zhangyiss/spack
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

py-nibetaseries: add new package (#27187)

Browse Source
This commit is contained in:
Manuela Kuhn 2021-11-03 16:26:30 +01:00 committed by GitHub
parent 67cd92e6a3
commit 5c13c5892b
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23
1 changed files with 59 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

59
var/spack/repos/builtin/packages/py-nibetaseries/package.py Normal file
View File

@ -0,0 +1,59 @@
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyNibetaseries(PythonPackage):
"""BetaSeries Correlations implemented in Nipype."""
homepage = "https://github.com/HBClab/NiBetaSeries"
pypi = "nibetaseries/nibetaseries-0.6.0.tar.gz"
git = "https://github.com/HBClab/NiBetaSeries.git"
version('master', branch='master')
version('0.6.0', sha256='afddea1bf9b9de4ae446a5d9d2a56bdc88a5a9588bec5ecd3c8ac978fe416515')
depends_on('python@3.5:', type=('build', 'run'))
depends_on('py-setuptools@40.8:', type='build')
depends_on('py-cython', type='build')
with when('@master'):
depends_on('py-nipype@1.5.1:', type=('build', 'run'))
depends_on('py-pybids@0.11.1:', type=('build', 'run'))
depends_on('py-nibabel@3:', type=('build', 'run'))
depends_on('py-nistats@0.0.1b2', type=('build', 'run'))
depends_on('py-niworkflows@1.3.1:1.3', type=('build', 'run'))
depends_on('py-nilearn', type=('build', 'run'))
depends_on('py-pandas', type=('build', 'run'))
depends_on('py-numpy', type=('build', 'run'))
depends_on('py-duecredit', type=('build', 'run'))
depends_on('py-scikit-learn@0.22.0:0.22', type=('build', 'run'))
depends_on('py-matplotlib', type=('build', 'run'))
depends_on('py-mne', type=('build', 'run'))
# pypiwin32; platform_system=="Windows"
with when('@:0.6'):
depends_on('py-nipype@1.4.2:1.4', type=('build', 'run'))
depends_on('py-pybids@0.9.3:0.9', type=('build', 'run'))
depends_on('py-nibabel@2.4.0:2.4', type=('build', 'run'))
depends_on('py-nistats@0.0.1b2', type=('build', 'run'))
depends_on('py-nilearn@0.4.2:0.4', type=('build', 'run'))
depends_on('py-pandas@0.24.0:0.24', type=('build', 'run'))
depends_on('py-numpy', type=('build', 'run'))
depends_on('py-niworkflows@1.0.2:1.0', type=('build', 'run'))
depends_on('py-duecredit@0.6.4:0.6', type=('build', 'run'))
depends_on('py-scikit-learn@0.19.2:0.19', type=('build', 'run'))
depends_on('py-matplotlib@2.2.4:2.2', type=('build', 'run'))
depends_on('py-mne@0.18.1:0.18', type=('build', 'run'))
# pypiwin32; platform_system=="Windows"
@run_after('install')
def patch_bin(self):
# pkg_resources fails to find the dependencies, resulting in errors
# like: pkg_resources.DistributionNotFound: The 'sklearn' distribution
# was not found and is required by nilearn
filter_file("__requires__ = 'nibetaseries==0.post1+gaa7d2ea'", "",
join_path(self.prefix.bin, 'nibs'), string=True)