Feature/methycode (#5374)

* methylcode: added package

* pyfasta: added package

* py-bsddb3: added package

* py-bsddb3: added package

* Update package.py

* Update package.py

* Update package.py

* removed fixme comments

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Update package.py

var/spack/repos/builtin/packages/py-pyfasta/package.py

@@ -0,0 +1,39 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PyPyfasta(PythonPackage):
+    """Pyfasta: fast, memory-efficient, pythonic (and command-line)
+       access to fasta sequence files"""
+
+    homepage = "https://pypi.python.org/pypi/pyfasta/"
+    url      = "https://pypi.python.org/packages/be/3f/794fbcdaaa2113f0a1d16a962463896c1a6bdab77bd63f33a8f16aae6cdc/pyfasta-0.5.2.tar.gz"
+
+    version('0.5.2', 'bf61ab997dca329675c3eb2ee7cdfcf2')
+
+    depends_on('python@2.6:')
+    depends_on('py-setuptools')
+    depends_on('py-numpy')