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r-*: remove forward declared dependencies that fail audit

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This commit is contained in:
Wouter Deconinck 2024-12-28 15:21:36 -06:00
parent f1bfb08998
commit 5a20c4d203
7 changed files with 3 additions and 13 deletions
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2
var/spack/repos/builtin/packages/r-delayedarray/package.py
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@ -44,7 +44,7 @@ class RDelayedarray(RPackage):
depends_on("r-biocgenerics@0.31.5:", type=("build", "run"), when="@0.16.1:")
depends_on("r-biocgenerics@0.37.0:", type=("build", "run"), when="@0.20.1:")
depends_on("r-biocgenerics@0.43.4:", type=("build", "run"), when="@0.24.0:")
depends_on("r-biocgenerics@0.53.3:", type=("build", "run"), when="@0.33.2:")
depends_on("r-biocgenerics@0.51.3:", type=("build", "run"), when="@0.31.13:")
depends_on("r-matrixgenerics@1.1.3:", type=("build", "run"), when="@0.16.1:")
depends_on("r-s4vectors@0.14.3:", type=("build", "run"))
depends_on("r-s4vectors@0.15.3:", type=("build", "run"), when="@0.4.1:")

5
var/spack/repos/builtin/packages/r-genomeinfodb/package.py
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@ -32,17 +32,14 @@ class RGenomeinfodb(RPackage):
version("1.12.3", commit="2deef3f0571b7f622483257bc22d2509ab5a0369")
depends_on("r@3.1:", type=("build", "run"))
depends_on("r@4.0.0:", type=("build", "run"), when="@1.30.1:")
depends_on("r@4.0.0:", type=("build", "run"), when="@1.27.3:")
depends_on("r-biocgenerics@0.13.8:", type=("build", "run"))
depends_on("r-biocgenerics@0.37.0:", type=("build", "run"), when="@1.30.1:")
depends_on("r-biocgenerics@0.53.2:", type=("build", "run"), when="@1.43.1:")
depends_on("r-s4vectors@0.9.25:", type=("build", "run"))
depends_on("r-s4vectors@0.17.25:", type=("build", "run"), when="@1.16.0:")
depends_on("r-s4vectors@0.25.12:", type=("build", "run"), when="@1.26.2:")
depends_on("r-s4vectors@0.45.2:", type=("build", "run"), when="@1.43.1:")
depends_on("r-iranges@1.99.26:", type=("build", "run"))
depends_on("r-iranges@2.13.12:", type=("build", "run"), when="@1.16.0:")
depends_on("r-iranges@2.41.1:", type=("build", "run"), when="@1.43.1:")
depends_on("r-genomeinfodbdata", type=("build", "run"))
depends_on("r-ucsc-utils", type=("build", "run"), when="@1.39.12:")

4
var/spack/repos/builtin/packages/r-genomicranges/package.py
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@ -42,12 +42,10 @@ class RGenomicranges(RPackage):
depends_on("r-biocgenerics@0.21.2:", type=("build", "run"))
depends_on("r-biocgenerics@0.25.3:", type=("build", "run"), when="@1.32.7:")
depends_on("r-biocgenerics@0.37.0:", type=("build", "run"), when="@1.46.1:")
depends_on("r-biocgenerics@0.53.2:", type=("build", "run"), when="@1.59.1:")
depends_on("r-s4vectors@0.9.47:", type=("build", "run"))
depends_on("r-s4vectors@0.17.32:", type=("build", "run"), when="@1.32.7:")
depends_on("r-s4vectors@0.19.11:", type=("build", "run"), when="@1.34.0:")
depends_on("r-s4vectors@0.27.12:", type=("build", "run"), when="@1.42.0:")
depends_on("r-s4vectors@0.45.2:", type=("build", "run"), when="@1.59.1:")
depends_on("r-iranges@2.9.11:", type=("build", "run"))
depends_on("r-iranges@2.11.16:", type=("build", "run"), when="@1.30.3:")
depends_on("r-iranges@2.14.4:", type=("build", "run"), when="@1.32.7:")
@ -55,11 +53,9 @@ class RGenomicranges(RPackage):
depends_on("r-iranges@2.17.1:", type=("build", "run"), when="@1.36.1:")
depends_on("r-iranges@2.23.9:", type=("build", "run"), when="@1.42.0:")
depends_on("r-iranges@2.31.2:", type=("build", "run"), when="@1.50.1:")
depends_on("r-iranges@2.41.1:", type=("build", "run"), when="@1.59.1:")
depends_on("r-genomeinfodb@1.11.5:", type=("build", "run"))
depends_on("r-genomeinfodb@1.13.1:", type=("build", "run"), when="@1.30.3:")
depends_on("r-genomeinfodb@1.15.2:", type=("build", "run"), when="@1.32.7:")
depends_on("r-genomeinfodb@1.43.1:", type=("build", "run"), when="@1.59.1:")
depends_on("r-xvector", type=("build", "run"))
depends_on("r-xvector@0.19.8:", type=("build", "run"), when="@1.32.7:")
depends_on("r-xvector@0.29.2:", type=("build", "run"), when="@1.42.0:")

1
var/spack/repos/builtin/packages/r-hdf5array/package.py
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@ -44,7 +44,6 @@ class RHdf5array(RPackage):
depends_on("r-delayedarray@0.7.41:", type=("build", "run"), when="@1.10.1:")
depends_on("r-delayedarray@0.9.3:", type=("build", "run"), when="@1.12.3:")
depends_on("r-delayedarray@0.15.16:", type=("build", "run"), when="@1.18.0:")
depends_on("r-delayedarray@0.33.1:", type=("build", "run"), when="@1.35.1:")
depends_on("r-rhdf5", type=("build", "run"))
depends_on("r-rhdf5@2.25.6:", type=("build", "run"), when="@1.10.1:")
depends_on("r-rhdf5@2.31.6:", type=("build", "run"), when="@1.18.0:")

2
var/spack/repos/builtin/packages/r-iranges/package.py
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@ -42,7 +42,6 @@ class RIranges(RPackage):
depends_on("r-biocgenerics@0.25.3:", type=("build", "run"), when="@2.14.12:")
depends_on("r-biocgenerics@0.36.0:", type=("build", "run"), when="@2.24.1:")
depends_on("r-biocgenerics@0.39.2:", type=("build", "run"), when="@2.28.0:")
depends_on("r-biocgenerics@0.53.2:", type=("build", "run"), when="@2.41.2:")
depends_on("r-s4vectors@0.13.17:", type=("build", "run"))
depends_on("r-s4vectors@0.15.5:", type=("build", "run"), when="@2.12.0:")
depends_on("r-s4vectors@0.18.2:", type=("build", "run"), when="@2.14.12:")
@ -52,4 +51,3 @@ class RIranges(RPackage):
depends_on("r-s4vectors@0.27.12:", type=("build", "run"), when="@2.24.1:")
depends_on("r-s4vectors@0.29.19:", type=("build", "run"), when="@2.28.0:")
depends_on("r-s4vectors@0.33.3:", type=("build", "run"), when="@2.30.0:")
depends_on("r-s4vectors@0.45.2:", type=("build", "run"), when="@2.41.1:")

1
var/spack/repos/builtin/packages/r-matrixstats/package.py
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@ -16,6 +16,7 @@ class RMatrixstats(RPackage):
cran = "matrixStats"
version("1.4.1", sha256="ac6d65cab6ca30926f35bc3bc59b869946ae92e4738ceca90fad6620fc6ecd10")
version("1.3.0", sha256="413ee607d95b243c514b4a7c4944c2caea1fb264d27c96ff547c3939f893245a")
version("0.63.0", sha256="c000b60421742eb035ff4ceedd3e588a79e4b28985484f0c81361e5a6c351f5f")
version("0.62.0", sha256="85e2016b6dd20cbfe32d38a2ef2578ae80e688d9a3590aefd1d2f4bf4bd44eca")

1
var/spack/repos/builtin/packages/r-s4vectors/package.py
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@ -43,4 +43,3 @@ class RS4vectors(RPackage):
depends_on("r-biocgenerics@0.31.1:", type=("build", "run"), when="@0.26.1:")
depends_on("r-biocgenerics@0.36.0:", type=("build", "run"), when="@0.28.1:")
depends_on("r-biocgenerics@0.37.0:", type=("build", "run"), when="@0.32.3:")
depends_on("r-biocgenerics@0.53.2:", type=("build", "run"), when="@0.45.2:")