt
+++ new/sandbox/CMakeLists.txt
@@ -4,9 +4,11 @@
add_executable(sandbox_json sandbox_json.cpp)
add_executable(sandbox_rtti sandbox_rtti.cpp)
+if(Boost_FOUND)
add_executable(sandbox_vs sandbox_vs.cpp)
target_link_libraries(sandbox_vs sandbox_vs_dll)
include_directories(sandbox_shared_lib)
+endif(Boost_FOUND)
if(Boost_FOUND)
add_executable(performance performance.cpp)
--- old/include/cereal/types/common.hpp
+++ new/include/cereal/types/common.hpp
@@ -106,14 +106,16 @@
t = reinterpret_cast<typename common_detail::is_enum<T>::type const &>( value );
}
+#ifndef CEREAL_ENABLE_RAW_POINTER_SERIALIZATION
//! Serialization for raw pointers
/*! This exists only to throw a static_assert to let users know we don't support raw pointers. */
template <class Archive, class T> inline
void CEREAL_SERIALIZE_FUNCTION_NAME( Archive &, T * & )
{
static_assert(cereal::traits::detail::delay_static_assert<T>::value,
"Cereal does not support serializing raw pointers - please use a smart pointer");
}
+#endif
//! Serialization for C style arrays
template <class Archive, class T> inline

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from spack import *
import shutil
class Cereal(Package):
"""cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone."""
homepage = "http://uscilab.github.io/cereal/"
url = "https://github.com/USCiLab/cereal/archive/v1.1.2.tar.gz"
version('1.1.2', '34d4ad174acbff005c36d4d10e48cbb9')
version('1.1.1', '0ceff308c38f37d5b5f6df3927451c27')
version('1.1.0', '9f2d5f72e935c54f4c6d23e954ce699f')
version('1.0.0', 'd1bacca70a95cec0ddbff68b0871296b')
version('0.9.1', '8872d4444ff274ce6cd1ed364d0fc0ad')
patch("Werror.patch")
depends_on("cmake @2.6.2:")
def install(self, spec, prefix):
# Don't use -Werror
filter_file(r'-Werror', '', 'CMakeLists.txt')
# configure
# Boost is only used for self-tests, which we are not running (yet?)
cmake('.', '-DCMAKE_DISABLE_FIND_PACKAGE_Boost=TRUE', *std_cmake_args)
# Build
make()
# Install
shutil.rmtree(join_path(prefix, 'doc'), ignore_errors=True)
shutil.rmtree(join_path(prefix, 'include'), ignore_errors=True)
shutil.copytree('doc', join_path(prefix, 'doc'), symlinks=True)
shutil.copytree('include', join_path(prefix, 'include'), symlinks=True)

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from spack import *
class Cfitsio(Package):
"""
CFITSIO is a library of C and Fortran subroutines for reading and writing
data files in FITS (Flexible Image Transport System) data format.
"""
homepage = 'http://heasarc.gsfc.nasa.gov/fitsio/'
version('3.370', 'abebd2d02ba5b0503c633581e3bfa116')
def url_for_version(self, v):
url = 'ftp://heasarc.gsfc.nasa.gov/software/fitsio/c/cfitsio{0}.tar.gz'
return url.format(str(v).replace('.', ''))
def install(self, spec, prefix):
configure('--prefix=' + prefix)
make()
make('install')

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Cgal(Package):
"""
CGAL is a software project that provides easy access to efficient and reliable geometric algorithms in the form of
a C++ library. CGAL is used in various areas needing geometric computation, such as geographic information systems,
computer aided design, molecular biology, medical imaging, computer graphics, and robotics.
"""
homepage = 'http://www.cgal.org/'
url = 'https://github.com/CGAL/cgal/archive/releases/CGAL-4.7.tar.gz'
version('4.7', '4826714810f3b4c65cac96b90fb03b67')
version('4.6.3', 'e8ee2ecc8d2b09b94a121c09257b576d')
# Installation instructions : http://doc.cgal.org/latest/Manual/installation.html
variant('shared', default=True, description='Enables the build of shared libraries')
variant('debug', default=False, description='Builds a debug version of the libraries')
depends_on('boost')
depends_on('mpfr')
depends_on('gmp')
depends_on('zlib')
# FIXME : Qt5 dependency missing (needs Qt5 and OpenGL)
# FIXME : Optional third party libraries missing
def install(self, spec, prefix):
options = []
options.extend(std_cmake_args)
# CGAL supports only Release and Debug build type. Any other build type will raise an error at configure time
if '+debug' in spec:
options.append('-DCMAKE_BUILD_TYPE:STRING=Debug')
else:
options.append('-DCMAKE_BUILD_TYPE:STRING=Release')
if '+shared' in spec:
options.append('-DBUILD_SHARED_LIBS:BOOL=ON')
else:
options.append('-DBUILD_SHARED_LIBS:BOOL=OFF')
build_directory = join_path(self.stage.path, 'spack-build')
source_directory = self.stage.source_path
with working_dir(build_directory, create=True):
cmake(source_directory, *options)
make()
make("install")

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from spack import *
class Cgm(Package):
"""The Common Geometry Module, Argonne (CGMA) is a code library
which provides geometry functionality used for mesh generation and
other applications."""
homepage = "http://trac.mcs.anl.gov/projects/ITAPS/wiki/CGM"
url = "http://ftp.mcs.anl.gov/pub/fathom/cgm13.1.1.tar.gz"
version('13.1.1', '4e8dbc4ba8f65767b29f985f7a23b01f')
version('13.1.0', 'a6c7b22660f164ce893fb974f9cb2028')
version('13.1' , '95f724bda04919fc76818a5b7bc0b4ed')
depends_on("mpi")
def patch(self):
filter_file('^(#include "CGMParallelConventions.h")',
'//\1',
'geom/parallel/CGMReadParallel.cpp')
def install(self, spec, prefix):
configure("--with-mpi",
"--prefix=%s" % prefix,
"CFLAGS=-static",
"CXXFLAGS=-static",
"FCFLAGS=-static")
make()
make("install")

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from spack import *
from spack.util.environment import *
class Cityhash(Package):
homepage = "https://github.com/google/cityhash"
url = "https://github.com/google/cityhash"
version('2013-07-31', git='https://github.com/google/cityhash.git', commit='8af9b8c2b889d80c22d6bc26ba0df1afb79a30db')
version('master', branch='master', git='https://github.com/google/cityhash.git')
def install(self, spec, prefix):
configure('--enable-sse4.2', '--prefix=%s' % prefix)
make()
make("install")

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from spack import *
class Cleverleaf(Package):
"""
CleverLeaf is a hydrodynamics mini-app that extends CloverLeaf with Adaptive
Mesh Refinement using the SAMRAI toolkit from Lawrence Livermore National
Laboratory. The primary goal of CleverLeaf is to evaluate the application of
AMR to the Lagrangian-Eulerian hydrodynamics scheme used by CloverLeaf.
"""
homepage = "http://uk-mac.github.io/CleverLeaf/"
url = "https://github.com/UK-MAC/CleverLeaf/tarball/master"
version('develop', git='https://github.com/UK-MAC/CleverLeaf_ref.git', branch='develop')
depends_on("SAMRAI@3.8.0:")
depends_on("hdf5+mpi")
depends_on("boost")
def install(self, spec, prefix):
cmake(*std_cmake_args)
make()
make("install")

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from spack import *
class Cloog(Package):
"""CLooG is a free software and library to generate code for
scanning Z-polyhedra. That is, it finds a code (e.g. in C,
FORTRAN...) that reaches each integral point of one or more
parameterized polyhedra."""
homepage = "http://www.cloog.org"
url = "http://www.bastoul.net/cloog/pages/download/count.php3?url=./cloog-0.18.1.tar.gz"
list_url = "http://www.bastoul.net/cloog/pages/download"
version('0.18.1', 'e34fca0540d840e5d0f6427e98c92252')
version('0.18.0', 'be78a47bd82523250eb3e91646db5b3d')
version('0.17.0', '0aa3302c81f65ca62c114e5264f8a802')
depends_on("gmp")
depends_on("isl")
def install(self, spec, prefix):
configure("--prefix=%s" % prefix,
"--with-osl=no",
"--with-isl=%s" % spec['isl'].prefix,
"--with-gmp=%s" % spec['gmp'].prefix)
make()
make("install")

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Cmake(Package):
"""A cross-platform, open-source build system. CMake is a family of
tools designed to build, test and package software."""
homepage = 'https://www.cmake.org'
version('2.8.10.2', '097278785da7182ec0aea8769d06860c',
url = 'http://www.cmake.org/files/v2.8/cmake-2.8.10.2.tar.gz')
version('3.0.2', 'db4c687a31444a929d2fdc36c4dfb95f',
url = 'http://www.cmake.org/files/v3.0/cmake-3.0.2.tar.gz')
version('3.4.0', 'cd3034e0a44256a0917e254167217fc8',
url = 'http://cmake.org/files/v3.4/cmake-3.4.0.tar.gz')
variant('ncurses', default=True, description='Enables the build of the ncurses gui')
depends_on('ncurses', when='+ncurses')
def install(self, spec, prefix):
configure('--prefix=' + prefix,
'--parallel=' + str(make_jobs),
'--', '-DCMAKE_USE_OPENSSL=ON')
make()
make('install')

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from spack import *
class Coreutils(Package):
"""The GNU Core Utilities are the basic file, shell and text
manipulation utilities of the GNU operating system. These are
the core utilities which are expected to exist on every
operating system.
"""
homepage = "http://www.gnu.org/software/coreutils/"
url = "http://ftp.gnu.org/gnu/coreutils/coreutils-8.23.tar.xz"
version('8.23', 'abed135279f87ad6762ce57ff6d89c41')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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from spack import *
class Cppcheck(Package):
"""A tool for static C/C++ code analysis."""
homepage = "http://cppcheck.sourceforge.net/"
url = "http://downloads.sourceforge.net/project/cppcheck/cppcheck/1.68/cppcheck-1.68.tar.bz2"
version('1.68', 'c015195f5d61a542f350269030150708')
def install(self, spec, prefix):
# cppcheck does not have a configure script
make()
# manually install the final cppcheck binary
mkdirp(prefix.bin)
install('cppcheck', prefix.bin)

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from spack import *
class Cram(Package):
"""Cram runs many small MPI jobs inside one large MPI job."""
homepage = "https://github.com/llnl/cram"
url = "http://github.com/llnl/cram/archive/v1.0.1.tar.gz"
version('1.0.1', 'c73711e945cf5dc603e44395f6647f5e')
extends('python')
depends_on("mpi")
def install(self, spec, prefix):
cmake(".", *std_cmake_args)
make()
make("install")

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from spack import *
class Cscope(Package):
"""Cscope is a developer's tool for browsing source code."""
homepage = "http://http://cscope.sourceforge.net/"
url = "http://downloads.sourceforge.net/project/cscope/cscope/15.8b/cscope-15.8b.tar.gz"
version('15.8b', '8f9409a238ee313a96f9f87fe0f3b176')
# Can be configured to use flex (not necessary)
# ./configure --with-flex
def install(self, spec, prefix):
configure('--prefix=%s' % prefix)
make()
make("install")

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Cube(Package):
"""
Cube the profile viewer for Score-P and Scalasca profiles. It displays a multi-dimensional performance space
consisting of the dimensions:
- performance metric
- call path
- system resource
"""
homepage = "http://www.scalasca.org/software/cube-4.x/download.html"
url = "http://apps.fz-juelich.de/scalasca/releases/cube/4.2/dist/cube-4.2.3.tar.gz"
version('4.3.3', '07e109248ed8ffc7bdcce614264a2909',
url='http://apps.fz-juelich.de/scalasca/releases/cube/4.3/dist/cube-4.3.3.tar.gz')
version('4.2.3', '8f95b9531f5a8f8134f279c2767c9b20',
url="http://apps.fz-juelich.de/scalasca/releases/cube/4.2/dist/cube-4.2.3.tar.gz")
# TODO : add variant that builds GUI on top of Qt
def install(self, spec, prefix):
configure_args = ["--prefix=%s" % prefix,
"--without-paraver",
"--without-gui"]
configure(*configure_args)
make(parallel=False)
make("install", parallel=False)

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from spack import *
class Curl(Package):
"""cURL is an open source command line tool and library for
transferring data with URL syntax"""
homepage = "http://curl.haxx.se"
url = "http://curl.haxx.se/download/curl-7.46.0.tar.bz2"
version('7.46.0', '9979f989a2a9930d10f1b3deeabc2148')
version('7.45.0', '62c1a352b28558f25ba6209214beadc8')
version('7.44.0', '6b952ca00e5473b16a11f05f06aa8dae')
version('7.43.0', '11bddbb452a8b766b932f859aaeeed39')
version('7.42.1', '296945012ce647b94083ed427c1877a8')
depends_on("openssl")
depends_on("zlib")
def install(self, spec, prefix):
configure('--prefix=%s' % prefix,
'--with-zlib=%s' % spec['zlib'].prefix,
'--with-ssl=%s' % spec['openssl'].prefix)
make()
make("install")

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from spack import *
import os
class Czmq(Package):
""" A C interface to the ZMQ library """
homepage = "http://czmq.zeromq.org"
url = "https://github.com/zeromq/czmq/archive/v3.0.2.tar.gz"
version('3.0.2', '23e9885f7ee3ce88d99d0425f52e9be1', url='https://github.com/zeromq/czmq/archive/v3.0.2.tar.gz')
depends_on('libtool')
depends_on('automake')
depends_on('autoconf')
depends_on('pkg-config')
depends_on('zeromq')
def install(self, spec, prefix):
bash = which("bash")
# Work around autogen.sh oddities
# bash("./autogen.sh")
mkdirp("config")
autoreconf = which("autoreconf")
autoreconf("--install", "--verbose", "--force",
"-I", "config",
"-I", os.path.join(spec['pkg-config'].prefix, "share", "aclocal"),
"-I", os.path.join(spec['automake'].prefix, "share", "aclocal"),
"-I", os.path.join(spec['libtool'].prefix, "share", "aclocal"),
)
configure("--prefix=%s" % prefix)
make()
make("install")

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from spack import *
class Damselfly(Package):
"""Damselfly is a model-based parallel network simulator."""
homepage = "https://github.com/llnl/damselfly"
url = "https://github.com/llnl/damselfly"
version('1.0', '05cf7e2d8ece4408c0f2abb7ab63fd74c0d62895', git='https://github.com/llnl/damselfly.git', tag='v1.0')
def install(self, spec, prefix):
with working_dir('spack-build', create=True):
cmake('-DCMAKE_BUILD_TYPE=release', '..', *std_cmake_args)
make()
make('install')

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from spack import *
class Dbus(Package):
"""D-Bus is a message bus system, a simple way for applications to
talk to one another. D-Bus supplies both a system daemon (for
events such new hardware device printer queue ) and a
per-user-login-session daemon (for general IPC needs among user
applications). Also, the message bus is built on top of a
general one-to-one message passing framework, which can be used
by any two applications to communicate directly (without going
through the message bus daemon)."""
homepage = "http://dbus.freedesktop.org/"
url = "http://dbus.freedesktop.org/releases/dbus/dbus-1.8.8.tar.gz"
version('1.9.0', 'ec6895a4d5c0637b01f0d0e7689e2b36')
version('1.8.8', 'b9f4a18ee3faa1e07c04aa1d83239c43')
version('1.8.6', '6a08ba555d340e9dfe2d623b83c0eea8')
version('1.8.4', '4717cb8ab5b80978fcadf2b4f2f72e1b')
version('1.8.2', 'd6f709bbec0a022a1847c7caec9d6068')
def install(self, spec, prefix):
configure(
"--prefix=%s" % prefix,
"--disable-systemd",
"--disable-launchd")
make()
make("install")
# dbus needs a machine id generated after install
dbus_uuidgen = Executable(join_path(prefix.bin, 'dbus-uuidgen'))
dbus_uuidgen('--ensure')

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import os
import glob
from spack import *
class DocbookXml(Package):
"""Docbook DTD XML files."""
homepage = "http://www.oasis-open.org/docbook"
url = "http://www.oasis-open.org/docbook/xml/4.5/docbook-xml-4.5.zip"
version('4.5', '03083e288e87a7e829e437358da7ef9e')
def install(self, spec, prefix):
cp = which('cp')
install_args = ['-a', '-t', prefix]
install_args.extend(glob.glob('*'))
cp(*install_args)

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#------------------------------------------------------------------------------
# Author: Justin Too <justin@doubleotoo.com>
# Date: September 11, 2015
#------------------------------------------------------------------------------
from spack import *
class Doxygen(Package):
"""Doxygen is the de facto standard tool for generating documentation
from annotated C++ sources, but it also supports other popular programming
languages such as C, Objective-C, C#, PHP, Java, Python, IDL (Corba,
Microsoft, and UNO/OpenOffice flavors), Fortran, VHDL, Tcl, and to some extent D..
"""
homepage = "http://www.stack.nl/~dimitri/doxygen/"
url = "http://ftp.stack.nl/pub/users/dimitri/doxygen-1.8.10.src.tar.gz"
version('1.8.10', '79767ccd986f12a0f949015efb5f058f')
depends_on("cmake@2.8.12:")
def install(self, spec, prefix):
cmake('.', *std_cmake_args)
make()
make("install")

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from spack import *
class Dri2proto(Package):
"""DRI2 Protocol Headers."""
homepage = "http://http://cgit.freedesktop.org/xorg/proto/dri2proto/"
url = "http://xorg.freedesktop.org/releases/individual/proto/dri2proto-2.8.tar.gz"
version('2.8', '19ea18f63d8ae8053c9fa84b60365b77')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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import os
from spack import *
class Dtcmp(Package):
"""The Datatype Comparison Library provides comparison operations and
parallel sort algorithms for MPI applications."""
homepage = "https://github.com/hpc/dtcmp"
url = "https://github.com/hpc/dtcmp/releases/download/v1.0.3/dtcmp-1.0.3.tar.gz"
version('1.0.3', 'cdd8ccf71e8ff67de2558594a7fcd317')
depends_on('mpi')
depends_on('lwgrp')
def install(self, spec, prefix):
configure("--prefix=" + prefix,
"--with-lwgrp=" + spec['lwgrp'].prefix)
make()
make("install")

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Dyninst(Package):
"""API for dynamic binary instrumentation. Modify programs while they
are executing without recompiling, re-linking, or re-executing."""
homepage = "https://paradyn.org"
url = "http://www.dyninst.org/sites/default/files/downloads/dyninst/8.1.2/DyninstAPI-8.1.2.tgz"
list_url = "http://www.dyninst.org/downloads/dyninst-8.x"
version('8.2.1', 'abf60b7faabe7a2e4b54395757be39c7',
url="http://www.paradyn.org/release8.2/DyninstAPI-8.2.1.tgz")
version('8.1.2', 'bf03b33375afa66fe0efa46ce3f4b17a',
url="http://www.paradyn.org/release8.1.2/DyninstAPI-8.1.2.tgz")
version('8.1.1', 'd1a04e995b7aa70960cd1d1fac8bd6ac',
url="http://www.paradyn.org/release8.1/DyninstAPI-8.1.1.tgz")
depends_on("libelf")
depends_on("libdwarf")
depends_on("boost@1.42:")
# new version uses cmake
def install(self, spec, prefix):
libelf = spec['libelf'].prefix
libdwarf = spec['libdwarf'].prefix
with working_dir('spack-build', create=True):
cmake('..',
'-DBoost_INCLUDE_DIR=%s' % spec['boost'].prefix.include,
'-DBoost_LIBRARY_DIR=%s' % spec['boost'].prefix.lib,
'-DBoost_NO_SYSTEM_PATHS=TRUE',
'-DLIBELF_INCLUDE_DIR=%s' % join_path(libelf.include, 'libelf'),
'-DLIBELF_LIBRARIES=%s' % join_path(libelf.lib, 'libelf.so'),
'-DLIBDWARF_INCLUDE_DIR=%s' % libdwarf.include,
'-DLIBDWARF_LIBRARIES=%s' % join_path(libdwarf.lib, 'libdwarf.so'),
*std_cmake_args)
make()
make("install")
@when('@:8.1')
def install(self, spec, prefix):
configure("--prefix=" + prefix)
make()
make("install")

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from spack import *
class Elfutils(Package):
"""elfutils is a collection of various binary tools such as
eu-objdump, eu-readelf, and other utilities that allow you to
inspect and manipulate ELF files. Refer to Table 5.Tools Included
in elfutils for Red Hat Developer for a complete list of binary
tools that are distributed with the Red Hat Developer Toolset
version of elfutils."""
homepage = "https://fedorahosted.org/elfutils/"
version('0.163',
git='git://git.fedorahosted.org/git/elfutils.git',
tag='elfutils-0.163')
provides('elf')
def install(self, spec, prefix):
autoreconf = which('autoreconf')
autoreconf('-if')
configure('--prefix=%s' % prefix, '--enable-maintainer-mode')
make()
make("install")

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from spack import *
class Expat(Package):
"""<eXpat/> is an XML parser library written in C"""
homepage = "http://expat.sourceforge.net/"
url = "http://downloads.sourceforge.net/project/expat/expat/2.1.0/expat-2.1.0.tar.gz"
version('2.1.0', 'dd7dab7a5fea97d2a6a43f511449b7cd')
def install(self, spec, prefix):
with working_dir('spack-build', create=True):
cmake('..', *std_cmake_args)
make()
make('install')

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from spack import *
# typical working line with extrae 3.0.1
# ./configure --prefix=/usr/local --with-mpi=/usr/lib64/mpi/gcc/openmpi --with-unwind=/usr/local --with-papi=/usr --with-dwarf=/usr --with-elf=/usr --with-dyninst=/usr --with-binutils=/usr --with-xml-prefix=/usr --enable-openmp --enable-nanos --enable-pthread --disable-parallel-merge LDFLAGS=-pthread
class Extrae(Package):
"""Extrae is the package devoted to generate tracefiles which can
be analyzed later by Paraver. Extrae is a tool that uses
different interposition mechanisms to inject probes into the
target application so as to gather information regarding the
application performance. The Extrae instrumentation package can
instrument the MPI programin model, and the following parallel
programming models either alone or in conjunction with MPI :
OpenMP, CUDA, OpenCL, pthread, OmpSs"""
homepage = "http://www.bsc.es/computer-sciences/extrae"
url = "http://www.bsc.es/ssl/apps/performanceTools/files/extrae-3.0.1.tar.bz2"
version('3.0.1', 'a6a8ca96cd877723cd8cc5df6bdb922b')
depends_on("mpi")
depends_on("dyninst")
depends_on("libunwind")
depends_on("boost")
depends_on("libdwarf")
depends_on("papi")
def install(self, spec, prefix):
if 'openmpi' in spec:
mpi = spec['openmpi']
elif 'mpich' in spec:
mpi = spec['mpich']
elif 'mvapich2' in spec:
mpi = spec['mvapich2']
configure("--prefix=%s" % prefix,
"--with-mpi=%s" % mpi.prefix,
"--with-unwind=%s" % spec['libunwind'].prefix,
"--with-dyninst=%s" % spec['dyninst'].prefix,
"--with-boost=%s" % spec['boost'].prefix,
"--with-dwarf=%s" % spec['libdwarf'].prefix,
"--with-papi=%s" % spec['papi'].prefix,
"--with-dyninst-headers=%s" % spec['dyninst'].prefix.include,
"--with-dyninst-libs=%s" % spec['dyninst'].prefix.lib)
make()
make("install", parallel=False)

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from spack import *
class ExuberantCtags(Package):
"""The canonical ctags generator"""
homepage = "ctags.sourceforge.net"
url = "http://downloads.sourceforge.net/project/ctags/ctags/5.8/ctags-5.8.tar.gz"
version('5.8', 'c00f82ecdcc357434731913e5b48630d')
def install(self, spec, prefix):
configure('--prefix=%s' % prefix)
make()
make("install")

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Fftw(Package):
"""
FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of
arbitrary input size, and of both real and complex data (as well as of even/odd data, i.e. the discrete cosine/sine
transforms or DCT/DST). We believe that FFTW, which is free software, should become the FFT library of choice for
most applications.
"""
homepage = "http://www.fftw.org"
url = "http://www.fftw.org/fftw-3.3.4.tar.gz"
version('3.3.4', '2edab8c06b24feeb3b82bbb3ebf3e7b3')
variant('float', default=True, description='Produces a single precision version of the library')
variant('long_double', default=True, description='Produces a long double precision version of the library')
variant('quad', default=False, description='Produces a quad precision version of the library (works only with GCC and libquadmath)')
variant('mpi', default=False, description='Activate MPI support')
depends_on('mpi', when='+mpi')
def install(self, spec, prefix):
options = ['--prefix=%s' % prefix,
'--enable-shared',
'--enable-threads',
'--enable-openmp']
if not self.compiler.f77 or not self.compiler.fc:
options.append("--disable-fortran")
if '+mpi' in spec:
options.append('--enable-mpi')
configure(*options)
make()
make("install")
if '+float' in spec:
configure('--enable-float', *options)
make()
make("install")
if '+long_double' in spec:
configure('--enable-long-double', *options)
make()
make("install")
if '+quad' in spec:
configure('--enable-quad-precision', *options)
make()
make("install")

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from spack import *
class Fish(Package):
"""fish is a smart and user-friendly command line shell for OS X, Linux, and
the rest of the family.
"""
homepage = "http://fishshell.com/"
url = "http://fishshell.com/files/2.2.0/fish-2.2.0.tar.gz"
list_url = homepage
version('2.2.0', 'a76339fd14ce2ec229283c53e805faac48c3e99d9e3ede9d82c0554acfc7b77a')
def install(self, spec, prefix):
configure('--prefix=%s' % prefix)
make()
make("install")

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from spack import *
class Flex(Package):
"""Flex is a tool for generating scanners."""
homepage = "http://flex.sourceforge.net/"
url = "http://download.sourceforge.net/flex/flex-2.5.39.tar.gz"
version('2.5.39', 'e133e9ead8ec0a58d81166b461244fde')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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Index: FL/x.H
===================================================================
--- a/FL/x.H (revision 10476)
+++ b/FL/x.H (working copy)
@@ -132,6 +132,7 @@
XFontStruct *ptr;
};
extern FL_EXPORT Fl_XFont_On_Demand fl_xfont;
+extern FL_EXPORT XFontStruct* fl_core_font();
// this object contains all X-specific stuff about a window:
// Warning: this object is highly subject to change!
Index: src/fl_font.cxx
===================================================================
--- a/src/fl_font.cxx (revision 10476)
+++ b/src/fl_font.cxx (working copy)
@@ -55,6 +55,14 @@
# include "fl_font_x.cxx"
#endif // WIN32
+#ifdef WIN32
+#elif defined(__APPLE__)
+#else
+XFontStruct *fl_core_font()
+{
+ return fl_xfont.value();
+}
+#endif
double fl_width(const char* c) {
if (c) return fl_width(c, (int) strlen(c));
Index: src/gl_draw.cxx
===================================================================
--- a/src/gl_draw.cxx (revision 10476)
+++ b/src/gl_draw.cxx (working copy)
@@ -84,7 +84,7 @@
* then sorting through them at draw time (for normal X rendering) to find which one can
* render the current glyph... But for now, just use the first font in the list for GL...
*/
- XFontStruct *font = fl_xfont;
+ XFontStruct *font = fl_core_font();
int base = font->min_char_or_byte2;
int count = font->max_char_or_byte2-base+1;
fl_fontsize->listbase = glGenLists(256);

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##############################################################################
# Copyright (c) 2013-2015, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Fltk(Package):
"""
FLTK (pronounced "fulltick") is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and
MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its
built-in GLUT emulation.
FLTK is designed to be small and modular enough to be statically linked, but works fine as a shared library. FLTK
also includes an excellent UI builder called FLUID that can be used to create applications in minutes.
"""
homepage = 'http://www.fltk.org/'
url = 'http://fltk.org/pub/fltk/1.3.3/fltk-1.3.3-source.tar.gz'
version('1.3.3', '9ccdb0d19dc104b87179bd9fd10822e3')
patch('font.patch', when='@1.3.3')
variant('shared', default=True, description='Enables the build of shared libraries')
def install(self, spec, prefix):
options = ['--prefix=%s' % prefix,
'--enable-localjpeg',
'--enable-localpng',
'--enable-localzlib']
if '+shared' in spec:
options.append('--enable-shared')
# FLTK needs to be built in-source
configure(*options)
make()
make('install')

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from spack import *
import os
class Flux(Package):
""" A next-generation resource manager (pre-alpha) """
homepage = "https://github.com/flux-framework/flux-core"
url = "https://github.com/flux-framework/flux-core"
version('master', branch='master', git='https://github.com/flux-framework/flux-core')
# Also needs autotools, but should use the system version if available
depends_on("zeromq@4.0.4:")
depends_on("czmq@2.2:")
depends_on("hwloc")
depends_on("lua@5.1:5.1.99")
depends_on("munge")
depends_on("libjson-c")
depends_on("libxslt")
depends_on("python")
depends_on("py-cffi")
# TODO: This provides a catalog, hacked with environment below for now
depends_on("docbook-xml")
depends_on("asciidoc")
def install(self, spec, prefix):
# Bootstrap with autotools
bash = which('bash')
bash('./autogen.sh')
bash('./autogen.sh') #yes, twice, intentionally
# Fix asciidoc dependency on xml style sheets and whatnot
os.environ['XML_CATALOG_FILES'] = os.path.join(spec['docbook-xml'].prefix,
'catalog.xml')
# Configure, compile & install
configure("--prefix=" + prefix)
make("install", "V=1")

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from spack import *
class Fontconfig(Package):
"""Fontconfig customizing font access"""
homepage = "http://www.freedesktop.org/wiki/Software/fontconfig/"
url = "http://www.freedesktop.org/software/fontconfig/release/fontconfig-2.11.1.tar.gz"
version('2.11.1' , 'e75e303b4f7756c2b16203a57ac87eba')
depends_on('freetype')
depends_on('libxml2')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix, "--enable-libxml2")
make()
make("install")

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from spack import *
class Freetype(Package):
"""Font package"""
homepage = "http://http://www.freetype.org"
url = "http://download.savannah.gnu.org/releases/freetype/freetype-2.5.3.tar.gz"
version('2.5.3' , 'cafe9f210e45360279c730d27bf071e9')
depends_on('libpng')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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from spack import *
class Gasnet(Package):
"""GASNet is a language-independent, low-level networking layer
that provides network-independent, high-performance communication
primitives tailored for implementing parallel global address space
SPMD languages and libraries such as UPC, Co-Array Fortran, SHMEM,
Cray Chapel, and Titanium.
"""
homepage = "http://gasnet.lbl.gov"
url = "http://gasnet.lbl.gov/GASNet-1.24.0.tar.gz"
version('1.24.0', 'c8afdf48381e8b5a7340bdb32ca0f41a')
def install(self, spec, prefix):
# TODO: don't use paths with @ in them.
change_sed_delimiter('@', ';', 'configure')
configure("--prefix=%s" % prefix,
# TODO: factor IB suport out into architecture description.
"--enable-ibv",
"--enable-udp",
"--disable-mpi",
"--enable-par",
"--enable-mpi-compat",
"--enable-segment-fast",
"--disable-aligned-segments",
# TODO: make an option so that Legion can request builds with/without this.
# See the Legion webpage for details on when to/not to use.
"--disable-pshm",
"--with-segment-mmap-max=64MB")
make()
make("install")

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
from contextlib import closing
from glob import glob
class Gcc(Package):
"""The GNU Compiler Collection includes front ends for C, C++,
Objective-C, Fortran, and Java."""
homepage = "https://gcc.gnu.org"
url = "http://open-source-box.org/gcc/gcc-4.9.2/gcc-4.9.2.tar.bz2"
list_url = 'http://open-source-box.org/gcc/'
list_depth = 2
DEPENDS_ON_ISL_PREDICATE = '@5.0:'
version('5.3.0', 'c9616fd448f980259c31de613e575719')
version('5.2.0', 'a51bcfeb3da7dd4c623e27207ed43467')
version('4.9.3', '6f831b4d251872736e8e9cc09746f327')
version('4.9.2', '4df8ee253b7f3863ad0b86359cd39c43')
version('4.9.1', 'fddf71348546af523353bd43d34919c1')
version('4.8.5', '80d2c2982a3392bb0b89673ff136e223')
version('4.8.4', '5a84a30839b2aca22a2d723de2a626ec')
version('4.7.4', '4c696da46297de6ae77a82797d2abe28')
version('4.6.4', 'b407a3d1480c11667f293bfb1f17d1a4')
version('4.5.4', '27e459c2566b8209ab064570e1b378f7')
variant('gold', default=True, description="Build the gold linker plugin for ld-based LTO")
depends_on("mpfr")
depends_on("gmp")
depends_on("mpc") # when @4.5:
depends_on("binutils~libiberty", when='~gold')
depends_on("binutils~libiberty+gold", when='+gold')
# Save these until we can do optional deps.
depends_on("isl", when=DEPENDS_ON_ISL_PREDICATE)
#depends_on("ppl")
#depends_on("cloog")
def install(self, spec, prefix):
# libjava/configure needs a minor fix to install into spack paths.
filter_file(r"'@.*@'", "'@[[:alnum:]]*@'", 'libjava/configure', string=True)
enabled_languages = set(('c', 'c++', 'fortran', 'java', 'objc'))
if spec.satisfies("@4.7.1:"):
enabled_languages.add('go')
# Generic options to compile GCC
options = ["--prefix=%s" % prefix,
"--libdir=%s/lib64" % prefix,
"--disable-multilib",
"--enable-languages=" + ','.join(enabled_languages),
"--with-mpc=%s" % spec['mpc'].prefix,
"--with-mpfr=%s" % spec['mpfr'].prefix,
"--with-gmp=%s" % spec['gmp'].prefix,
"--enable-lto",
"--with-gnu-ld",
"--with-gnu-as",
"--with-quad"]
# Binutils
static_bootstrap_flags = "-static-libstdc++ -static-libgcc"
binutils_options = ["--with-sysroot=/",
"--with-stage1-ldflags=%s %s" % (self.rpath_args, static_bootstrap_flags),
"--with-boot-ldflags=%s %s" % (self.rpath_args, static_bootstrap_flags),
"--with-ld=%s/bin/ld" % spec['binutils'].prefix,
"--with-as=%s/bin/as" % spec['binutils'].prefix]
options.extend(binutils_options)
# Isl
if spec.satisfies(Gcc.DEPENDS_ON_ISL_PREDICATE):
isl_options = ["--with-isl=%s" % spec['isl'].prefix]
options.extend(isl_options)
build_dir = join_path(self.stage.path, 'spack-build')
configure = Executable( join_path(self.stage.source_path, 'configure') )
with working_dir(build_dir, create=True):
# Rest of install is straightforward.
configure(*options)
make()
make("install")
self.write_rpath_specs()
@property
def spec_dir(self):
# e.g. lib64/gcc/x86_64-unknown-linux-gnu/4.9.2
spec_dir = glob("%s/lib64/gcc/*/*" % self.prefix)
return spec_dir[0] if spec_dir else None
def write_rpath_specs(self):
"""Generate a spec file so the linker adds a rpath to the libs
the compiler used to build the executable."""
if not self.spec_dir:
tty.warn("Could not install specs for %s." % self.spec.format('$_$@'))
return
gcc = Executable(join_path(self.prefix.bin, 'gcc'))
lines = gcc('-dumpspecs', return_output=True).strip().split("\n")
specs_file = join_path(self.spec_dir, 'specs')
with closing(open(specs_file, 'w')) as out:
for line in lines:
out.write(line + "\n")
if line.startswith("*link:"):
out.write("-rpath %s/lib:%s/lib64 \\\n"% (self.prefix, self.prefix))
set_install_permissions(specs_file)

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://llnl.github.io/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Gdb(Package):
"""
GDB, the GNU Project debugger, allows you to see what is going on `inside' another program while it executes
-- or what another program was doing at the moment it crashed.
"""
homepage = "https://www.gnu.org/software/gdb"
url = "http://ftp.gnu.org/gnu/gdb/gdb-7.10.tar.gz"
version('7.10.1', 'b93a2721393e5fa226375b42d567d90b')
version('7.10', 'fa6827ad0fd2be1daa418abb11a54d86')
version('7.9.1', 'f3b97de919a9dba84490b2e076ec4cb0')
version('7.9', '8f8ced422fe462a00e0135a643544f17')
version('7.8.2', '8b0ea8b3559d3d90b3ff4952f0aeafbc')
depends_on('texinfo')
def install(self, spec, prefix):
configure('--prefix=%s' % prefix)
make()
make("install")

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from spack import *
class GdkPixbuf(Package):
"""The Gdk Pixbuf is a toolkit for image loading and pixel buffer
manipulation. It is used by GTK+ 2 and GTK+ 3 to load and
manipulate images. In the past it was distributed as part of
GTK+ 2 but it was split off into a separate package in
preparation for the change to GTK+ 3."""
homepage = "https://developer.gnome.org/gdk-pixbuf/"
url = "http://ftp.gnome.org/pub/gnome/sources/gdk-pixbuf/2.31/gdk-pixbuf-2.31.1.tar.xz"
version('2.31.2', '6be6bbc4f356d4b79ab4226860ab8523')
depends_on("glib")
depends_on("jpeg")
depends_on("libpng")
depends_on("libtiff")
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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from spack import *
class Geos(Package):
"""GEOS (Geometry Engine - Open Source) is a C++ port of the Java
Topology Suite (JTS). As such, it aims to contain the complete
functionality of JTS in C++. This includes all the OpenGIS
Simple Features for SQL spatial predicate functions and spatial
operators, as well as specific JTS enhanced topology functions."""
homepage = "http://trac.osgeo.org/geos/"
url = "http://download.osgeo.org/geos/geos-3.4.2.tar.bz2"
version('3.4.2', 'fc5df2d926eb7e67f988a43a92683bae')
version('3.4.1', '4c930dec44c45c49cd71f3e0931ded7e')
version('3.4.0', 'e41318fc76b5dc764a69d43ac6b18488')
version('3.3.9', '4794c20f07721d5011c93efc6ccb8e4e')
version('3.3.8', '75be476d0831a2d14958fed76ca266de')
version('3.3.7', '95ab996d22672b067d92c7dee2170460')
version('3.3.6', '6fadfb941541875f4976f75fb0bbc800')
version('3.3.5', '2ba61afb7fe2c5ddf642d82d7b16e75b')
version('3.3.4', '1bb9f14d57ef06ffa41cb1d67acb55a1')
version('3.3.3', '8454e653d7ecca475153cc88fd1daa26')
extends('python')
depends_on('swig')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix,
"--enable-python")
make()
make("install")

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import os
from spack import *
class Gflags(Package):
"""The gflags package contains a C++ library that implements
commandline flags processing. It includes built-in support for
standard types such as string and the ability to define flags
in the source file in which they are used. Online documentation
available at: https://gflags.github.io/gflags/"""
homepage = "https://gflags.github.io/gflags"
url = "https://github.com/gflags/gflags/archive/v2.1.2.tar.gz"
version('2.1.2', 'ac432de923f9de1e9780b5254884599f')
def install(self, spec, prefix):
cmake("-DCMAKE_INSTALL_PREFIX=" + prefix,
"-DBUILD_SHARED_LIBS=ON")
make()
make("test")
make("install")

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from spack import *
class Ghostscript(Package):
"""an interpreter for the PostScript language and for PDF. """
homepage = "http://ghostscript.com/"
url = "http://downloads.ghostscript.com/public/ghostscript-9.16.tar.gz"
version('9.16', '829319325bbdb83f5c81379a8f86f38f')
parallel = False
def install(self, spec, prefix):
configure("--prefix=%s" %prefix, "--enable-shared")
make()
make("install")

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from spack import *
class Git(Package):
"""Git is a free and open source distributed version control
system designed to handle everything from small to very large
projects with speed and efficiency."""
homepage = "http://git-scm.com"
url = "https://www.kernel.org/pub/software/scm/git/git-2.2.1.tar.gz"
version('2.6.3', 'b711be7628a4a2c25f38d859ee81b423')
version('2.6.2', 'da293290da69f45a86a311ad3cd43dc8')
version('2.6.1', '4c62ee9c5991fe93d99cf2a6b68397fd')
version('2.6.0', 'eb76a07148d94802a1745d759716a57e')
version('2.5.4', '3eca2390cf1fa698b48e2a233563a76b')
version('2.2.1', 'ff41fdb094eed1ec430aed8ee9b9849c')
# Git compiles with curl support by default on but if your system
# does not have it you will not be able to clone https repos
variant("curl", default=False, description="Add the internal support of curl for https clone")
# Git compiles with expat support by default on but if your system
# does not have it you will not be able to push https repos
variant("expat", default=False, description="Add the internal support of expat for https push")
depends_on("openssl")
depends_on("curl", when="+curl")
depends_on("expat", when="+expat")
# Use system perl for now.
# depends_on("perl")
# depends_on("pcre")
depends_on("zlib")
def install(self, spec, prefix):
configure_args = [
"--prefix=%s" % prefix,
"--without-pcre",
"--with-openssl=%s" % spec['openssl'].prefix,
"--with-zlib=%s" % spec['zlib'].prefix
]
if '+curl' in spec:
configure_args.append("--with-curl=%s" % spec['curl'].prefix)
if '+expat' in spec:
configure_args.append("--with-expat=%s" % spec['expat'].prefix)
configure(*configure_args)
make()
make("install")

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from spack import *
class Glib(Package):
"""The GLib package contains a low-level libraries useful for
providing data structure handling for C, portability wrappers
and interfaces for such runtime functionality as an event loop,
threads, dynamic loading and an object system."""
homepage = "https://developer.gnome.org/glib/"
url = "http://ftp.gnome.org/pub/gnome/sources/glib/2.42/glib-2.42.1.tar.xz"
version('2.42.1', '89c4119e50e767d3532158605ee9121a')
depends_on("libffi")
depends_on("zlib")
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install", parallel=False)

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from spack import *
class Glm(Package):
"""
OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on
the OpenGL Shading Language (GLSL) specification.
"""
homepage = "https://github.com/g-truc/glm"
url = "https://github.com/g-truc/glm/archive/0.9.7.1.tar.gz"
version('0.9.7.1', '61af6639cdf652d1cdd7117190afced8')
def install(self, spec, prefix):
with working_dir('spack-build', create=True):
cmake('..', *std_cmake_args)
make()
make("install")

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from spack import *
import os
class Global(Package):
""" The Gnu Global tagging system """
homepage = "http://www.gnu.org/software/global"
url = "http://tamacom.com/global/global-6.5.tar.gz"
version('6.5', 'dfec818b4f53d91721e247cf7b218078')
depends_on('exuberant-ctags')
def install(self, spec, prefix):
config_args = ['--prefix={0}'.format(prefix)]
config_args.append('--with-exuberant-ctags={0}'.format(
os.path.join(spec['exuberant-ctags'].prefix.bin, 'ctags')))
configure(*config_args)
make()
make("install")

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import os
from spack import *
class Glog(Package):
"""C++ implementation of the Google logging module."""
homepage = "https://github.com/google/glog"
url = "https://github.com/google/glog/archive/v0.3.3.tar.gz"
version('0.3.3', 'c1f86af27bd9c73186730aa957607ed0')
def install(self, spec, prefix):
configure("--prefix=" + prefix)
make()
make("install")

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##############################################################################
# Copyright (c) 2013-2015, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Glpk(Package):
"""
The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed
integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in
the form of a callable library
"""
homepage = "https://www.gnu.org/software/glpk"
url = "http://ftp.gnu.org/gnu/glpk/glpk-4.57.tar.gz"
version('4.57', '237531a54f73155842f8defe51aedb0f')
variant('gmp', default=False, description='Activates support for GMP library')
depends_on('gmp', when='+gmp')
def install(self, spec, prefix):
options = ['--prefix=%s' % prefix]
if '+gmp' in spec:
options.append('--with-gmp')
configure(*options)
make()
make("install")

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Gmp(Package):
"""GMP is a free library for arbitrary precision arithmetic,
operating on signed integers, rational numbers, and
floating-point numbers."""
homepage = "https://gmplib.org"
url = "https://gmplib.org/download/gmp/gmp-6.0.0a.tar.bz2"
version('6.1.0' , '86ee6e54ebfc4a90b643a65e402c4048')
version('6.0.0a', 'b7ff2d88cae7f8085bd5006096eed470')
version('6.0.0' , '6ef5869ae735db9995619135bd856b84')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Gmsh(Package):
"""
Gmsh is a free 3D finite element grid generator with a built-in CAD engine and post-processor. Its design goal is
to provide a fast, light and user-friendly meshing tool with parametric input and advanced visualization
capabilities. Gmsh is built around four modules: geometry, mesh, solver and post-processing. The specification of
any input to these modules is done either interactively using the graphical user interface or in ASCII text files
using Gmsh's own scripting language.
"""
homepage = 'http://gmsh.info'
url = 'http://gmsh.info/src/gmsh-2.11.0-source.tgz'
version('2.11.0', 'f15b6e7ac9ca649c9a74440e1259d0db')
# FIXME : Misses dependencies on gmm, PetsC, TetGen
variant('shared', default=True, description='Enables the build of shared libraries')
variant('debug', default=False, description='Builds the library in debug mode')
variant('mpi', default=False, description='Builds MPI support for parser and solver')
variant('fltk', default=False, description='Enables the build of the FLTK GUI')
variant('hdf5', default=False, description='Enables HDF5 support')
variant('compression', default=True, description='Enables IO compression through zlib')
depends_on('blas')
depends_on('lapack')
depends_on('gmp')
depends_on('mpi', when='+mpi')
depends_on('fltk', when='+fltk') # Assumes OpenGL with GLU is already provided by the system
depends_on('hdf5', when='+hdf5')
depends_on('zlib', when='+compression')
def install(self, spec, prefix):
options = []
options.extend(std_cmake_args)
build_directory = join_path(self.stage.path, 'spack-build')
source_directory = self.stage.source_path
if '+shared' in spec:
options.extend(['-DENABLE_BUILD_SHARED:BOOL=ON',
'-DENABLE_BUILD_DYNAMIC:BOOL=ON']) # Builds dynamic executable and installs shared library
else:
options.append('-DENABLE_BUILD_LIB:BOOL=ON') # Builds and installs static library
if '+debug' in spec:
options.append('-DCMAKE_BUILD_TYPE:STRING=Debug')
if '+mpi' in spec:
options.append('-DENABLE_MPI:BOOL=ON')
if '+compression' in spec:
options.append('-DENABLE_COMPRESSED_IO:BOOL=ON')
with working_dir(build_directory, create=True):
cmake(source_directory, *options)
make()
make('install')

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
import os
class Gnuplot(Package):
"""
Gnuplot is a portable command-line driven graphing utility for Linux, OS/2, MS Windows, OSX, VMS, and many other
platforms. The source code is copyrighted but freely distributed (i.e., you don't have to pay for it). It was
originally created to allow scientists and students to visualize mathematical functions and data interactively,
but has grown to support many non-interactive uses such as web scripting. It is also used as a plotting engine by
third-party applications like Octave. Gnuplot has been supported and under active development since 1986
"""
homepage = "http://www.gnuplot.info"
url = "http://downloads.sourceforge.net/project/gnuplot/gnuplot/5.0.1/gnuplot-5.0.1.tar.gz"
version('5.0.1', '79b4f9e203728f76b60b28bcd402d3c7')
depends_on('readline')
depends_on('libcerf')
depends_on('libgd')
depends_on('cairo')
depends_on('pango')
depends_on('wx', when='+wx')
variant('wx', default=False, description='Activates wxWidgets terminal')
def install(self, spec, prefix):
# It seems there's an open bug for wxWidgets support
# See : http://sourceforge.net/p/gnuplot/bugs/1694/
os.environ['TERMLIBS'] = '-lX11'
options = ['--prefix=%s' % prefix]
configure(*options)
make()
make("install")

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from spack import *
class Gnutls(Package):
"""GnuTLS is a secure communications library implementing the SSL,
TLS and DTLS protocols and technologies around them. It
provides a simple C language application programming interface
(API) to access the secure communications protocols as well as
APIs to parse and write X.509, PKCS #12, OpenPGP and other
required structures. It is aimed to be portable and efficient
with focus on security and interoperability."""
homepage = "http://www.gnutls.org"
url = "ftp://ftp.gnutls.org/gcrypt/gnutls/v3.3/gnutls-3.3.9.tar.xz"
version('3.3.9', 'ff61b77e39d09f1140ab5a9cf52c58b6')
depends_on("nettle")
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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from spack import *
class Gperf(Package):
"""GNU gperf is a perfect hash function generator. For a given
list of strings, it produces a hash function and hash table, in
form of C or C++ code, for looking up a value depending on the
input string. The hash function is perfect, which means that the
hash table has no collisions, and the hash table lookup needs a
single string comparison only."""
homepage = "https://www.gnu.org/software/gperf/"
url = "http://ftp.gnu.org/pub/gnu/gperf/gperf-3.0.4.tar.gz"
version('3.0.4', 'c1f1db32fb6598d6a93e6e88796a8632')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Gperftools(Package):
"""Google's fast malloc/free implementation, especially for multi-threaded applications.
Contains tcmalloc, heap-checker, heap-profiler, and cpu-profiler."""
homepage = "https://code.google.com/p/gperftools"
url = "https://googledrive.com/host/0B6NtGsLhIcf7MWxMMF9JdTN3UVk/gperftools-2.3.tar.gz"
version('2.4', '2171cea3bbe053036fb5d5d25176a160', url="https://github.com/gperftools/gperftools/releases/download/gperftools-2.4/gperftools-2.4.tar.gz")
version('2.3', 'f54dd119f0e46ac1f13264f8d97adf90', url="https://googledrive.com/host/0B6NtGsLhIcf7MWxMMF9JdTN3UVk/gperftools-2.3.tar.gz")
depends_on("libunwind")
def install(self, spec, prefix):
configure("--prefix=" + prefix)
make()
make("install")

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from spack import *
class Graphlib(Package):
"""Library to create, manipulate, and export graphs Graphlib."""
homepage = "http://https://github.com/lee218llnl/graphlib"
url = "https://github.com/lee218llnl/graphlib/archive/v2.0.0.tar.gz"
version('2.0.0', '43c6df84f1d38ba5a5dce0ae19371a70')
def install(self, spec, prefix):
cmake(".", *std_cmake_args)
make()
make("install")

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from spack import *
class Graphviz(Package):
"""Graph Visualization Software"""
homepage = "http://www.graphviz.org"
url = "http://www.graphviz.org/pub/graphviz/stable/SOURCES/graphviz-2.38.0.tar.gz"
version('2.38.0', '5b6a829b2ac94efcd5fa3c223ed6d3ae')
parallel = False
depends_on("swig")
depends_on("python")
depends_on("ghostscript")
def install(self, spec, prefix):
configure("--prefix=%s" %prefix)
make()
make("install")

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Gsl(Package):
"""
The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. It is free software under the
GNU General Public License. The library provides a wide range of mathematical routines such as random number
generators, special functions and least-squares fitting. There are over 1000 functions in total with an extensive
test suite.
"""
homepage = "http://www.gnu.org/software/gsl"
url = "http://mirror.switch.ch/ftp/mirror/gnu/gsl/gsl-2.1.tar.gz"
version('2.1' , 'd8f70abafd3e9f0bae03c52d1f4e8de5')
version('2.0' , 'ae44cdfed78ece40e73411b63a78c375')
version('1.16', 'e49a664db13d81c968415cd53f62bc8b')
def install(self, spec, prefix):
configure('--prefix=%s' % prefix)
make()
make("install")

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from spack import *
class Gtkplus(Package):
"""The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications."""
homepage = "http://www.gtk.org"
version('2.24.25', '612350704dd3aacb95355a4981930c6f',
url="http://ftp.gnome.org/pub/gnome/sources/gtk+/2.24/gtk+-2.24.25.tar.xz")
depends_on("atk")
depends_on("gdk-pixbuf")
depends_on("pango")
def patch(self):
# remove disable deprecated flag.
filter_file(r'CFLAGS="-DGDK_PIXBUF_DISABLE_DEPRECATED $CFLAGS"',
'', 'configure', string=True)
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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from spack import *
class Harfbuzz(Package):
"""The Harfbuzz package contains an OpenType text shaping engine."""
homepage = "http://www.freedesktop.org/wiki/Software/HarfBuzz/"
url = "http://www.freedesktop.org/software/harfbuzz/release/harfbuzz-0.9.37.tar.bz2"
version('0.9.37', 'bfe733250e34629a188d82e3b971bc1e')
depends_on("glib")
depends_on("icu")
depends_on("freetype")
def patch(self):
change_sed_delimiter('@', ';', 'src/Makefile.in')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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from spack import *
class Hdf5(Package):
"""HDF5 is a data model, library, and file format for storing and managing
data. It supports an unlimited variety of datatypes, and is designed for
flexible and efficient I/O and for high volume and complex data.
"""
homepage = "http://www.hdfgroup.org/HDF5/"
url = "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.13/src/hdf5-1.8.13.tar.gz"
list_url = "http://www.hdfgroup.org/ftp/HDF5/releases"
list_depth = 3
version('1.8.16', 'b8ed9a36ae142317f88b0c7ef4b9c618')
version('1.8.15', '03cccb5b33dbe975fdcd8ae9dc021f24')
version('1.8.13', 'c03426e9e77d7766944654280b467289')
variant('cxx', default=True, description='Enable C++ support')
variant('fortran', default=True, description='Enable Fortran support')
variant('mpi', default=False, description='Enable MPI support')
variant('threadsafe', default=False, description='Enable multithreading')
depends_on("mpi", when='+mpi')
depends_on("zlib")
# TODO: currently hard-coded to use OpenMPI
def install(self, spec, prefix):
extra_args = []
if '+cxx' in spec:
extra_args.extend([
'--enable-cxx'
])
if '+fortran' in spec:
extra_args.extend([
'--enable-fortran',
'--enable-fortran2003'
])
if '+mpi' in spec:
# The HDF5 configure script warns if cxx and mpi are enabled
# together. There doesn't seem to be a real reason for this, except
# that parts of the MPI interface are not accessible via the C++
# interface. Since they are still accessible via the C interface,
# this is not actually a problem.
extra_args.extend([
"--enable-parallel",
"--enable-unsupported",
"CC=%s" % spec['mpi'].prefix.bin + "/mpicc",
"CXX=%s" % spec['mpi'].prefix.bin + "/mpic++",
"FC=%s" % spec['mpi'].prefix.bin + "/mpifort",
])
if '+threads' in spec:
if '+cxx' in spec or '+fortran' in spec:
die("Cannot use variant +threads with either +cxx or +fortran")
extra_args.extend([
'--enable-threadsafe',
'--disable-hl',
'CPPFLAGS=-DHDatexit=""',
'CFLAGS=-DHDatexit=""'
])
configure(
"--prefix=%s" % prefix,
"--with-zlib=%s" % spec['zlib'].prefix,
"--enable-shared",
*extra_args)
make()
make("install")
def url_for_version(self, version):
v = str(version)
if version == Version("1.2.2"):
return "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-" + v + ".tar.gz"
elif version < Version("1.7"):
return "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-" + version.up_to(2) + "/hdf5-" + v + ".tar.gz"
else:
return "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-" + v + "/src/hdf5-" + v + ".tar.gz"

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from spack import *
class Hwloc(Package):
"""The Portable Hardware Locality (hwloc) software package
provides a portable abstraction (across OS, versions,
architectures, ...) of the hierarchical topology of modern
architectures, including NUMA memory nodes, sockets, shared
caches, cores and simultaneous multithreading. It also gathers
various system attributes such as cache and memory information
as well as the locality of I/O devices such as network
interfaces, InfiniBand HCAs or GPUs. It primarily aims at
helping applications with gathering information about modern
computing hardware so as to exploit it accordingly and
efficiently."""
homepage = "http://www.open-mpi.org/projects/hwloc/"
url = "http://www.open-mpi.org/software/hwloc/v1.9/downloads/hwloc-1.9.tar.gz"
list_url = "http://www.open-mpi.org/software/hwloc/"
list_depth = 3
version('1.11.2', '486169cbe111cdea57be12638828ebbf')
version('1.11.1', '002742efd3a8431f98d6315365a2b543')
version('1.9', '1f9f9155682fe8946a97c08896109508')
depends_on('libpciaccess')
def url_for_version(self, version):
return "http://www.open-mpi.org/software/hwloc/v%s/downloads/hwloc-%s.tar.gz" % (version.up_to(2), version)
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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from spack import *
class Hypre(Package):
"""Hypre is a library of high performance preconditioners that
features parallel multigrid methods for both structured and
unstructured grid problems."""
homepage = "http://computation.llnl.gov/project/linear_solvers/software.php"
url = "http://computation.llnl.gov/project/linear_solvers/download/hypre-2.10.0b.tar.gz"
version('2.10.0b', '768be38793a35bb5d055905b271f5b8e')
depends_on("mpi")
depends_on("blas")
depends_on("lapack")
def install(self, spec, prefix):
blas_dir = spec['blas'].prefix
lapack_dir = spec['lapack'].prefix
# Hypre's source is staged under ./src so we'll have to manually
# cd into it.
with working_dir("src"):
configure(
"--prefix=%s" % prefix,
"--with-blas-libs=blas",
"--with-blas-lib-dirs=%s/lib" % blas_dir,
"--with-lapack-libs=\"lapack blas\"",
"--with-lapack-lib-dirs=%s/lib" % lapack_dir,
"--with-MPI")
make()
make("install")

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from spack import *
class Icu(Package):
"""The International Components for Unicode (ICU) package is a
mature, widely used set of C/C++ libraries providing Unicode and
Globalization support for software applications. ICU is widely
portable and gives applications the same results on all
platforms."""
# FIXME: add a proper url for your package's homepage here.
homepage = "http://www.example.com"
url = "http://download.icu-project.org/files/icu4c/54.1/icu4c-54_1-src.tgz"
version('54.1', 'e844caed8f2ca24c088505b0d6271bc0')
def url_for_version(self, version):
return "http://download.icu-project.org/files/icu4c/%s/icu4c-%s-src.tgz" % (
version, str(version).replace('.', '_'))
def install(self, spec, prefix):
with working_dir("source"):
configure("--prefix=%s" % prefix)
make()
make("install")

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from spack import *
class Icu4c(Package):
"""ICU is a mature, widely used set of C/C++ and Java libraries
providing Unicode and Globalization support for software applications."""
homepage = "http://site.icu-project.org/"
url = "http://downloads.sourceforge.net/project/icu/ICU4C/54.1/icu4c-54_1-src.tgz"
version('54_1', 'e844caed8f2ca24c088505b0d6271bc0')
def install(self, spec, prefix):
cd("source")
configure("--prefix=%s" % prefix)
make()
make("install")

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from spack import *
class Isl(Package):
"""isl is a thread-safe C library for manipulating sets and
relations of integer points bounded by affine constraints."""
homepage = "http://isl.gforge.inria.fr"
url = "http://isl.gforge.inria.fr/isl-0.14.tar.bz2"
version('0.14', 'acd347243fca5609e3df37dba47fd0bb')
depends_on("gmp")
def install(self, spec, prefix):
configure("--prefix=%s" % prefix,
"--with-gmp-prefix=%s" % spec['gmp'].prefix)
make()
make("install")

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#------------------------------------------------------------------------------
# Author: Justin Too <too1@llnl.gov>
#------------------------------------------------------------------------------
import distutils
from distutils import dir_util
from subprocess import call
import spack
from spack import *
import llnl.util.tty as tty
class Jdk(Package):
"""The Java Development Kit (JDK) released by Oracle Corporation
in the form of a binary product aimed at Java developers."""
homepage = "http://www.oracle.com/technetwork/java/javase/downloads/index.html"
version('8u66-linux-x64', '88f31f3d642c3287134297b8c10e61bf',
url="http://download.oracle.com/otn-pub/java/jdk/8u66-b17/jdk-8u66-linux-x64.tar.gz")
# Oracle requires that you accept their License Agreement in order
# to access the Java packages in download.oracle.com. In order to
# automate this process, we need to utilize these additional curl
# commandline options.
#
# See http://stackoverflow.com/questions/10268583/how-to-automate-download-and-installation-of-java-jdk-on-linux
curl_options=[
'-j', # junk cookies
'-H', # specify required License Agreement cookie
'Cookie: oraclelicense=accept-securebackup-cookie']
def do_fetch(self):
# Add our custom curl commandline options
tty.msg(
"[Jdk] Adding required commandline options to curl " +
"before performing fetch: %s" %
(self.curl_options))
for option in self.curl_options:
spack.curl.add_default_arg(option)
# Now perform the actual fetch
super(Jdk, self).do_fetch()
def install(self, spec, prefix):
distutils.dir_util.copy_tree(".", prefix)

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