Merge pull request #1351 from glennpj/r_htmlwidgets
New packages - R htmlwidgets
This commit is contained in:
becker33
GitHub
commit
5b7ec8de95
42
var/spack/repos/builtin/packages/r-base64enc/package.py
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42
var/spack/repos/builtin/packages/r-base64enc/package.py
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|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RBase64enc(Package):
|
||||||
|
"""This package provides tools for handling base64 encoding. It is more
|
||||||
|
flexible than the orphaned base64 package."""
|
||||||
|
|
||||||
|
homepage = "http://www.rforge.net/base64enc"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/base64enc_0.1-3.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/base64enc"
|
||||||
|
|
||||||
|
version('0.1-3', '0f476dacdd11a3e0ad56d13f5bc2f190')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
43
var/spack/repos/builtin/packages/r-cluster/package.py
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43
var/spack/repos/builtin/packages/r-cluster/package.py
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|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RCluster(Package):
|
||||||
|
"""Methods for Cluster analysis. Much extended the original from Peter
|
||||||
|
Rousseeuw, Anja Struyf and Mia Hubert, based on Kaufman and Rousseeuw
|
||||||
|
(1990) "Finding Groups in Data"."""
|
||||||
|
|
||||||
|
homepage = "https://cran.r-project.org/web/packages/cluster/index.html"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/cluster_2.0.4.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/cluster"
|
||||||
|
|
||||||
|
version('2.0.4', 'bb4deceaafb1c42bb1278d5d0dc11e59')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
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|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
41
var/spack/repos/builtin/packages/r-codetools/package.py
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41
var/spack/repos/builtin/packages/r-codetools/package.py
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@ -0,0 +1,41 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RCodetools(Package):
|
||||||
|
"""Code analysis tools for R."""
|
||||||
|
|
||||||
|
homepage = "https://cran.r-project.org/web/packages/codetools/index.html"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/codetools_0.2-14.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/codetools"
|
||||||
|
|
||||||
|
version('0.2-14', '7ec41d4f8bd6ba85facc8c5e6adc1f4d')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
49
var/spack/repos/builtin/packages/r-diagrammer/package.py
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49
var/spack/repos/builtin/packages/r-diagrammer/package.py
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@ -0,0 +1,49 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RDiagrammer(Package):
|
||||||
|
"""Create graph diagrams and flowcharts using R."""
|
||||||
|
|
||||||
|
homepage = "https://github.com/rich-iannone/DiagrammeR"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/DiagrammeR_0.8.4.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/DiagrammeR"
|
||||||
|
|
||||||
|
version('0.8.4', '9ee295c744f5d4ba9a84289ca7bdaf1a')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-htmlwidgets', type=nolink)
|
||||||
|
depends_on('r-igraph', type=nolink)
|
||||||
|
depends_on('r-influencer', type=nolink)
|
||||||
|
depends_on('r-rstudioapi@0.6:', type=nolink)
|
||||||
|
depends_on('r-stringr', type=nolink)
|
||||||
|
depends_on('r-visnetwork', type=nolink)
|
||||||
|
depends_on('r-scales', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
45
var/spack/repos/builtin/packages/r-doparallel/package.py
Normal file
45
var/spack/repos/builtin/packages/r-doparallel/package.py
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@ -0,0 +1,45 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RDoparallel(Package):
|
||||||
|
"""Provides a parallel backend for the %dopar% function using the parallel
|
||||||
|
package."""
|
||||||
|
|
||||||
|
homepage = "https://cran.r-project.org/web/packages/doParallel/index.html"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/doParallel_1.0.10.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/doParallel"
|
||||||
|
|
||||||
|
version('1.0.10', 'd9fbde8f315d98d055483ee3493c9b43')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-foreach', type=nolink)
|
||||||
|
depends_on('r-iterators', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
47
var/spack/repos/builtin/packages/r-dt/package.py
Normal file
47
var/spack/repos/builtin/packages/r-dt/package.py
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@ -0,0 +1,47 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RDt(Package):
|
||||||
|
"""Data objects in R can be rendered as HTML tables using the JavaScript
|
||||||
|
library 'DataTables' (typically via R Markdown or Shiny). The 'DataTables'
|
||||||
|
library has been included in this R package. The package name 'DT' is an
|
||||||
|
abbreviation of 'DataTables'."""
|
||||||
|
|
||||||
|
homepage = "http://rstudio.github.io/DT"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/DT_0.1.tar.gz"
|
||||||
|
|
||||||
|
version('0.1', '5c8df984921fa484784ec4b8a4fb6f3c')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-htmltools', type=nolink)
|
||||||
|
depends_on('r-htmlwidgets', type=nolink)
|
||||||
|
depends_on('r-magrittr', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
50
var/spack/repos/builtin/packages/r-dygraphs/package.py
Normal file
50
var/spack/repos/builtin/packages/r-dygraphs/package.py
Normal file
@ -0,0 +1,50 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RDygraphs(Package):
|
||||||
|
"""An R interface to the 'dygraphs' JavaScript charting library (a copy of
|
||||||
|
which is included in the package). Provides rich facilities for charting
|
||||||
|
time-series data in R, including highly configurable series- and
|
||||||
|
axis-display and interactive features like zoom/pan and series/point
|
||||||
|
highlighting."""
|
||||||
|
|
||||||
|
homepage = "https://cran.r-project.org/web/packages/dygraphs/index.html"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/dygraphs_0.9.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/dygraphs"
|
||||||
|
|
||||||
|
version('0.9', '7f0ce4312bcd3f0a58b8c03b2772f833')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-magrittr', type=nolink)
|
||||||
|
depends_on('r-htmlwidgets', type=nolink)
|
||||||
|
depends_on('r-zoo', type=nolink)
|
||||||
|
depends_on('r-xts', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
50
var/spack/repos/builtin/packages/r-foreach/package.py
Normal file
50
var/spack/repos/builtin/packages/r-foreach/package.py
Normal file
@ -0,0 +1,50 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RForeach(Package):
|
||||||
|
"""Support for the foreach looping construct. Foreach is an idiom that
|
||||||
|
allows for iterating over elements in a collection, without the use of an
|
||||||
|
explicit loop counter. This package in particular is intended to be used
|
||||||
|
for its return value, rather than for its side effects. In that sense, it
|
||||||
|
is similar to the standard lapply function, but doesn't require the
|
||||||
|
evaluation of a function. Using foreach without side effects also
|
||||||
|
facilitates executing the loop in parallel."""
|
||||||
|
|
||||||
|
homepage = "https://cran.r-project.org/web/packages/foreach/index.html"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/foreach_1.4.3.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/foreach"
|
||||||
|
|
||||||
|
version('1.4.3', 'ef45768126661b259f9b8994462c49a0')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-codetools', type=nolink)
|
||||||
|
depends_on('r-iterators', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
41
var/spack/repos/builtin/packages/r-gridbase/package.py
Normal file
41
var/spack/repos/builtin/packages/r-gridbase/package.py
Normal file
@ -0,0 +1,41 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RGridbase(Package):
|
||||||
|
"""Integration of base and grid graphics."""
|
||||||
|
|
||||||
|
homepage = "https://cran.r-project.org/web/packages/gridBase/index.html"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/gridBase_0.4-7.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/gridBase"
|
||||||
|
|
||||||
|
version('0.4-7', '6d5064a85f5c966a92ee468ae44c5f1f')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
47
var/spack/repos/builtin/packages/r-htmlwidgets/package.py
Normal file
47
var/spack/repos/builtin/packages/r-htmlwidgets/package.py
Normal file
@ -0,0 +1,47 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RHtmlwidgets(Package):
|
||||||
|
"""A framework for creating HTML widgets that render in various contexts
|
||||||
|
including the R console, 'R Markdown' documents, and 'Shiny' web
|
||||||
|
applications."""
|
||||||
|
|
||||||
|
homepage = "https://github.com/ramnathv/htmlwidgets"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/htmlwidgets_0.6.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/htmlwidgets"
|
||||||
|
|
||||||
|
version('0.6', '7fa522d2eda97593978021bda9670c0e')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-htmltools', type=nolink)
|
||||||
|
depends_on('r-jsonlite', type=nolink)
|
||||||
|
depends_on('r-yaml', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
50
var/spack/repos/builtin/packages/r-igraph/package.py
Normal file
50
var/spack/repos/builtin/packages/r-igraph/package.py
Normal file
@ -0,0 +1,50 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RIgraph(Package):
|
||||||
|
"""Routines for simple graphs and network analysis. It can handle large
|
||||||
|
graphs very well and provides functions for generating random and regular
|
||||||
|
graphs, graph visualization, centrality methods and much more."""
|
||||||
|
|
||||||
|
homepage = "http://igraph.org/"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/igraph_1.0.1.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/igraph"
|
||||||
|
|
||||||
|
version('1.0.1', 'ea33495e49adf4a331e4ba60ba559065')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-matrix', type=nolink)
|
||||||
|
depends_on('r-magrittr', type=nolink)
|
||||||
|
depends_on('r-nmf', type=nolink)
|
||||||
|
depends_on('r-irlba', type=nolink)
|
||||||
|
depends_on('gmp')
|
||||||
|
depends_on('libxml2')
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
50
var/spack/repos/builtin/packages/r-influencer/package.py
Normal file
50
var/spack/repos/builtin/packages/r-influencer/package.py
Normal file
@ -0,0 +1,50 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RInfluencer(Package):
|
||||||
|
"""Provides functionality to compute various node centrality measures on
|
||||||
|
networks. Included are functions to compute betweenness centrality (by
|
||||||
|
utilizing Madduri and Bader's SNAP library), implementations of Burt's
|
||||||
|
constraint and effective network size (ENS) metrics, Borgatti's algorithm
|
||||||
|
to identify key players, and Valente's bridging metric. On Unix systems,
|
||||||
|
the betweenness, Key Players, and bridging implementations are parallelized
|
||||||
|
with OpenMP, which may run faster on systems which have OpenMP
|
||||||
|
configured."""
|
||||||
|
|
||||||
|
homepage = "https://github.com/rcc-uchicago/influenceR"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/influenceR_0.1.0.tar.gz"
|
||||||
|
|
||||||
|
version('0.1.0', '6c8b6decd78c341364b5811fb3050ba5')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-igraph', type=nolink)
|
||||||
|
depends_on('r-matrix', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
45
var/spack/repos/builtin/packages/r-irlba/package.py
Normal file
45
var/spack/repos/builtin/packages/r-irlba/package.py
Normal file
@ -0,0 +1,45 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RIrlba(Package):
|
||||||
|
"""Fast and memory efficient methods for truncated singular and eigenvalue
|
||||||
|
decompositions and principal component analysis of large sparse or dense
|
||||||
|
matrices."""
|
||||||
|
|
||||||
|
homepage = "https://cran.r-project.org/web/packages/irlba/index.html"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/irlba_2.0.0.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/irlba"
|
||||||
|
|
||||||
|
version('2.0.0', '557674cf8b68fea5b9f231058c324d26')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-matrix', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
42
var/spack/repos/builtin/packages/r-iterators/package.py
Normal file
42
var/spack/repos/builtin/packages/r-iterators/package.py
Normal file
@ -0,0 +1,42 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RIterators(Package):
|
||||||
|
"""Support for iterators, which allow a programmer to traverse through all
|
||||||
|
the elements of a vector, list, or other collection of data."""
|
||||||
|
|
||||||
|
homepage = "https://cran.r-project.org/web/packages/iterators/index.html"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/iterators_1.0.8.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/iterators"
|
||||||
|
|
||||||
|
version('1.0.8', '2ded7f82cddd8174f1ec98607946c6ee')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
54
var/spack/repos/builtin/packages/r-leaflet/package.py
Normal file
54
var/spack/repos/builtin/packages/r-leaflet/package.py
Normal file
@ -0,0 +1,54 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RLeaflet(Package):
|
||||||
|
"""Create and customize interactive maps using the 'Leaflet' JavaScript
|
||||||
|
library and the 'htmlwidgets' package. These maps can be used directly from
|
||||||
|
the R console, from 'RStudio', in Shiny apps and R Markdown documents."""
|
||||||
|
|
||||||
|
homepage = "http://rstudio.github.io/leaflet/"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/leaflet_1.0.1.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/leaflet"
|
||||||
|
|
||||||
|
version('1.0.1', '7f3d8b17092604d87d4eeb579f73d5df')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-base64enc', type=nolink)
|
||||||
|
depends_on('r-htmlwidgets', type=nolink)
|
||||||
|
depends_on('r-htmltools', type=nolink)
|
||||||
|
depends_on('r-magrittr', type=nolink)
|
||||||
|
depends_on('r-markdown', type=nolink)
|
||||||
|
depends_on('r-png', type=nolink)
|
||||||
|
depends_on('r-rcolorbrewer', type=nolink)
|
||||||
|
depends_on('r-raster', type=nolink)
|
||||||
|
depends_on('r-scales', type=nolink)
|
||||||
|
depends_on('r-sp', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
47
var/spack/repos/builtin/packages/r-markdown/package.py
Normal file
47
var/spack/repos/builtin/packages/r-markdown/package.py
Normal file
@ -0,0 +1,47 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RMarkdown(Package):
|
||||||
|
"""Provides R bindings to the 'Sundown' 'Markdown' rendering library
|
||||||
|
(https://github.com/vmg/sundown). 'Markdown' is a plain-text formatting
|
||||||
|
syntax that can be converted to 'XHTML' or other formats. See
|
||||||
|
http://en.wikipedia.org/wiki/Markdown for more information about
|
||||||
|
'Markdown'."""
|
||||||
|
|
||||||
|
homepage = "https://github.com/rstudio/markdown"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/markdown_0.7.7.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/markdown"
|
||||||
|
|
||||||
|
version('0.7.7', '72deca9c675c7cc9343048edbc29f7ff')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-mime', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
46
var/spack/repos/builtin/packages/r-networkd3/package.py
Normal file
46
var/spack/repos/builtin/packages/r-networkd3/package.py
Normal file
@ -0,0 +1,46 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RNetworkd3(Package):
|
||||||
|
"""Creates 'D3' 'JavaScript' network, tree, dendrogram, and Sankey graphs
|
||||||
|
from 'R'."""
|
||||||
|
|
||||||
|
homepage = "http://cran.r-project.org/package=networkD3"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/networkD3_0.2.12.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/networkD3"
|
||||||
|
|
||||||
|
version('0.2.12', '356fe4be59698e6fb052644bd9659d84')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-htmlwidgets', type=nolink)
|
||||||
|
depends_on('r-igraph', type=nolink)
|
||||||
|
depends_on('r-magrittr', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
60
var/spack/repos/builtin/packages/r-nmf/package.py
Normal file
60
var/spack/repos/builtin/packages/r-nmf/package.py
Normal file
@ -0,0 +1,60 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RNmf(Package):
|
||||||
|
"""Provides a framework to perform Non-negative Matrix Factorization (NMF).
|
||||||
|
The package implements a set of already published algorithms and seeding
|
||||||
|
methods, and provides a framework to test, develop and plug new/custom
|
||||||
|
algorithms. Most of the built-in algorithms have been optimized in C++, and
|
||||||
|
the main interface function provides an easy way of performing parallel
|
||||||
|
computations on multicore machines.."""
|
||||||
|
|
||||||
|
homepage = "http://renozao.github.io/NMF"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/NMF_0.20.6.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/NMF"
|
||||||
|
|
||||||
|
version('0.20.6', '81df07b3bf710a611db5af24730ff3d0')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-pkgmaker', type=nolink)
|
||||||
|
depends_on('r-registry', type=nolink)
|
||||||
|
depends_on('r-rngtools', type=nolink)
|
||||||
|
depends_on('r-cluster', type=nolink)
|
||||||
|
depends_on('r-stringr', type=nolink)
|
||||||
|
depends_on('r-digest', type=nolink)
|
||||||
|
depends_on('r-gridbase', type=nolink)
|
||||||
|
depends_on('r-colorspace', type=nolink)
|
||||||
|
depends_on('r-rcolorbrewer', type=nolink)
|
||||||
|
depends_on('r-foreach', type=nolink)
|
||||||
|
depends_on('r-doparallel', type=nolink)
|
||||||
|
depends_on('r-ggplot2', type=nolink)
|
||||||
|
depends_on('r-reshape2', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
53
var/spack/repos/builtin/packages/r-pkgmaker/package.py
Normal file
53
var/spack/repos/builtin/packages/r-pkgmaker/package.py
Normal file
@ -0,0 +1,53 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RPkgmaker(Package):
|
||||||
|
"""This package provides some low-level utilities to use for package
|
||||||
|
development. It currently provides managers for multiple package specific
|
||||||
|
options and registries, vignette, unit test and bibtex related utilities.
|
||||||
|
It serves as a base package for packages like NMF, RcppOctave, doRNG, and
|
||||||
|
as an incubator package for other general purposes utilities, that will
|
||||||
|
eventually be packaged separately. It is still under heavy development and
|
||||||
|
changes in the interface(s) are more than likely to happen."""
|
||||||
|
|
||||||
|
homepage = "https://renozao.github.io/pkgmaker"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/pkgmaker_0.22.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/pkgmaker"
|
||||||
|
|
||||||
|
version('0.22', '73a0c6d3e84c6dadf3de7582ef7e88a4')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-registry', type=nolink)
|
||||||
|
depends_on('r-codetools', type=nolink)
|
||||||
|
depends_on('r-digest', type=nolink)
|
||||||
|
depends_on('r-stringr', type=nolink)
|
||||||
|
depends_on('r-xtable', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
45
var/spack/repos/builtin/packages/r-png/package.py
Normal file
45
var/spack/repos/builtin/packages/r-png/package.py
Normal file
@ -0,0 +1,45 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RPng(Package):
|
||||||
|
"""This package provides an easy and simple way to read, write and display
|
||||||
|
bitmap images stored in the PNG format. It can read and write both files
|
||||||
|
and in-memory raw vectors."""
|
||||||
|
|
||||||
|
homepage = "http://www.rforge.net/png/"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/png_0.1-7.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/png"
|
||||||
|
|
||||||
|
version('0.1-7', '1ebc8b8aa5979b12c5ec2384b30d649f')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('libpng')
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
46
var/spack/repos/builtin/packages/r-raster/package.py
Normal file
46
var/spack/repos/builtin/packages/r-raster/package.py
Normal file
@ -0,0 +1,46 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RRaster(Package):
|
||||||
|
"""Reading, writing, manipulating, analyzing and modeling of gridded
|
||||||
|
spatial data. The package implements basic and high-level functions.
|
||||||
|
Processing of very large files is supported."""
|
||||||
|
|
||||||
|
homepage = "http://cran.r-project.org/package=raster"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/raster_2.5-8.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/raster"
|
||||||
|
|
||||||
|
version('2.5-8', '2a7db931c74d50516e82d04687c0a577')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-sp', type=nolink)
|
||||||
|
depends_on('r-rcpp', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
41
var/spack/repos/builtin/packages/r-registry/package.py
Normal file
41
var/spack/repos/builtin/packages/r-registry/package.py
Normal file
@ -0,0 +1,41 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RRegistry(Package):
|
||||||
|
"""Provides a generic infrastructure for creating and using registries."""
|
||||||
|
|
||||||
|
homepage = "https://cran.r-project.org/web/packages/registry/index.html"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/registry_0.3.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/registry"
|
||||||
|
|
||||||
|
version('0.3', '85345b334ec81eb3da6edcbb27c5f421')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
49
var/spack/repos/builtin/packages/r-rngtools/package.py
Normal file
49
var/spack/repos/builtin/packages/r-rngtools/package.py
Normal file
@ -0,0 +1,49 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RRngtools(Package):
|
||||||
|
"""This package contains a set of functions for working with Random Number
|
||||||
|
Generators (RNGs). In particular, it defines a generic S4 framework for
|
||||||
|
getting/setting the current RNG, or RNG data that are embedded into objects
|
||||||
|
for reproducibility. Notably, convenient default methods greatly facilitate
|
||||||
|
the way current RNG settings can be changed."""
|
||||||
|
|
||||||
|
homepage = "https://renozao.github.io/rngtools"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/rngtools_1.2.4.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/rngtools"
|
||||||
|
|
||||||
|
version('1.2.4', '715967f8b3af2848a76593a7c718c1cd')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-pkgmaker', type=nolink)
|
||||||
|
depends_on('r-stringr', type=nolink)
|
||||||
|
depends_on('r-digest', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
@ -33,6 +33,7 @@ class RRstudioapi(Package):
|
|||||||
url = "https://cran.r-project.org/src/contrib/rstudioapi_0.5.tar.gz"
|
url = "https://cran.r-project.org/src/contrib/rstudioapi_0.5.tar.gz"
|
||||||
list_url = "https://cran.r-project.org/src/contrib/Archive/rstudioapi"
|
list_url = "https://cran.r-project.org/src/contrib/Archive/rstudioapi"
|
||||||
|
|
||||||
|
version('0.6', 'fdb13bf46aab02421557e713fceab66b')
|
||||||
version('0.5', '6ce1191da74e7bcbf06b61339486b3ba')
|
version('0.5', '6ce1191da74e7bcbf06b61339486b3ba')
|
||||||
|
|
||||||
extends('R')
|
extends('R')
|
||||||
|
|||||||
46
var/spack/repos/builtin/packages/r-sp/package.py
Normal file
46
var/spack/repos/builtin/packages/r-sp/package.py
Normal file
@ -0,0 +1,46 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RSp(Package):
|
||||||
|
"""Classes and methods for spatial data; the classes document where the
|
||||||
|
spatial location information resides, for 2D or 3D data. Utility functions
|
||||||
|
are provided, e.g. for plotting data as maps, spatial selection, as well as
|
||||||
|
methods for retrieving coordinates, for subsetting, print, summary, etc."""
|
||||||
|
|
||||||
|
homepage = "https://github.com/edzer/sp/"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/sp_1.2-3.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/sp"
|
||||||
|
|
||||||
|
version('1.2-3', 'f0e24d993dec128642ee66b6b47b10c1')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-lattice', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
47
var/spack/repos/builtin/packages/r-threejs/package.py
Normal file
47
var/spack/repos/builtin/packages/r-threejs/package.py
Normal file
@ -0,0 +1,47 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RThreejs(Package):
|
||||||
|
"""Create interactive 3D scatter plots, network plots, and globes using the
|
||||||
|
'three.js' visualization library ("http://threejs.org")."""
|
||||||
|
|
||||||
|
homepage = "http://bwlewis.github.io/rthreejs"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/threejs_0.2.2.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/threejs"
|
||||||
|
|
||||||
|
version('0.2.2', '35c179b10813c5e4bd3e7827fae6627b')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-htmlwidgets', type=nolink)
|
||||||
|
depends_on('r-base64enc', type=nolink)
|
||||||
|
depends_on('r-matrix', type=nolink)
|
||||||
|
depends_on('r-jsonlite', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
47
var/spack/repos/builtin/packages/r-visnetwork/package.py
Normal file
47
var/spack/repos/builtin/packages/r-visnetwork/package.py
Normal file
@ -0,0 +1,47 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RVisnetwork(Package):
|
||||||
|
"""Provides an R interface to the 'vis.js' JavaScript charting library. It
|
||||||
|
allows an interactive visualization of networks."""
|
||||||
|
|
||||||
|
homepage = "https://github.com/datastorm-open/visNetwork"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/visNetwork_1.0.1.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/visNetwork"
|
||||||
|
|
||||||
|
version('1.0.1', 'dfc9664a5165134d8dbdcd949ad73cf7')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-htmlwidgets', type=nolink)
|
||||||
|
depends_on('r-htmltools', type=nolink)
|
||||||
|
depends_on('r-jsonlite', type=nolink)
|
||||||
|
depends_on('r-magrittr', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
46
var/spack/repos/builtin/packages/r-xts/package.py
Normal file
46
var/spack/repos/builtin/packages/r-xts/package.py
Normal file
@ -0,0 +1,46 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RXts(Package):
|
||||||
|
"""Provide for uniform handling of R's different time-based data classes by
|
||||||
|
extending zoo, maximizing native format information preservation and
|
||||||
|
allowing for user level customization and extension, while simplifying
|
||||||
|
cross-class interoperability."""
|
||||||
|
|
||||||
|
homepage = "http://r-forge.r-project.org/projects/xts/"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/xts_0.9-7.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/xts"
|
||||||
|
|
||||||
|
version('0.9-7', 'a232e94aebfa654653a7d88a0503537b')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-zoo', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
42
var/spack/repos/builtin/packages/r-yaml/package.py
Normal file
42
var/spack/repos/builtin/packages/r-yaml/package.py
Normal file
@ -0,0 +1,42 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RYaml(Package):
|
||||||
|
"""This package implements the libyaml YAML 1.1 parser and emitter
|
||||||
|
(http://pyyaml.org/wiki/LibYAML) for R."""
|
||||||
|
|
||||||
|
homepage = "https://cran.r-project.org/web/packages/yaml/index.html"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/yaml_2.1.13.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/yaml"
|
||||||
|
|
||||||
|
version('2.1.13', 'f2203ea395adaff6bd09134666191d9a')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
47
var/spack/repos/builtin/packages/r-zoo/package.py
Normal file
47
var/spack/repos/builtin/packages/r-zoo/package.py
Normal file
@ -0,0 +1,47 @@
|
|||||||
|
##############################################################################
|
||||||
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||||
|
# Produced at the Lawrence Livermore National Laboratory.
|
||||||
|
#
|
||||||
|
# This file is part of Spack.
|
||||||
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||||
|
# LLNL-CODE-647188
|
||||||
|
#
|
||||||
|
# For details, see https://github.com/llnl/spack
|
||||||
|
# Please also see the LICENSE file for our notice and the LGPL.
|
||||||
|
#
|
||||||
|
# This program is free software; you can redistribute it and/or modify
|
||||||
|
# it under the terms of the GNU Lesser General Public License (as
|
||||||
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||||
|
#
|
||||||
|
# This program is distributed in the hope that it will be useful, but
|
||||||
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||||
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||||
|
# conditions of the GNU Lesser General Public License for more details.
|
||||||
|
#
|
||||||
|
# You should have received a copy of the GNU Lesser General Public
|
||||||
|
# License along with this program; if not, write to the Free Software
|
||||||
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||||
|
##############################################################################
|
||||||
|
from spack import *
|
||||||
|
|
||||||
|
|
||||||
|
class RZoo(Package):
|
||||||
|
"""An S3 class with methods for totally ordered indexed observations. It is
|
||||||
|
particularly aimed at irregular time series of numeric vectors/matrices and
|
||||||
|
factors. zoo's key design goals are independence of a particular
|
||||||
|
index/date/time class and consistency with ts and base R by providing
|
||||||
|
methods to extend standard generics."""
|
||||||
|
|
||||||
|
homepage = "http://zoo.r-forge.r-project.org/"
|
||||||
|
url = "https://cran.r-project.org/src/contrib/zoo_1.7-13.tar.gz"
|
||||||
|
list_url = "https://cran.r-project.org/src/contrib/Archive/zoo"
|
||||||
|
|
||||||
|
version('1.7-13', '99521dfa4c668e692720cefcc5a1bf30')
|
||||||
|
|
||||||
|
extends('R')
|
||||||
|
|
||||||
|
depends_on('r-lattice', type=nolink)
|
||||||
|
|
||||||
|
def install(self, spec, prefix):
|
||||||
|
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
|
||||||
|
self.stage.source_path)
|
||||||
Loading…
Reference in New Issue
Block a user