Merge branch 'develop' into features/shared to support Spack 0.13.3
This commit is contained in:
Carson Woods
@@ -19,6 +19,9 @@ class HashTest1(Package):
|
||||
version('1.2', 'b' * 32)
|
||||
version('1.3', 'c' * 32)
|
||||
version('1.4', 'd' * 32)
|
||||
version('1.5', 'd' * 32)
|
||||
version('1.6', 'e' * 32)
|
||||
version('1.7', 'f' * 32)
|
||||
|
||||
patch('patch1.patch', when="@1.1")
|
||||
patch('patch2.patch', when="@1.4")
|
||||
@@ -34,6 +37,10 @@ def install(self, spec, prefix):
|
||||
print("install 1")
|
||||
os.listdir(os.getcwd())
|
||||
|
||||
@when('@1.5')
|
||||
@when('@1.5:')
|
||||
def install(self, spec, prefix):
|
||||
os.listdir(os.getcwd())
|
||||
|
||||
@when('@1.5,1.6')
|
||||
def extra_phase(self, spec, prefix):
|
||||
pass
|
||||
|
||||
42
var/spack/repos/builtin.mock/packages/hash-test3/package.py
Normal file
42
var/spack/repos/builtin.mock/packages/hash-test3/package.py
Normal file
@@ -0,0 +1,42 @@
|
||||
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
from spack import *
|
||||
|
||||
import os
|
||||
|
||||
|
||||
class HashTest3(Package):
|
||||
"""Used to test package hashing
|
||||
"""
|
||||
|
||||
homepage = "http://www.hashtest3.org"
|
||||
url = "http://www.hashtest1.org/downloads/hashtest3-1.1.tar.bz2"
|
||||
|
||||
version('1.2', 'b' * 32)
|
||||
version('1.3', 'c' * 32)
|
||||
version('1.5', 'd' * 32)
|
||||
version('1.6', 'e' * 32)
|
||||
version('1.7', 'f' * 32)
|
||||
|
||||
variant('variantx', default=False, description='Test variant X')
|
||||
variant('varianty', default=False, description='Test variant Y')
|
||||
|
||||
def setup_dependent_environment(self, spack_env, run_env, dependent_spec):
|
||||
pass
|
||||
|
||||
@when('@:1.4')
|
||||
def install(self, spec, prefix):
|
||||
print("install 1")
|
||||
os.listdir(os.getcwd())
|
||||
|
||||
@when('@1.5:')
|
||||
def install(self, spec, prefix):
|
||||
os.listdir(os.getcwd())
|
||||
|
||||
for _version_constraint in ['@1.5', '@1.6']:
|
||||
@when(_version_constraint)
|
||||
def extra_phase(self, spec, prefix):
|
||||
pass
|
||||
@@ -0,0 +1,21 @@
|
||||
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
from spack import *
|
||||
|
||||
|
||||
class MissingDependency(Package):
|
||||
"""Package with a dependency that does not exist."""
|
||||
|
||||
homepage = "http://www.example.com"
|
||||
url = "http://www.example.com/missing-dependency-1.0.tar.gz"
|
||||
|
||||
version('1.0', '0123456789abcdef0123456789abcdef')
|
||||
|
||||
# intentionally missing to test possible_dependencies()
|
||||
depends_on("this-is-a-missing-dependency")
|
||||
|
||||
# this one is a "real" mock dependency
|
||||
depends_on("a")
|
||||
@@ -14,5 +14,5 @@ class NoversionBundle(BundlePackage):
|
||||
"""
|
||||
|
||||
homepage = "http://www.example.com"
|
||||
|
||||
url = "http://www.example.com/a-1.0.tar.gz"
|
||||
depends_on('dependency-install')
|
||||
|
||||
1
var/spack/repos/builtin.mock/packages/patch/biz.patch
Normal file
1
var/spack/repos/builtin.mock/packages/patch/biz.patch
Normal file
@@ -0,0 +1 @@
|
||||
this patch is never applied, it is used to check spec semantics on when the concretizer chooses to include a patch
|
||||
@@ -13,11 +13,14 @@ class Patch(Package):
|
||||
url = "http://www.example.com/patch-1.0.tar.gz"
|
||||
|
||||
version('1.0', '0123456789abcdef0123456789abcdef')
|
||||
version('1.0.1')
|
||||
version('1.0.2')
|
||||
version('2.0', '0123456789abcdef0123456789abcdef')
|
||||
|
||||
patch('foo.patch')
|
||||
patch('bar.patch', when='@2:')
|
||||
patch('baz.patch')
|
||||
patch('biz.patch', when='@1.0.1:1.0.2')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
pass
|
||||
|
||||
23
var/spack/repos/builtin/packages/abseil-cpp/package.py
Normal file
23
var/spack/repos/builtin/packages/abseil-cpp/package.py
Normal file
@@ -0,0 +1,23 @@
|
||||
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
from spack import *
|
||||
|
||||
|
||||
class AbseilCpp(CMakePackage):
|
||||
"""Abseil Common Libraries (C++) """
|
||||
|
||||
homepage = "https://abseil.io/"
|
||||
url = "https://github.com/abseil/abseil-cpp/archive/20180600.tar.gz"
|
||||
|
||||
maintainers = ['jcftang']
|
||||
|
||||
version('20190808', sha256='8100085dada279bf3ee00cd064d43b5f55e5d913be0dfe2906f06f8f28d5b37e')
|
||||
version('20181200', sha256='e2b53bfb685f5d4130b84c4f3050c81bf48c497614dc85d91dbd3ed9129bce6d')
|
||||
version('20180600', sha256='794d483dd9a19c43dc1fbbe284ce8956eb7f2600ef350dac4c602f9b4eb26e90')
|
||||
|
||||
def cmake_args(self):
|
||||
args = ["-DBUILD_TESTING=OFF", "-DCMAKE_CXX_STANDARD=11"]
|
||||
return args
|
||||
@@ -0,0 +1,11 @@
|
||||
--- spack-src/include/parUtils.txx.org 2019-11-27 16:41:07.438799437 +0900
|
||||
+++ spack-src/include/parUtils.txx 2019-11-27 16:54:51.654921619 +0900
|
||||
@@ -70,7 +70,7 @@
|
||||
}
|
||||
omp_par::scan(&s_cnt[0],&s_dsp[0],np+1);
|
||||
|
||||
- size_t range[2]={0,np};
|
||||
+ size_t range[2]={0,(unsigned long)np};
|
||||
for(size_t np_new=np; np_new>1; np_new/=kway){
|
||||
double tt=omp_get_wtime();
|
||||
if(kway>np_new) kway=np_new;
|
||||
@@ -24,6 +24,9 @@ class Accfft(CMakePackage, CudaPackage):
|
||||
|
||||
depends_on('parallel-netcdf', when='+pnetcdf')
|
||||
|
||||
# fix error [-Wc++11-narrowing]
|
||||
patch('fix_narrowing_error.patch')
|
||||
|
||||
parallel = False
|
||||
|
||||
def cmake_args(self):
|
||||
|
||||
@@ -25,11 +25,13 @@ class Ack(Package):
|
||||
|
||||
def install(self, spec, prefix):
|
||||
mkdirp(prefix.bin)
|
||||
ack = 'ack-{0}-single-file'.format(self.version)
|
||||
ack_source = 'ack-{0}-single-file'.format(self.version)
|
||||
ack_installed = join_path(prefix.bin, "ack")
|
||||
|
||||
# install source
|
||||
install(ack_source, ack_installed)
|
||||
set_executable(ack_installed)
|
||||
|
||||
# rewrite the script's #! line to call the perl dependency
|
||||
shbang = '#!' + spec['perl'].command.path
|
||||
filter_file(r'^#!/usr/bin/env perl', shbang, ack)
|
||||
|
||||
install(ack, join_path(prefix.bin, "ack"))
|
||||
set_executable(join_path(prefix.bin, "ack"))
|
||||
filter_file(r'^#!/usr/bin/env perl', shbang, ack_installed)
|
||||
|
||||
21
var/spack/repos/builtin/packages/activemq/package.py
Normal file
21
var/spack/repos/builtin/packages/activemq/package.py
Normal file
@@ -0,0 +1,21 @@
|
||||
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
from spack import *
|
||||
|
||||
|
||||
class Activemq(Package):
|
||||
"""
|
||||
Apache ActiveMQ is a high performance Apache 2.0 licensed Message Broker
|
||||
and JMS 1.1 implementation.
|
||||
"""
|
||||
|
||||
homepage = "https://archive.apache.org/dist/activemq"
|
||||
url = "https://archive.apache.org/dist/activemq/5.14.0/apache-activemq-5.14.0-bin.tar.gz"
|
||||
|
||||
version('5.14.0', sha256='81c623465af277dd50a141a8d9308d6ec8e1b78d9019b845873dc12d117aa9a6')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
install_tree('.', prefix)
|
||||
@@ -31,8 +31,14 @@ class ActsCore(CMakePackage):
|
||||
|
||||
homepage = "http://acts.web.cern.ch/ACTS/"
|
||||
git = "https://gitlab.cern.ch/acts/acts-core.git"
|
||||
maintainers = ['HadrienG2']
|
||||
|
||||
version('develop', branch='master')
|
||||
version('0.13.0', commit='b33f7270ddbbb33050b7ec60b4fa255dc2bfdc88')
|
||||
version('0.12.1', commit='a8b3d36e7c6cb86487637589e0eff7bbe626054a')
|
||||
version('0.12.0', commit='f9cda77299606d78c889fb1db2576c1971a271c4')
|
||||
version('0.11.1', commit='c21196cd6c3ecc6da0f14d0a9ef227a274be584b')
|
||||
version('0.11.0', commit='22bcea1f19adb0021ca61b843b95cfd2462dd31d')
|
||||
version('0.10.5', commit='b6f7234ca8f18ee11e57709d019c14bf41cf9b19')
|
||||
version('0.10.4', commit='42cbc359c209f5cf386e620b5a497192c024655e')
|
||||
version('0.10.3', commit='a3bb86b79a65b3d2ceb962b60411fd0df4cf274c')
|
||||
@@ -84,7 +90,7 @@ def cmake_variant(cmake_label, spack_variant):
|
||||
cmake_variant("INTEGRATION_TESTS", "integration_tests"),
|
||||
cmake_variant("DIGITIZATION_PLUGIN", "digitization"),
|
||||
cmake_variant("DD4HEP_PLUGIN", "dd4hep"),
|
||||
cmake_variant("IDENTIFICATION", "identification"),
|
||||
cmake_variant("IDENTIFICATION_PLUGIN", "identification"),
|
||||
cmake_variant("JSON_PLUGIN", "json"),
|
||||
cmake_variant("TGEO_PLUGIN", "tgeo")
|
||||
]
|
||||
|
||||
@@ -0,0 +1,213 @@
|
||||
From 2f05a0b1def194001d1f6e0f9a07725c10b48301 Mon Sep 17 00:00:00 2001
|
||||
From: Greg Eisenhauer <eisen@cc.gatech.edu>
|
||||
Date: Fri, 13 Dec 2019 10:00:15 -0500
|
||||
Subject: [PATCH] Merge branch 'upstream-dill' into DillUpstream
|
||||
|
||||
* upstream-dill:
|
||||
dill 2019-12-12 (dac6dfcc)
|
||||
---
|
||||
thirdparty/dill/dill/CMakeLists.txt | 5 ++++-
|
||||
thirdparty/dill/dill/LICENSE | 24 ++++++++++++++++++++++++
|
||||
thirdparty/dill/dill/arm6.c | 19 +++----------------
|
||||
thirdparty/dill/dill/arm6_rt.c | 19 +++----------------
|
||||
thirdparty/dill/dill/arm8.c | 19 +++----------------
|
||||
thirdparty/dill/dill/arm8_rt.c | 19 +++----------------
|
||||
thirdparty/dill/dill/config.h.cmake | 7 +++++--
|
||||
7 files changed, 45 insertions(+), 67 deletions(-)
|
||||
create mode 100644 thirdparty/dill/dill/LICENSE
|
||||
|
||||
diff --git a/thirdparty/dill/dill/CMakeLists.txt b/thirdparty/dill/dill/CMakeLists.txt
|
||||
index 0461556a..695db8c6 100644
|
||||
--- a/thirdparty/dill/dill/CMakeLists.txt
|
||||
+++ b/thirdparty/dill/dill/CMakeLists.txt
|
||||
@@ -1,6 +1,6 @@
|
||||
cmake_minimum_required(VERSION 3.0)
|
||||
|
||||
-project(DILL VERSION 2.4.0 LANGUAGES C CXX)
|
||||
+project(DILL VERSION 2.4.1 LANGUAGES C CXX)
|
||||
|
||||
# Some boilerplate to setup nice output directories
|
||||
include(GNUInstallDirs)
|
||||
@@ -265,6 +265,9 @@ check_include_files(unistd.h HAVE_UNISTD_H)
|
||||
check_include_files(stdarg.h STDC_HEADERS)
|
||||
check_include_files(malloc.h HAVE_MALLOC_H)
|
||||
check_include_files(memory.h HAVE_MEMORY_H)
|
||||
+include(CheckSymbolExists)
|
||||
+check_symbol_exists(__clear_cache "" CLEAR_CACHE_DEFINED)
|
||||
+message(STATUS "Clear cache defined is ${CLEAR_CACHE_DEFINED}")
|
||||
|
||||
set(NO_DISASSEMBLER TRUE)
|
||||
if(DILL_ENABLE_DISASSEMBLY)
|
||||
diff --git a/thirdparty/dill/dill/LICENSE b/thirdparty/dill/dill/LICENSE
|
||||
new file mode 100644
|
||||
index 00000000..81b08341
|
||||
--- /dev/null
|
||||
+++ b/thirdparty/dill/dill/LICENSE
|
||||
@@ -0,0 +1,24 @@
|
||||
+Copyright (c) 2010, Georgia Tech Research Corporation
|
||||
+All rights reserved.
|
||||
+
|
||||
+Redistribution and use in source and binary forms, with or without
|
||||
+modification, are permitted provided that the following conditions are met:
|
||||
+ * Redistributions of source code must retain the above copyright
|
||||
+ notice, this list of conditions and the following disclaimer.
|
||||
+ * Redistributions in binary form must reproduce the above copyright
|
||||
+ notice, this list of conditions and the following disclaimer in the
|
||||
+ documentation and/or other materials provided with the distribution.
|
||||
+ * Neither the name of the Georgia Tech Research Corporation nor the
|
||||
+ names of its contributors may be used to endorse or promote products
|
||||
+ derived from this software without specific prior written permission.
|
||||
+
|
||||
+THIS SOFTWARE IS PROVIDED BY GEORGIA TECH RESEARCH CORPORATION ''AS IS'' AND
|
||||
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
|
||||
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
|
||||
+DISCLAIMED. IN NO EVENT SHALL GEORGIA TECH BE LIABLE FOR ANY DIRECT, INDIRECT,
|
||||
+INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
|
||||
+LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA,
|
||||
+OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
|
||||
+LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
|
||||
+OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
|
||||
+ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
|
||||
diff --git a/thirdparty/dill/dill/arm6.c b/thirdparty/dill/dill/arm6.c
|
||||
index f2be1725..da90507c 100644
|
||||
--- a/thirdparty/dill/dill/arm6.c
|
||||
+++ b/thirdparty/dill/dill/arm6.c
|
||||
@@ -1526,22 +1526,9 @@ arm6_call_link(dill_stream s)
|
||||
}
|
||||
|
||||
|
||||
-/* Clear the instruction cache from `beg' to `end'. This makes an
|
||||
- inline system call to SYS_cacheflush. */
|
||||
-#define CLEAR_INSN_CACHE(BEG, END) \
|
||||
-{ \
|
||||
- register unsigned long _beg __asm ("a1") = (unsigned long) (BEG); \
|
||||
- register unsigned long _end __asm ("a2") = (unsigned long) (END); \
|
||||
- register unsigned long _flg __asm ("a3") = 0; \
|
||||
- __asm __volatile ("swi 0x9f0002 @ sys_cacheflush" \
|
||||
- : "=r" (_beg) \
|
||||
- : "0" (_beg), "r" (_end), "r" (_flg)); \
|
||||
-}
|
||||
-/*
|
||||
- * Cache flush code grabbed from a Dec 1999 posting on libc-hacker
|
||||
- * mailing list
|
||||
- */
|
||||
-extern void __clear_cache(char*, char *);
|
||||
+#ifndef CLEAR_CACHE_DEFINED
|
||||
+extern void __clear_cache(void *, void *);
|
||||
+#endif
|
||||
|
||||
static void
|
||||
arm6_flush(void *base, void *limit)
|
||||
diff --git a/thirdparty/dill/dill/arm6_rt.c b/thirdparty/dill/dill/arm6_rt.c
|
||||
index 1f64b477..6b7e908e 100644
|
||||
--- a/thirdparty/dill/dill/arm6_rt.c
|
||||
+++ b/thirdparty/dill/dill/arm6_rt.c
|
||||
@@ -109,22 +109,9 @@ arm6_rt_call_link(char *code, call_t *t)
|
||||
}
|
||||
}
|
||||
|
||||
-/* Clear the instruction cache from `beg' to `end'. This makes an
|
||||
- inline system call to SYS_cacheflush. */
|
||||
-#define CLEAR_INSN_CACHE(BEG, END) \
|
||||
-{ \
|
||||
- register unsigned long _beg __asm ("a1") = (unsigned long) (BEG); \
|
||||
- register unsigned long _end __asm ("a2") = (unsigned long) (END); \
|
||||
- register unsigned long _flg __asm ("a3") = 0; \
|
||||
- __asm __volatile ("swi 0x9f0002 @ sys_cacheflush" \
|
||||
- : "=r" (_beg) \
|
||||
- : "0" (_beg), "r" (_end), "r" (_flg)); \
|
||||
-}
|
||||
-/*
|
||||
- * Cache flush code grabbed from a Dec 1999 posting on libc-hacker
|
||||
- * mailing list
|
||||
- */
|
||||
-extern void __clear_cache(char*, char *);
|
||||
+#ifndef CLEAR_CACHE_DEFINED
|
||||
+extern void __clear_cache(void *, void *);
|
||||
+#endif
|
||||
|
||||
static void
|
||||
arm6_flush(void *base, void *limit)
|
||||
diff --git a/thirdparty/dill/dill/arm8.c b/thirdparty/dill/dill/arm8.c
|
||||
index fd5ed79f..d1894635 100644
|
||||
--- a/thirdparty/dill/dill/arm8.c
|
||||
+++ b/thirdparty/dill/dill/arm8.c
|
||||
@@ -1524,22 +1524,9 @@ arm8_call_link(dill_stream s)
|
||||
}
|
||||
|
||||
|
||||
-/* Clear the instruction cache from `beg' to `end'. This makes an
|
||||
- inline system call to SYS_cacheflush. */
|
||||
-#define CLEAR_INSN_CACHE(BEG, END) \
|
||||
-{ \
|
||||
- register unsigned long _beg __asm ("a1") = (unsigned long) (BEG); \
|
||||
- register unsigned long _end __asm ("a2") = (unsigned long) (END); \
|
||||
- register unsigned long _flg __asm ("a3") = 0; \
|
||||
- __asm __volatile ("swi 0x9f0002 @ sys_cacheflush" \
|
||||
- : "=r" (_beg) \
|
||||
- : "0" (_beg), "r" (_end), "r" (_flg)); \
|
||||
-}
|
||||
-/*
|
||||
- * Cache flush code grabbed from a Dec 1999 posting on libc-hacker
|
||||
- * mailing list
|
||||
- */
|
||||
-extern void __clear_cache(char*, char *);
|
||||
+#ifndef CLEAR_CACHE_DEFINED
|
||||
+extern void __clear_cache(void *, void *);
|
||||
+#endif
|
||||
|
||||
static void
|
||||
arm8_flush(void *base, void *limit)
|
||||
diff --git a/thirdparty/dill/dill/arm8_rt.c b/thirdparty/dill/dill/arm8_rt.c
|
||||
index bd0209cd..5cb107ed 100644
|
||||
--- a/thirdparty/dill/dill/arm8_rt.c
|
||||
+++ b/thirdparty/dill/dill/arm8_rt.c
|
||||
@@ -109,22 +109,9 @@ arm8_rt_call_link(char *code, call_t *t)
|
||||
}
|
||||
}
|
||||
|
||||
-/* Clear the instruction cache from `beg' to `end'. This makes an
|
||||
- inline system call to SYS_cacheflush. */
|
||||
-#define CLEAR_INSN_CACHE(BEG, END) \
|
||||
-{ \
|
||||
- register unsigned long _beg __asm ("a1") = (unsigned long) (BEG); \
|
||||
- register unsigned long _end __asm ("a2") = (unsigned long) (END); \
|
||||
- register unsigned long _flg __asm ("a3") = 0; \
|
||||
- __asm __volatile ("swi 0x9f0002 @ sys_cacheflush" \
|
||||
- : "=r" (_beg) \
|
||||
- : "0" (_beg), "r" (_end), "r" (_flg)); \
|
||||
-}
|
||||
-/*
|
||||
- * Cache flush code grabbed from a Dec 1999 posting on libc-hacker
|
||||
- * mailing list
|
||||
- */
|
||||
-extern void __clear_cache(char*, char *);
|
||||
+#ifndef CLEAR_CACHE_DEFINED
|
||||
+extern void __clear_cache(void *, void *);
|
||||
+#endif
|
||||
|
||||
static void
|
||||
arm8_flush(void *base, void *limit)
|
||||
diff --git a/thirdparty/dill/dill/config.h.cmake b/thirdparty/dill/dill/config.h.cmake
|
||||
index a8519064..a9622f56 100644
|
||||
--- a/thirdparty/dill/dill/config.h.cmake
|
||||
+++ b/thirdparty/dill/dill/config.h.cmake
|
||||
@@ -16,10 +16,13 @@
|
||||
#cmakedefine HAVE_DIS_ASM_H
|
||||
|
||||
/* Define to 1 if you have the <dlfcn.h> header file. */
|
||||
-#undef HAVE_DLFCN_H
|
||||
+#cmakedefine HAVE_DLFCN_H
|
||||
|
||||
/* Define to 1 if you have the <inttypes.h> header file. */
|
||||
-#undef HAVE_INTTYPES_H
|
||||
+#cmakedefine HAVE_INTTYPES_H
|
||||
+
|
||||
+/* Define to 1 if you have __clear_cache is defined */
|
||||
+#cmakedefine CLEAR_CACHE_DEFINED
|
||||
|
||||
/* Define to 1 if you have the <malloc.h> header file. */
|
||||
#cmakedefine HAVE_MALLOC_H
|
||||
--
|
||||
2.18.1
|
||||
|
||||
@@ -109,6 +109,11 @@ class Adios2(CMakePackage):
|
||||
# See https://github.com/ornladios/ADIOS2/pull/1632
|
||||
patch('cmake-update-findmpi.patch', when='@2.4.0')
|
||||
|
||||
# Fix the signature of the builtin clear_cache function in the
|
||||
# third-party dill library.
|
||||
# See https://github.com/ornladios/ADIOS2/pull/1899
|
||||
patch('2.5-fix-clear_cache.patch', when='@2.5.0')
|
||||
|
||||
def cmake_args(self):
|
||||
spec = self.spec
|
||||
|
||||
|
||||
23
var/spack/repos/builtin/packages/alluxio/package.py
Normal file
23
var/spack/repos/builtin/packages/alluxio/package.py
Normal file
@@ -0,0 +1,23 @@
|
||||
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
from spack import *
|
||||
|
||||
|
||||
class Alluxio(Package):
|
||||
"""
|
||||
Alluxio (formerly known as Tachyon) is a virtual distributed storage
|
||||
system. It bridges the gap between computation frameworks and storage
|
||||
systems, enabling computation applications to connect to numerous
|
||||
storage systems through a common interface.
|
||||
"""
|
||||
|
||||
homepage = "https://github.com/Alluxio/alluxio"
|
||||
url = "https://github.com/Alluxio/alluxio/archive/v2.1.0.tar.gz"
|
||||
|
||||
version('2.1.0', sha256='c8b5b7848488e0ac10b093eea02ef05fa822250669d184291cc51b2f8aac253e')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
install_tree('.', prefix)
|
||||
@@ -5,6 +5,7 @@
|
||||
|
||||
from spack import *
|
||||
import os
|
||||
import shutil
|
||||
|
||||
|
||||
class Amber(Package, CudaPackage):
|
||||
@@ -17,63 +18,171 @@ class Amber(Package, CudaPackage):
|
||||
http://spack.readthedocs.io/en/latest/mirrors.html"""
|
||||
|
||||
homepage = "http://ambermd.org/"
|
||||
url = "file://{0}/Amber16.tar.bz2".format(os.getcwd())
|
||||
url = "file://{0}/Amber18.tar.bz2".format(os.getcwd())
|
||||
maintainers = ['hseara']
|
||||
|
||||
version('18', sha256='2060897c0b11576082d523fb63a51ba701bc7519ff7be3d299d5ec56e8e6e277')
|
||||
version('16', sha256='3b7ef281fd3c46282a51b6a6deed9ed174a1f6d468002649d84bfc8a2577ae5d')
|
||||
|
||||
variant('mpi', description='Build MPI executables', default=True)
|
||||
resources = [
|
||||
# [version amber, version ambertools , sha256sum]
|
||||
('18', '19', '0c86937904854b64e4831e047851f504ec45b42e593db4ded92c1bee5973e699'),
|
||||
('16', '16', '7b876afe566e9dd7eb6a5aa952a955649044360f15c1f5d4d91ba7f41f3105fa'),
|
||||
]
|
||||
for ver, ambertools_ver, checksum in resources:
|
||||
resource(when='@{0}'.format(ver),
|
||||
name='AmberTools',
|
||||
url='file://{0}/AmberTools{1}.tar.bz2'.format(os.getcwd(),
|
||||
ambertools_ver),
|
||||
sha256=checksum,
|
||||
destination='',
|
||||
placement='ambertools_tmpdir',
|
||||
)
|
||||
|
||||
resource(
|
||||
name='AmberTools',
|
||||
sha256='7b876afe566e9dd7eb6a5aa952a955649044360f15c1f5d4d91ba7f41f3105fa',
|
||||
url='file://{0}/AmberTools16.tar.bz2'.format(os.getcwd()),
|
||||
destination='.',
|
||||
)
|
||||
patches = [
|
||||
('18', '1', '3cefac9a24ece99176d5d2d58fea2722de3e235be5138a128428b9260fe922ad'),
|
||||
('18', '2', '3a0707a9a59dcbffa765dcf87b68001450095c51b96ec39d21260ba548a2f66a'),
|
||||
('18', '3', '24c2e06f71ae553a408caa3f722254db2cbf1ca4db274542302184e3d6ca7015'),
|
||||
('18', '4', '51de613e8fda20cc92979265cf7179288df8c1af4202f02794ad7327fda2657b'),
|
||||
('18', '5', 'c70354bfa312603e4819efce11a242ddcc3830895453d9424f0c83f7ae98bc5b'),
|
||||
('18', '6', '3450433a8697b27e43172043be68d31515a7c7c00b2b248f84043dd70a2f59a8'),
|
||||
('18', '7', '10ba41422b7a3eb5b32bc6453231100544cf620c764ab8332c629a3b9fc749d4'),
|
||||
('18', '8', '73968dc0fd99bcbd5eae2223bd54f414879c062ac933948ba6b8b67383dc6a53'),
|
||||
('18', '9', 'e7d72fa31560f1e8ea572b8c73259d9fe512f56fbeb1b58ae014c43b9b5b6290'),
|
||||
('18', '10', '1bee419a3b0b686a729aa12515b0f96a9a8f43478ca2c01ea1661cc1698c6266'),
|
||||
('18', '11', '926557f0c137ea8dbf99a0487b25e131b12dfd39977d3e515f01f49187e6a09c'),
|
||||
('18', '12', '7e2645d539d257f7064808308048622818c9083dedfa4ac0a958cd15181231ac'),
|
||||
('18', '13', '95d2e33d0d05b8f9b6d8091d1c804271ec3a69e9aef792cc3b1ab8a2165eca3e'),
|
||||
('18', '14', 'a1adfb072f60ffcb67adb589df7c5578629441bee4ccb89ab635a6e8d7a35277'),
|
||||
('18', '15', '4deb3df329c05729561dcc7310e49059eaddc504c4210ad31fad11dc70f61742'),
|
||||
('18', '16', 'cf02f9b949127363bad1aa700ab662a3c7cf9ce0e2e4750e066d2204b9500a99'),
|
||||
('18', '17', '480300f949e0dd6402051810a9714adb388cf96e454a55346c76954cdd69413d'),
|
||||
('16', '1.txt', 'c7ef2303bb35131a48e2256c5a3c7b391efa73e2acf757d7e39760efb6320ed4'),
|
||||
('16', '2', 'a4db183f7c337a67f5d6b5015e3ae0af0d0edaa56894f0e9e3469c99708fed1c'),
|
||||
('16', '3', '5b279531c42445c6f58281dd94588460218d2258ec9013c8447f3e2b7b81bf02'),
|
||||
('16', '4', '035bddd63bc9d5fd6de26beab31887e5c14c3caa4958d2424d72f3c49832bd42'),
|
||||
('16', '5', '02d8a1fcb6baa466de4e3683afa48076394acd805f490fbbe50ab19040675136'),
|
||||
('16', '6', '69a3e64d75255d9179c98a2b3a63fe76d5be08c9fc41f27ac197663c97915113'),
|
||||
('16', '7', '0d674c907758e90a168345e6b35b7a0de79c2ead390ab372465a354fcab67d17'),
|
||||
('16', '8', 'd722c0db46af905a5bd13b60e3130c4ddfb0c9da86df0a33253e5f8d53068946'),
|
||||
('16', '9', 'b563e744fbc50c1240d23df369750879df2cec69fba933704b97a73a66d9c4f1'),
|
||||
('16', '10', '99affc65740080b7a1ab87c5c9119bf5be7cf47b2b2d8fc13407d35bd2ba6238'),
|
||||
('16', '11', '86b89dbcae80ef48720fd3c7da88cffbdabfd4021af5a827339b56a33ddae27a'),
|
||||
('16', '12', 'c8d61d1efbd44086f88d74ad9e07dfdc3737dc7053c7d2503131ba0918973a03'),
|
||||
('16', '13', '5ce28e6e0118a4780ad72fc096e617c874cde7d140e15f87451babb25aaf2d8f'),
|
||||
('16', '14', '93703e734e76da30a5e050189a66d5a4d6bec5885752503c4c798e2f44049080'),
|
||||
('16', '15', 'a156ec246cd06688043cefde24de0d715fd46b08f5c0235015c2c5c3c6e37488'),
|
||||
]
|
||||
for ver, num, checksum in patches:
|
||||
patch_url_str = 'https://ambermd.org/bugfixes/{0}.0/update.{1}'
|
||||
patch(patch_url_str.format(ver, num),
|
||||
sha256=checksum, level=0, when='@{0}'.format(ver))
|
||||
|
||||
depends_on('mpi', when='+mpi')
|
||||
depends_on('cuda@7.5.18', when='+cuda')
|
||||
variant('mpi', description='Build MPI executables',
|
||||
default=True)
|
||||
variant('openmp', description='Use OpenMP pragmas to parallelize',
|
||||
default=False)
|
||||
variant('x11', description='Build programs that require X11',
|
||||
default=False)
|
||||
variant('update', description='Update the sources prior compilation',
|
||||
default=False)
|
||||
|
||||
depends_on('netcdf-fortran')
|
||||
depends_on('python+tkinter@2.7:2.8', type=('build', 'run'))
|
||||
depends_on('py-numpy', type=('build', 'run'))
|
||||
depends_on('py-scipy', type=('build', 'run'))
|
||||
depends_on('py-matplotlib@:2.9', type=('build', 'run'))
|
||||
depends_on('zlib')
|
||||
depends_on('flex', type='build')
|
||||
depends_on('bison', type='build')
|
||||
depends_on('netcdf-fortran')
|
||||
# Potential issues with openmpi 4
|
||||
# (http://archive.ambermd.org/201908/0105.html)
|
||||
depends_on('mpi', when='+mpi')
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
sp_dir = join_path(self.prefix, 'python2.7/site-packages')
|
||||
# Cuda dependencies
|
||||
depends_on('cuda@:10.1.243', when='@18:+cuda')
|
||||
depends_on('cuda@7.5.18', when='@:16+cuda')
|
||||
|
||||
run_env.set('AMBERHOME', self.prefix)
|
||||
run_env.prepend_path('PYTHONPATH', sp_dir)
|
||||
# conflicts
|
||||
conflicts('+x11', when='platform=cray',
|
||||
msg='x11 amber applications not available for cray')
|
||||
conflicts('+openmp', when='%clang',
|
||||
msg='openmp optimizations not available for the clang compiler')
|
||||
conflicts('+openmp', when='%pgi',
|
||||
msg='openmp optimizations not available for the pgi compiler')
|
||||
|
||||
def setup_build_environment(self, env):
|
||||
amber_src = self.stage.source_path
|
||||
env.set('AMBERHOME', amber_src)
|
||||
# CUDA
|
||||
if self.spec.satisfies('+cuda'):
|
||||
env.set('CUDA_HOME', self.spec['cuda'].prefix)
|
||||
|
||||
def install(self, spec, prefix):
|
||||
# install AmberTools where it should be
|
||||
install_tree('amber16', '.')
|
||||
# The resource command does not allow us to expand the package in the
|
||||
# root stage folder as required, as it already contains files. Here we
|
||||
# install AmberTools where it should be, which results in 3 copies of
|
||||
# the ambertools (~9 GB). This has to be improved in the future.
|
||||
install_tree('ambertools_tmpdir', '.')
|
||||
shutil.rmtree(join_path(self.stage.source_path, 'ambertools_tmpdir'))
|
||||
|
||||
base_args = [
|
||||
'-noX11',
|
||||
'--no-updates',
|
||||
'--skip-python',
|
||||
'--with-netcdf', self.spec['netcdf-fortran'].prefix
|
||||
]
|
||||
|
||||
configure_env = {
|
||||
'AMBERHOME': self.stage.source_path,
|
||||
'CUDA_HOME': self.spec['cuda'].prefix,
|
||||
}
|
||||
# Select compiler style
|
||||
if self.spec.satisfies('%cce'):
|
||||
compiler = 'cray'
|
||||
elif self.spec.satisfies('%gcc'):
|
||||
compiler = 'gnu'
|
||||
elif self.spec.satisfies('%intel'):
|
||||
compiler = 'intel'
|
||||
elif self.spec.satisfies('%pgi'):
|
||||
compiler = 'pgi'
|
||||
elif self.spec.satisfies('%clang'):
|
||||
compiler = 'clang'
|
||||
else:
|
||||
raise InstallError('Unknown compiler, exiting!!!')
|
||||
|
||||
# Base configuration
|
||||
conf = Executable('./configure')
|
||||
base_args = ['--skip-python',
|
||||
'--with-netcdf', self.spec['netcdf-fortran'].prefix,
|
||||
]
|
||||
if self.spec.satisfies('~x11'):
|
||||
base_args += ['-noX11']
|
||||
|
||||
conf(*(base_args + ['gnu']), extra_env=configure_env)
|
||||
make('install', extra_env=configure_env)
|
||||
# Update the sources: Apply all upstream patches
|
||||
if self.spec.satisfies('+update'):
|
||||
update = Executable('./update_amber')
|
||||
update(*(['--update']))
|
||||
else:
|
||||
base_args += ['--no-updates']
|
||||
|
||||
if '+mpi' in spec:
|
||||
conf(*(base_args + ['-mpi', 'gnu']), extra_env=configure_env)
|
||||
make('install', extra_env=configure_env)
|
||||
# Single core
|
||||
conf(*(base_args + [compiler]))
|
||||
make('install')
|
||||
|
||||
if '+cuda' in spec:
|
||||
conf(*(base_args + ['-cuda', 'gnu']), extra_env=configure_env)
|
||||
make('install', extra_env=configure_env)
|
||||
# CUDA
|
||||
if self.spec.satisfies('+cuda'):
|
||||
conf(*(base_args + ['-cuda', compiler]))
|
||||
make('install')
|
||||
|
||||
# MPI
|
||||
if self.spec.satisfies('+mpi'):
|
||||
conf(*(base_args + ['-mpi', compiler]))
|
||||
make('install')
|
||||
|
||||
# Openmp
|
||||
if self.spec.satisfies('+openmp'):
|
||||
make('clean')
|
||||
conf(*(base_args + ['-openmp', compiler]))
|
||||
make('openmp')
|
||||
|
||||
# CUDA + MPI
|
||||
if self.spec.satisfies('+cuda') and self.spec.satisfies('+mpi'):
|
||||
make('clean')
|
||||
conf(*(base_args + ['-cuda', '-mpi', compiler]))
|
||||
make('install')
|
||||
|
||||
# just install everything that was built
|
||||
install_tree('.', prefix)
|
||||
|
||||
def setup_run_environment(self, env):
|
||||
env.set('AMBER_PREFIX', self.prefix)
|
||||
env.set('AMBERHOME', self.prefix)
|
||||
# CUDA
|
||||
if self.spec.satisfies('+cuda'):
|
||||
env.prepend_path('LD_LIBRARY_PATH', self.spec['cuda'].prefix.lib)
|
||||
|
||||
@@ -79,4 +79,7 @@ def cmake_args(self):
|
||||
'-DENABLE_PARTICLES:BOOL=%s' % self.cmake_is_on('+particles'),
|
||||
'-DENABLE_SUNDIALS:BOOL=%s' % self.cmake_is_on('+sundials')
|
||||
]
|
||||
if self.spec.satisfies('%fj'):
|
||||
args.append('-DCMAKE_Fortran_MODDIR_FLAG=-M')
|
||||
|
||||
return args
|
||||
|
||||
@@ -173,16 +173,16 @@ def edit(self, spec, prefix):
|
||||
with open('GNUmakefile', 'w') as file:
|
||||
file.writelines(contents)
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
def setup_build_environment(self, env):
|
||||
# We don't want an AMREX_HOME the user may have set already
|
||||
spack_env.unset('AMREX_HOME')
|
||||
env.unset('AMREX_HOME')
|
||||
# Help force Amrvis to not pick up random system compilers
|
||||
if '+mpi' in self.spec:
|
||||
spack_env.set('MPI_HOME', self.spec['mpi'].prefix)
|
||||
spack_env.set('CC', self.spec['mpi'].mpicc)
|
||||
spack_env.set('CXX', self.spec['mpi'].mpicxx)
|
||||
spack_env.set('F77', self.spec['mpi'].mpif77)
|
||||
spack_env.set('FC', self.spec['mpi'].mpifc)
|
||||
env.set('MPI_HOME', self.spec['mpi'].prefix)
|
||||
env.set('CC', self.spec['mpi'].mpicc)
|
||||
env.set('CXX', self.spec['mpi'].mpicxx)
|
||||
env.set('F77', self.spec['mpi'].mpif77)
|
||||
env.set('FC', self.spec['mpi'].mpifc)
|
||||
|
||||
def install(self, spec, prefix):
|
||||
# Install exe manually
|
||||
|
||||
@@ -22,8 +22,8 @@ class Angsd(MakefilePackage):
|
||||
depends_on('htslib')
|
||||
conflicts('^htslib@1.6:', when='@0.919')
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
run_env.set('R_LIBS', prefix.R)
|
||||
def setup_run_environment(self, env):
|
||||
env.set('R_LIBS', self.prefix.R)
|
||||
|
||||
def install(self, spec, prefix):
|
||||
mkdirp(prefix.bin)
|
||||
|
||||
@@ -30,5 +30,5 @@ def install(self, spec, prefix):
|
||||
make("install")
|
||||
install_tree('Scripts', prefix.bin)
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
run_env.set('ANTSPATH', self.prefix.bin)
|
||||
def setup_run_environment(self, env):
|
||||
env.set('ANTSPATH', self.prefix.bin)
|
||||
|
||||
@@ -28,10 +28,10 @@ class Argobots(AutotoolsPackage):
|
||||
|
||||
variant("valgrind", default=False, description="Enable Valgrind")
|
||||
|
||||
depends_on("m4", type=("build"), when="@develop")
|
||||
depends_on("autoconf", type=("build"), when="@develop")
|
||||
depends_on("automake", type=("build"), when="@develop")
|
||||
depends_on("libtool", type=("build"), when="@develop")
|
||||
depends_on("m4", type=("build"), when="@master")
|
||||
depends_on("autoconf", type=("build"), when="@master")
|
||||
depends_on("automake", type=("build"), when="@master")
|
||||
depends_on("libtool", type=("build"), when="@master")
|
||||
depends_on("valgrind", when="+valgrind")
|
||||
|
||||
def configure_args(self):
|
||||
|
||||
@@ -0,0 +1,59 @@
|
||||
diff -ur spack-src.org/src/mtl_headers/mtl/linalg_vec.h spack-src/src/mtl_headers/mtl/linalg_vec.h
|
||||
--- spack-src.org/src/mtl_headers/mtl/linalg_vec.h 2019-12-25 13:38:14.191695748 +0900
|
||||
+++ spack-src/src/mtl_headers/mtl/linalg_vec.h 2019-12-25 13:39:08.887447770 +0900
|
||||
@@ -116,6 +116,7 @@
|
||||
typedef difference_type Vec_difference_type;
|
||||
typedef iterator Vec_iterator;
|
||||
typedef const_iterator Vec_const_iterator;
|
||||
+ typedef value_type Vec_value_type;
|
||||
|
||||
class IndexArray {
|
||||
public:
|
||||
diff -ur spack-src.org/src/utils/toolbox/database/HDFDatabase.cc spack-src/src/utils/toolbox/database/HDFDatabase.cc
|
||||
--- spack-src.org/src/utils/toolbox/database/HDFDatabase.cc 2019-12-25 13:38:14.201696799 +0900
|
||||
+++ spack-src/src/utils/toolbox/database/HDFDatabase.cc 2019-12-25 14:50:42.627965265 +0900
|
||||
@@ -686,7 +686,7 @@
|
||||
herr_t errf;
|
||||
if (nelements > 0) {
|
||||
|
||||
- hsize_t dim[] = {nelements};
|
||||
+ hsize_t dim[] = {(unsigned long long)nelements};
|
||||
hid_t space = H5Screate_simple(1, dim, NULL);
|
||||
#ifdef ASSERT_HDF5_RETURN_VALUES
|
||||
assert( space >= 0 );
|
||||
@@ -1233,7 +1233,7 @@
|
||||
herr_t errf;
|
||||
if (nelements > 0) {
|
||||
|
||||
- hsize_t dim[] = {nelements};
|
||||
+ hsize_t dim[] = {(unsigned long long)nelements};
|
||||
hid_t space = H5Screate_simple(1, dim, NULL);
|
||||
#ifdef ASSERT_HDF5_RETURN_VALUES
|
||||
assert( space >= 0 );
|
||||
@@ -1478,7 +1478,7 @@
|
||||
herr_t errf;
|
||||
if (nelements > 0) {
|
||||
|
||||
- hsize_t dim[] = {nelements};
|
||||
+ hsize_t dim[] = {(unsigned long long)nelements};
|
||||
hid_t space = H5Screate_simple(1, dim, NULL);
|
||||
#ifdef ASSERT_HDF5_RETURN_VALUES
|
||||
assert( space >= 0 );
|
||||
@@ -1722,7 +1722,7 @@
|
||||
herr_t errf;
|
||||
if (nelements > 0) {
|
||||
|
||||
- hsize_t dim[] = {nelements};
|
||||
+ hsize_t dim[] = {(unsigned long long)nelements};
|
||||
hid_t space = H5Screate_simple(1, dim, NULL);
|
||||
#ifdef ASSERT_HDF5_RETURN_VALUES
|
||||
assert(space >= 0);
|
||||
@@ -1998,7 +1998,7 @@
|
||||
assert( errf >= 0 );
|
||||
#endif
|
||||
|
||||
- hsize_t dim[] = {nelements};
|
||||
+ hsize_t dim[] = {(unsigned long long)nelements};
|
||||
hid_t space = H5Screate_simple(1, dim, NULL);
|
||||
#ifdef ASSERT_HDF5_RETURN_VALUES
|
||||
assert( space >= 0 );
|
||||
@@ -28,6 +28,8 @@ class Aspa(MakefilePackage):
|
||||
depends_on('mpi', when='+mpi')
|
||||
depends_on('hdf5')
|
||||
|
||||
patch('fix_common_errors.patch')
|
||||
|
||||
@property
|
||||
def build_targets(self):
|
||||
targets = [
|
||||
|
||||
@@ -11,12 +11,13 @@ class Aspect(CMakePackage):
|
||||
Earth's mantle and elsewhere."""
|
||||
|
||||
homepage = "https://aspect.geodynamics.org"
|
||||
url = "https://github.com/geodynamics/aspect/releases/download/v2.0.0/aspect-2.0.0.tar.gz"
|
||||
url = "https://github.com/geodynamics/aspect/releases/download/v2.1.0/aspect-2.1.0.tar.gz"
|
||||
git = "https://github.com/geodynamics/aspect.git"
|
||||
|
||||
maintainers = ['tjhei']
|
||||
|
||||
version('develop', branch='master')
|
||||
version('2.1.0', sha256='bd574d60ed9df1f4b98e68cd526a074d0527c0792763187c9851912327d861a3')
|
||||
version('2.0.1', sha256='0bf5600c42afce9d39c1d285b0654ecfdeb0f30e9f3421651c95f54ca01ac165')
|
||||
version('2.0.0', sha256='d485c07f54248e824bdfa35f3eec8971b65e8b7114552ffa2c771bc0dede8cc0')
|
||||
|
||||
@@ -35,5 +36,5 @@ def cmake_args(self):
|
||||
('ON' if '+fpe' in self.spec else 'OFF')
|
||||
]
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
run_env.set('Aspect_DIR', self.prefix)
|
||||
def setup_run_environment(self, env):
|
||||
env.set('Aspect_DIR', self.prefix)
|
||||
|
||||
@@ -7,16 +7,16 @@
|
||||
|
||||
|
||||
# See also: AspellDictPackage
|
||||
class Aspell(AutotoolsPackage):
|
||||
class Aspell(AutotoolsPackage, GNUMirrorPackage):
|
||||
"""GNU Aspell is a Free and Open Source spell checker designed to
|
||||
eventually replace Ispell."""
|
||||
|
||||
homepage = "http://aspell.net/"
|
||||
url = "https://ftpmirror.gnu.org/aspell/aspell-0.60.6.1.tar.gz"
|
||||
gnu_mirror_path = "aspell/aspell-0.60.6.1.tar.gz"
|
||||
|
||||
extendable = True # support activating dictionaries
|
||||
extendable = True # support activating dictionaries
|
||||
|
||||
version('0.60.6.1', sha256='f52583a83a63633701c5f71db3dc40aab87b7f76b29723aeb27941eff42df6e1')
|
||||
|
||||
patch('darwin.patch', when='platform=darwin')
|
||||
patch('fix_cpp.patch')
|
||||
patch('issue-519.patch', when='@:0.60.6.1')
|
||||
|
||||
@@ -6,10 +6,10 @@
|
||||
from spack import *
|
||||
|
||||
|
||||
class Aspell6De(AspellDictPackage):
|
||||
class Aspell6De(AspellDictPackage, GNUMirrorPackage):
|
||||
"""German (de) dictionary for aspell."""
|
||||
|
||||
homepage = "http://aspell.net/"
|
||||
url = "https://ftpmirror.gnu.org/aspell/dict/de/aspell6-de-20030222-1.tar.bz2"
|
||||
gnu_mirror_path = "aspell/dict/de/aspell6-de-20030222-1.tar.bz2"
|
||||
|
||||
version('6-de-20030222-1', sha256='ba6c94e11bc2e0e6e43ce0f7822c5bba5ca5ac77129ef90c190b33632416e906')
|
||||
|
||||
@@ -6,10 +6,10 @@
|
||||
from spack import *
|
||||
|
||||
|
||||
class Aspell6En(AspellDictPackage):
|
||||
class Aspell6En(AspellDictPackage, GNUMirrorPackage):
|
||||
"""English (en) dictionary for aspell."""
|
||||
|
||||
homepage = "http://aspell.net/"
|
||||
url = "https://ftpmirror.gnu.org/aspell/dict/en/aspell6-en-2017.01.22-0.tar.bz2"
|
||||
gnu_mirror_path = "aspell/dict/en/aspell6-en-2017.01.22-0.tar.bz2"
|
||||
|
||||
version('2017.01.22-0', sha256='93c73fae3eab5ea3ca6db3cea8770715a820f1b7d6ea2b932dd66a17f8fd55e1')
|
||||
|
||||
@@ -6,10 +6,10 @@
|
||||
from spack import *
|
||||
|
||||
|
||||
class Aspell6Es(AspellDictPackage):
|
||||
class Aspell6Es(AspellDictPackage, GNUMirrorPackage):
|
||||
"""Spanish (es) dictionary for aspell."""
|
||||
|
||||
homepage = "http://aspell.net/"
|
||||
url = "https://ftpmirror.gnu.org/aspell/dict/es/aspell6-es-1.11-2.tar.bz2"
|
||||
gnu_mirror_path = "aspell/dict/es/aspell6-es-1.11-2.tar.bz2"
|
||||
|
||||
version('1.11-2', sha256='ad367fa1e7069c72eb7ae37e4d39c30a44d32a6aa73cedccbd0d06a69018afcc')
|
||||
|
||||
@@ -17,8 +17,8 @@ class AsperaCli(Package):
|
||||
url='https://download.asperasoft.com/download/sw/cli/3.7.7/aspera-cli-3.7.7.608.927cce8-linux-64-release.sh',
|
||||
expand=False)
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
run_env.prepend_path('PATH', self.prefix.cli.bin)
|
||||
def setup_run_environment(self, env):
|
||||
env.prepend_path('PATH', self.prefix.cli.bin)
|
||||
|
||||
def install(self, spec, prefix):
|
||||
runfile = glob(join_path(self.stage.source_path, 'aspera-cli*.sh'))[0]
|
||||
|
||||
@@ -44,5 +44,5 @@ def install(self, spec, prefix):
|
||||
filter_file('astral.jar', join_path(prefix.tools, jar_file),
|
||||
script, **kwargs)
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
run_env.set('ASTRAL_HOME', self.prefix.tools)
|
||||
def setup_run_environment(self, env):
|
||||
env.set('ASTRAL_HOME', self.prefix.tools)
|
||||
|
||||
@@ -35,6 +35,6 @@ def url_for_version(self, version):
|
||||
url = 'http://ftp.gnome.org/pub/gnome/sources/at-spi2-core'
|
||||
return url + '/%s/at-spi2-core-%s.tar.xz' % (version.up_to(2), version)
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
def setup_build_environment(self, env):
|
||||
# this avoids an "import site" error in the build
|
||||
spack_env.unset('PYTHONHOME')
|
||||
env.unset('PYTHONHOME')
|
||||
|
||||
@@ -35,11 +35,11 @@ def url_for_version(self, version):
|
||||
url = 'http://ftp.gnome.org/pub/gnome/sources/atk'
|
||||
return url + '/%s/atk-%s.tar.xz' % (version.up_to(2), version)
|
||||
|
||||
def setup_dependent_environment(self, spack_env, run_env, dependent_spec):
|
||||
spack_env.prepend_path("XDG_DATA_DIRS",
|
||||
self.prefix.share)
|
||||
run_env.prepend_path("XDG_DATA_DIRS",
|
||||
self.prefix.share)
|
||||
def setup_dependent_build_environment(self, env, dependent_spec):
|
||||
env.prepend_path("XDG_DATA_DIRS", self.prefix.share)
|
||||
|
||||
def setup_dependent_run_environment(self, env, dependent_spec):
|
||||
env.prepend_path("XDG_DATA_DIRS", self.prefix.share)
|
||||
|
||||
def install(self, spec, prefix):
|
||||
with working_dir('spack-build', create=True):
|
||||
|
||||
@@ -34,6 +34,31 @@ class Augustus(MakefilePackage):
|
||||
depends_on('curl', when='@3.3.1:')
|
||||
|
||||
def edit(self, spec, prefix):
|
||||
# Set compile commands for each compiler and
|
||||
# Fix for using 'boost' on Spack. (only after ver.3.3.1-tag1)
|
||||
if self.version >= Version('3.3.1-tag1'):
|
||||
with working_dir(join_path('auxprogs', 'utrrnaseq', 'Debug')):
|
||||
filter_file('g++', spack_cxx, 'makefile', string=True)
|
||||
filter_file('g++ -I/usr/include/boost', '{0} -I{1}'
|
||||
.format(spack_cxx,
|
||||
self.spec['boost'].prefix.include),
|
||||
'src/subdir.mk', string=True)
|
||||
|
||||
# Set compile commands to all makefiles.
|
||||
makefiles = [
|
||||
'auxprogs/aln2wig/Makefile',
|
||||
'auxprogs/bam2hints/Makefile',
|
||||
'auxprogs/bam2wig/Makefile',
|
||||
'auxprogs/checkTargetSortedness/Makefile',
|
||||
'auxprogs/compileSpliceCands/Makefile',
|
||||
'auxprogs/homGeneMapping/src/Makefile',
|
||||
'auxprogs/joingenes/Makefile',
|
||||
'src/Makefile'
|
||||
]
|
||||
for makefile in makefiles:
|
||||
filter_file('gcc', spack_cc, makefile, string=True)
|
||||
filter_file('g++', spack_cxx, makefile, string=True)
|
||||
|
||||
with working_dir(join_path('auxprogs', 'filterBam', 'src')):
|
||||
makefile = FileFilter('Makefile')
|
||||
makefile.filter('BAMTOOLS = .*', 'BAMTOOLS = %s' % self.spec[
|
||||
|
||||
@@ -6,11 +6,11 @@
|
||||
from spack import *
|
||||
|
||||
|
||||
class Autoconf(AutotoolsPackage):
|
||||
class Autoconf(AutotoolsPackage, GNUMirrorPackage):
|
||||
"""Autoconf -- system configuration part of autotools"""
|
||||
|
||||
homepage = 'https://www.gnu.org/software/autoconf/'
|
||||
url = 'https://ftpmirror.gnu.org/autoconf/autoconf-2.69.tar.gz'
|
||||
gnu_mirror_path = 'autoconf/autoconf-2.69.tar.gz'
|
||||
|
||||
version('2.69', sha256='954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969')
|
||||
version('2.62', sha256='83aa747e6443def0ebd1882509c53f5a2133f502ddefa21b3de141c433914bdd')
|
||||
|
||||
@@ -6,14 +6,14 @@
|
||||
from spack import *
|
||||
|
||||
|
||||
class Autogen(AutotoolsPackage):
|
||||
class Autogen(AutotoolsPackage, GNUMirrorPackage):
|
||||
"""AutoGen is a tool designed to simplify the creation and maintenance of
|
||||
programs that contain large amounts of repetitious text. It is especially
|
||||
valuable in programs that have several blocks of text that must be kept
|
||||
synchronized."""
|
||||
|
||||
homepage = "https://www.gnu.org/software/autogen/index.html"
|
||||
url = "https://ftpmirror.gnu.org/autogen/rel5.18.12/autogen-5.18.12.tar.gz"
|
||||
gnu_mirror_path = "autogen/rel5.18.12/autogen-5.18.12.tar.gz"
|
||||
list_url = "https://ftp.gnu.org/gnu/autogen"
|
||||
list_depth = 1
|
||||
|
||||
|
||||
@@ -6,11 +6,11 @@
|
||||
from spack import *
|
||||
|
||||
|
||||
class Automake(AutotoolsPackage):
|
||||
class Automake(AutotoolsPackage, GNUMirrorPackage):
|
||||
"""Automake -- make file builder part of autotools"""
|
||||
|
||||
homepage = 'http://www.gnu.org/software/automake/'
|
||||
url = 'https://ftpmirror.gnu.org/automake/automake-1.15.tar.gz'
|
||||
gnu_mirror_path = 'automake/automake-1.15.tar.gz'
|
||||
|
||||
version('1.16.1', sha256='608a97523f97db32f1f5d5615c98ca69326ced2054c9f82e65bade7fc4c9dea8')
|
||||
version('1.15.1', sha256='988e32527abe052307d21c8ca000aa238b914df363a617e38f4fb89f5abf6260')
|
||||
|
||||
52
var/spack/repos/builtin/packages/avizo/package.py
Normal file
52
var/spack/repos/builtin/packages/avizo/package.py
Normal file
@@ -0,0 +1,52 @@
|
||||
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
from spack import *
|
||||
import os
|
||||
import tarfile
|
||||
|
||||
|
||||
class Avizo(Package):
|
||||
"""Avizo is a 3D analysis software for scientific and industrial data.
|
||||
Wherever three-dimensional imaging data sets need to be processed, in
|
||||
materials science, geosciences or engineering applications, Avizo offers
|
||||
abundant state-of-the-art image data processing, exploration and analysis
|
||||
features within an intuitive workflow and easy-to-use graphical user
|
||||
interface."""
|
||||
|
||||
homepage = "https://www.thermofisher.com/sa/en/home/industrial/electron-microscopy/electron-microscopy-instruments-workflow-solutions/3d-visualization-analysis-software.html"
|
||||
version('9.7.0', '9c9b9e81957387f4218df0c5adbb80717e9ae80ab3ca6ff8da523f7f499dcc5b',
|
||||
expand=False)
|
||||
|
||||
def url_for_version(self, version):
|
||||
return "file://{0}/Avizo-{1}-Linux64-gcc44.bin".format(os.getcwd(),
|
||||
version.joined)
|
||||
|
||||
# Licensing
|
||||
license_required = True
|
||||
license_comment = '#'
|
||||
license_files = ['share/license/password.dat']
|
||||
license_vars = ['MCSLMD_LICENSE_FILE']
|
||||
|
||||
def setup_run_environment(self, env):
|
||||
run_env.set('MCSLMD_LICENSE_FILE', join_path(self.prefix.share.license,
|
||||
'password.dat'))
|
||||
|
||||
def install(self, spec, prefix):
|
||||
ver = self.version.joined
|
||||
sh = which('sh')
|
||||
sh('Avizo-{0}-Linux64-gcc44.bin'.format(ver), '--noexec', '--keep')
|
||||
|
||||
with working_dir('Avizo'):
|
||||
avizo_tar = tarfile.open(name='Avizo-{0}-Linux64-gcc44.tar.bz2'
|
||||
.format(self.version))
|
||||
avizo_tar.extractall()
|
||||
|
||||
with working_dir('Avizo-{0}'.format(self.version)):
|
||||
install_tree('bin', prefix.bin)
|
||||
install_tree('lib', prefix.lib)
|
||||
install_tree('data', prefix.data)
|
||||
install_tree('share', prefix.share)
|
||||
install_tree('python', prefix.python)
|
||||
@@ -0,0 +1,26 @@
|
||||
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
from spack import *
|
||||
|
||||
|
||||
class AwsParallelcluster(PythonPackage):
|
||||
"""AWS ParallelCluster is an AWS supported Open Source cluster management
|
||||
tool to deploy and manage HPC clusters in the AWS cloud."""
|
||||
|
||||
homepage = "https://github.com/aws/aws-parallelcluster"
|
||||
url = "https://pypi.io/packages/source/a/aws-parallelcluster/aws-parallelcluster-2.5.0.tar.gz"
|
||||
|
||||
version('2.5.0', sha256='3b0209342ea0d9d8cc95505456103ad87c2d4e35771aa838765918194efd0ad3')
|
||||
|
||||
depends_on('python@2.7:', type=('build', 'run'))
|
||||
depends_on('py-setuptools', type='build')
|
||||
depends_on('py-boto3@1.10.15:', type=('build', 'run'))
|
||||
depends_on('py-future@0.16.0:0.18.2', type=('build', 'run'))
|
||||
depends_on('py-tabulate@0.8.2:0.8.3', type=('build', 'run'))
|
||||
depends_on('py-ipaddress@1.0.22:', type=('build', 'run'))
|
||||
depends_on('py-enum34@1.1.6:', when='^python@:3.3', type=('build', 'run'))
|
||||
depends_on('py-pyyaml@5.1.2:', type=('build', 'run'))
|
||||
depends_on('py-configparser@3.5.0:3.8.1', when='^python@:2', type=('build', 'run'))
|
||||
@@ -12,21 +12,21 @@ class Awscli(PythonPackage):
|
||||
Amazon Web Services"""
|
||||
|
||||
homepage = "https://pypi.org/project/awscli/"
|
||||
url = "https://pypi.io/packages/source/a/awscli/awscli-1.16.179.tar.gz"
|
||||
url = "https://pypi.io/packages/source/a/awscli/awscli-1.16.308.tar.gz"
|
||||
|
||||
version('1.16.308', sha256='3632fb1db2538128509a7b5e89f2a2c4ea3426bec139944247bddc4d79bf7603')
|
||||
version('1.16.179', sha256='6a87114d1325358d000abe22b2103baae7b91f053ff245b9fde33cb0affb5e4f')
|
||||
|
||||
depends_on('py-setuptools', type='build')
|
||||
depends_on('py-docutils@0.10:', type=('build', 'run'))
|
||||
depends_on('py-colorama@0.2.5:0.3.9', type=('build', 'run'))
|
||||
depends_on('py-botocore@1.13.44', when='@1.16.308', type=('build', 'run'))
|
||||
depends_on('py-botocore@1.12.169', when='@1.16.179', type=('build', 'run'))
|
||||
depends_on('py-docutils@0.10:0.15', type=('build', 'run'))
|
||||
depends_on('py-rsa@3.1.2:3.5.0', type=('build', 'run'))
|
||||
depends_on('py-pyyaml@3.10:3.13', type=('build', 'run'),
|
||||
when='^python@2.6:2.6.99')
|
||||
depends_on('py-pyyaml@3.10:5.1', type=('build', 'run'),
|
||||
when='^python@2.7:')
|
||||
depends_on('py-argparse@1.1:', when='^python@2.6:2.6.99',
|
||||
type=('build', 'run'))
|
||||
depends_on('py-s3transfer@0.2.0:0.2.999', type=('build', 'run'))
|
||||
depends_on('py-botocore@1.12.169', type=('build', 'run'))
|
||||
depends_on('py-argparse@1.1:', when='^python@:2.6', type=('build', 'run'))
|
||||
depends_on('py-pyyaml@3.10:3.13', when='^python@:2.6,3.0:3.3', type=('build', 'run'))
|
||||
depends_on('py-pyyaml@3.10:5.2', when='^python@3.4:', type=('build', 'run'))
|
||||
depends_on('py-colorama@0.2.5:0.3.9', when='^python@:2.6,3.0:3.3', type=('build', 'run'))
|
||||
depends_on('py-colorama@0.2.5:0.4.1', when='^python@3.4:', type=('build', 'run'))
|
||||
depends_on('py-nose', type='test')
|
||||
depends_on('py-mock@1.3.0:', type='test')
|
||||
|
||||
@@ -6,11 +6,11 @@
|
||||
from spack import *
|
||||
|
||||
|
||||
class Bash(AutotoolsPackage):
|
||||
class Bash(AutotoolsPackage, GNUMirrorPackage):
|
||||
"""The GNU Project's Bourne Again SHell."""
|
||||
|
||||
homepage = "https://www.gnu.org/software/bash/"
|
||||
url = "https://ftpmirror.gnu.org/bash/bash-4.4.tar.gz"
|
||||
gnu_mirror_path = "bash/bash-4.4.tar.gz"
|
||||
|
||||
version('5.0', sha256='b4a80f2ac66170b2913efbfb9f2594f1f76c7b1afd11f799e22035d63077fb4d')
|
||||
version('4.4.12', sha256='57d8432be54541531a496fd4904fdc08c12542f43605a9202594fa5d5f9f2331')
|
||||
@@ -35,6 +35,7 @@ class Bash(AutotoolsPackage):
|
||||
('5.0', '011', '2c4de332b91eaf797abbbd6c79709690b5cbd48b12e8dfe748096dbd7bf474ea'),
|
||||
]
|
||||
|
||||
# TODO: patches below are not managed by the GNUMirrorPackage base class
|
||||
for ver, num, checksum in patches:
|
||||
ver = Version(ver)
|
||||
patch('https://ftpmirror.gnu.org/bash/bash-{0}-patches/bash{1}-{2}'.format(ver, ver.joined, num),
|
||||
|
||||
@@ -0,0 +1,16 @@
|
||||
--- a/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelConfiguration.java
|
||||
+++ b/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelConfiguration.java
|
||||
@@ -150,6 +150,13 @@
|
||||
builder.put("PATH", null);
|
||||
builder.put("LD_LIBRARY_PATH", null);
|
||||
}
|
||||
+
|
||||
+ Map<String, String> spackEnv = System.getenv();
|
||||
+ for (String envName : spackEnv.keySet()) {
|
||||
+ if (envName.startsWith("SPACK_")) {
|
||||
+ builder.put(envName, spackEnv.get(envName));
|
||||
+ }
|
||||
+ }
|
||||
}
|
||||
|
||||
private static PathFragment determineShellExecutable(OS os, PathFragment fromOption) {
|
||||
@@ -0,0 +1,16 @@
|
||||
--- a/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelRuleClassProvider.java
|
||||
+++ b/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelRuleClassProvider.java
|
||||
@@ -168,6 +168,13 @@ public class BazelRuleClassProvider {
|
||||
env.put("PATH", null);
|
||||
}
|
||||
|
||||
+ Map<String, String> spackEnv = System.getenv();
|
||||
+ for (String envName : spackEnv.keySet()) {
|
||||
+ if (envName.startsWith("SPACK_")) {
|
||||
+ env.put(envName, spackEnv.get(envName));
|
||||
+ }
|
||||
+ }
|
||||
+
|
||||
// Shell environment variables specified via options take precedence over the
|
||||
// ones inherited from the fragments. In the long run, these fragments will
|
||||
// be replaced by appropriate default rc files anyway.
|
||||
@@ -0,0 +1,16 @@
|
||||
--- a/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelRuleClassProvider.java
|
||||
+++ b/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelRuleClassProvider.java
|
||||
@@ -181,6 +181,13 @@ public class BazelRuleClassProvider {
|
||||
env.put("PATH", null);
|
||||
}
|
||||
|
||||
+ Map<String, String> spackEnv = System.getenv();
|
||||
+ for (String envName : spackEnv.keySet()) {
|
||||
+ if (envName.startsWith("SPACK_")) {
|
||||
+ env.put(envName, spackEnv.get(envName));
|
||||
+ }
|
||||
+ }
|
||||
+
|
||||
// Shell environment variables specified via options take precedence over the
|
||||
// ones inherited from the fragments. In the long run, these fragments will
|
||||
// be replaced by appropriate default rc files anyway.
|
||||
@@ -1,6 +1,6 @@
|
||||
--- bazel-0.3.1/tools/cpp/cc_configure.bzl 2016-10-13 14:00:32.118358387 +0200
|
||||
+++ bazel-0.3.1/tools/cpp/cc_configure.bzl 2016-10-13 13:52:45.342610147 +0200
|
||||
@@ -173,8 +173,23 @@
|
||||
--- a/tools/cpp/cc_configure.bzl
|
||||
+++ b/tools/cpp/cc_configure.bzl
|
||||
@@ -173,8 +173,19 @@
|
||||
else:
|
||||
inc_dirs = result.stderr[index1 + 1:index2].strip()
|
||||
|
||||
@@ -12,12 +12,8 @@
|
||||
+ ]
|
||||
+
|
||||
+ env = repository_ctx.os.environ
|
||||
+ if "SPACK_DEPENDENCIES" in env:
|
||||
+ for dep in env["SPACK_DEPENDENCIES"].split(":"):
|
||||
+ path = dep + "/include"
|
||||
+ # path = repository_ctx.os.path.join(dep, "include")
|
||||
+ # if not repository_ctx.os.path.exists(path):
|
||||
+ # continue
|
||||
+ if "SPACK_INCLUDE_DIRS" in env:
|
||||
+ for path in env["SPACK_INCLUDE_DIRS"].split(":"):
|
||||
+ default_inc_directories.append(
|
||||
+ repository_ctx.path(_cxx_inc_convert(path))
|
||||
+ )
|
||||
@@ -0,0 +1,24 @@
|
||||
--- a/tools/cpp/cc_configure.bzl
|
||||
+++ b/tools/cpp/cc_configure.bzl
|
||||
@@ -200,8 +200,19 @@
|
||||
else:
|
||||
inc_dirs = result.stderr[index1 + 1:index2].strip()
|
||||
|
||||
- return [_escape_string(repository_ctx.path(_cxx_inc_convert(p)))
|
||||
- for p in inc_dirs.split("\n")]
|
||||
+ default_inc_directories = [
|
||||
+ _escape_string(repository_ctx.path(_cxx_inc_convert(p)))
|
||||
+ for p in inc_dirs.split("\n")
|
||||
+ ]
|
||||
+
|
||||
+ env = repository_ctx.os.environ
|
||||
+ if "SPACK_INCLUDE_DIRS" in env:
|
||||
+ for path in env["SPACK_INCLUDE_DIRS"].split(":"):
|
||||
+ default_inc_directories.append(
|
||||
+ repository_ctx.path(_cxx_inc_convert(path))
|
||||
+ )
|
||||
+
|
||||
+ return default_inc_directories
|
||||
|
||||
|
||||
def _add_option_if_supported(repository_ctx, cc, option):
|
||||
11
var/spack/repos/builtin/packages/bazel/compile-0.13.patch
Normal file
11
var/spack/repos/builtin/packages/bazel/compile-0.13.patch
Normal file
@@ -0,0 +1,11 @@
|
||||
--- a/compile.sh
|
||||
+++ b/compile.sh
|
||||
@@ -92,7 +92,7 @@
|
||||
log "Building output/bazel"
|
||||
# We set host and target platform directly since the defaults in @bazel_tools
|
||||
# have not yet been generated.
|
||||
-bazel_build "src:bazel${EXE_EXT}" \
|
||||
+CC=$SPACK_CC CXX=$SPACK_CXX bazel_build "src:bazel${EXE_EXT}" \
|
||||
--host_platform=@bazel_tools//platforms:host_platform \
|
||||
--platforms=@bazel_tools//platforms:target_platform \
|
||||
|| fail "Could not build Bazel"
|
||||
11
var/spack/repos/builtin/packages/bazel/compile-0.16.patch
Normal file
11
var/spack/repos/builtin/packages/bazel/compile-0.16.patch
Normal file
@@ -0,0 +1,11 @@
|
||||
--- a/compile.sh
|
||||
+++ b/compile.sh
|
||||
@@ -92,7 +92,7 @@ display "."
|
||||
log "Building output/bazel"
|
||||
# We set host and target platform directly since the defaults in @bazel_tools
|
||||
# have not yet been generated.
|
||||
-bazel_build "src:bazel_nojdk${EXE_EXT}" \
|
||||
+CC=$SPACK_CC CXX=$SPACK_CXX bazel_build "src:bazel_nojdk${EXE_EXT}" \
|
||||
--host_platform=@bazel_tools//platforms:host_platform \
|
||||
--platforms=@bazel_tools//platforms:target_platform \
|
||||
|| fail "Could not build Bazel"
|
||||
11
var/spack/repos/builtin/packages/bazel/compile-0.21.patch
Normal file
11
var/spack/repos/builtin/packages/bazel/compile-0.21.patch
Normal file
@@ -0,0 +1,11 @@
|
||||
--- a/compile.sh
|
||||
+++ b/compile.sh
|
||||
@@ -92,7 +92,7 @@ display "."
|
||||
log "Building output/bazel"
|
||||
# We set host and target platform directly since the defaults in @bazel_tools
|
||||
# have not yet been generated.
|
||||
-bazel_build "src:bazel_nojdk${EXE_EXT}" \
|
||||
+CC=$SPACK_CC CXX=$SPACK_CXX bazel_build "src:bazel_nojdk${EXE_EXT}" \
|
||||
--action_env=PATH \
|
||||
--host_platform=@bazel_tools//platforms:host_platform \
|
||||
--platforms=@bazel_tools//platforms:target_platform \
|
||||
11
var/spack/repos/builtin/packages/bazel/compile-0.29.patch
Normal file
11
var/spack/repos/builtin/packages/bazel/compile-0.29.patch
Normal file
@@ -0,0 +1,11 @@
|
||||
--- a/compile.sh
|
||||
+++ b/compile.sh
|
||||
@@ -63,7 +63,7 @@
|
||||
log "Building output/bazel"
|
||||
# We set host and target platform directly because we are building for the local
|
||||
# host.
|
||||
-bazel_build "src:bazel_nojdk${EXE_EXT}" \
|
||||
+CC=$SPACK_CC CXX=$SPACK_CXX bazel_build "src:bazel_nojdk${EXE_EXT}" \
|
||||
--action_env=PATH \
|
||||
--host_platform=@local_config_platform//:host \
|
||||
--platforms=@local_config_platform//:host \
|
||||
11
var/spack/repos/builtin/packages/bazel/compile-0.3.patch
Normal file
11
var/spack/repos/builtin/packages/bazel/compile-0.3.patch
Normal file
@@ -0,0 +1,11 @@
|
||||
--- a/compile.sh
|
||||
+++ b/compile.sh
|
||||
@@ -99,7 +99,7 @@
|
||||
new_step 'Building Bazel with Bazel'
|
||||
display "."
|
||||
log "Building output/bazel"
|
||||
- bazel_build "src:bazel${EXE_EXT}"
|
||||
+ CC=$SPACK_CC CXX=$SPACK_CXX bazel_build "src:bazel${EXE_EXT}"
|
||||
cp -f "bazel-bin/src/bazel${EXE_EXT}" "output/bazel${EXE_EXT}"
|
||||
chmod 0755 "output/bazel${EXE_EXT}"
|
||||
BAZEL="$(pwd)/output/bazel${EXE_EXT}"
|
||||
11
var/spack/repos/builtin/packages/bazel/compile-0.4.patch
Normal file
11
var/spack/repos/builtin/packages/bazel/compile-0.4.patch
Normal file
@@ -0,0 +1,11 @@
|
||||
--- a/compile.sh
|
||||
+++ b/compile.sh
|
||||
@@ -124,7 +124,7 @@
|
||||
new_step 'Building Bazel with Bazel'
|
||||
display "."
|
||||
log "Building output/bazel"
|
||||
- bazel_build "src:bazel${EXE_EXT}" \
|
||||
+ CC=$SPACK_CC CXX=$SPACK_CXX bazel_build "src:bazel${EXE_EXT}" \
|
||||
|| fail "Could not build Bazel"
|
||||
bazel_bin_path="$(get_bazel_bin_path)/src/bazel${EXE_EXT}"
|
||||
[ -e "$bazel_bin_path" ] \
|
||||
11
var/spack/repos/builtin/packages/bazel/compile-0.6.patch
Normal file
11
var/spack/repos/builtin/packages/bazel/compile-0.6.patch
Normal file
@@ -0,0 +1,11 @@
|
||||
--- a/compile.sh
|
||||
+++ b/compile.sh
|
||||
@@ -85,7 +85,7 @@
|
||||
log "Building output/bazel"
|
||||
# We set host and target platform directly since the defaults in @bazel_tools
|
||||
# have not yet been generated.
|
||||
-bazel_build "src:bazel${EXE_EXT}" \
|
||||
+CC=$SPACK_CC CXX=$SPACK_CXX bazel_build "src:bazel${EXE_EXT}" \
|
||||
--experimental_host_platform=//tools/platforms:host_platform \
|
||||
--experimental_platforms=//tools/platforms:target_platform \
|
||||
|| fail "Could not build Bazel"
|
||||
11
var/spack/repos/builtin/packages/bazel/compile-0.9.patch
Normal file
11
var/spack/repos/builtin/packages/bazel/compile-0.9.patch
Normal file
@@ -0,0 +1,11 @@
|
||||
--- a/compile.sh
|
||||
+++ b/compile.sh
|
||||
@@ -92,7 +92,7 @@
|
||||
log "Building output/bazel"
|
||||
# We set host and target platform directly since the defaults in @bazel_tools
|
||||
# have not yet been generated.
|
||||
-bazel_build "src:bazel${EXE_EXT}" \
|
||||
+CC=$SPACK_CC CXX=$SPACK_CXX bazel_build "src:bazel${EXE_EXT}" \
|
||||
--host_platform=//tools/platforms:host_platform \
|
||||
--platforms=//tools/platforms:target_platform \
|
||||
|| fail "Could not build Bazel"
|
||||
@@ -1,129 +0,0 @@
|
||||
--- a/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelConfiguration.java.orig 2018-05-23 12:11:29.319402761 +0200
|
||||
+++ b/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelConfiguration.java 2018-05-23 12:35:21.817904301 +0200
|
||||
@@ -150,6 +150,126 @@
|
||||
builder.put("PATH", null);
|
||||
builder.put("LD_LIBRARY_PATH", null);
|
||||
}
|
||||
+
|
||||
+ String spack_prefix = System.getenv("SPACK_PREFIX");
|
||||
+ if (spack_prefix != null) {
|
||||
+ builder.put("SPACK_PREFIX", spack_prefix);
|
||||
+ }
|
||||
+
|
||||
+ String spack_env_path = System.getenv("SPACK_ENV_PATH");
|
||||
+ if (spack_env_path != null) {
|
||||
+ builder.put("SPACK_ENV_PATH", spack_env_path);
|
||||
+ }
|
||||
+
|
||||
+ String spack_debug_log_id = System.getenv("SPACK_DEBUG_LOG_ID");
|
||||
+ if (spack_debug_log_id != null) {
|
||||
+ builder.put("SPACK_DEBUG_LOG_ID", spack_debug_log_id);
|
||||
+ }
|
||||
+
|
||||
+ String spack_debug_log_dir = System.getenv("SPACK_DEBUG_LOG_DIR");
|
||||
+ if (spack_debug_log_dir != null) {
|
||||
+ builder.put("SPACK_DEBUG_LOG_DIR", spack_debug_log_dir);
|
||||
+ }
|
||||
+
|
||||
+ String spack_compiler_spec = System.getenv("SPACK_COMPILER_SPEC");
|
||||
+ if (spack_compiler_spec != null) {
|
||||
+ builder.put("SPACK_COMPILER_SPEC", spack_compiler_spec);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cc_rpath_arg = System.getenv("SPACK_CC_RPATH_ARG");
|
||||
+ if (spack_cc_rpath_arg != null) {
|
||||
+ builder.put("SPACK_CC_RPATH_ARG", spack_cc_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cxx_rpath_arg = System.getenv("SPACK_CXX_RPATH_ARG");
|
||||
+ if (spack_cxx_rpath_arg != null) {
|
||||
+ builder.put("SPACK_CXX_RPATH_ARG", spack_cxx_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_f77_rpath_arg = System.getenv("SPACK_F77_RPATH_ARG");
|
||||
+ if (spack_f77_rpath_arg != null) {
|
||||
+ builder.put("SPACK_F77_RPATH_ARG", spack_f77_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fc_rpath_arg = System.getenv("SPACK_FC_RPATH_ARG");
|
||||
+ if (spack_fc_rpath_arg != null) {
|
||||
+ builder.put("SPACK_FC_RPATH_ARG", spack_fc_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_short_spec = System.getenv("SPACK_SHORT_SPEC");
|
||||
+ if (spack_short_spec != null) {
|
||||
+ builder.put("SPACK_SHORT_SPEC", spack_short_spec);
|
||||
+ }
|
||||
+
|
||||
+ String spack_system_dirs = System.getenv("SPACK_SYSTEM_DIRS");
|
||||
+ if (spack_system_dirs != null) {
|
||||
+ builder.put("SPACK_SYSTEM_DIRS", spack_system_dirs);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cc = System.getenv("SPACK_CC");
|
||||
+ if (spack_cc != null) {
|
||||
+ builder.put("SPACK_CC", spack_cc);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cxx = System.getenv("SPACK_CXX");
|
||||
+ if (spack_cxx != null) {
|
||||
+ builder.put("SPACK_CXX", spack_cxx);
|
||||
+ }
|
||||
+
|
||||
+ String spack_f77 = System.getenv("SPACK_F77");
|
||||
+ if (spack_f77 != null) {
|
||||
+ builder.put("SPACK_F77", spack_f77);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fc = System.getenv("SPACK_FC");
|
||||
+ if (spack_fc != null) {
|
||||
+ builder.put("SPACK_FC", spack_fc);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cflags = System.getenv("SPACK_CFLAGS");
|
||||
+ if (spack_cflags != null) {
|
||||
+ builder.put("SPACK_CFLAGS", spack_cflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cxxflags = System.getenv("SPACK_CXXFLAGS");
|
||||
+ if (spack_cxxflags != null) {
|
||||
+ builder.put("SPACK_CXXFLAGS", spack_cxxflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fcflags = System.getenv("SPACK_FCFLAGS");
|
||||
+ if (spack_fcflags != null) {
|
||||
+ builder.put("SPACK_FCFLAGS", spack_fcflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fflags = System.getenv("SPACK_FFLAGS");
|
||||
+ if (spack_fflags != null) {
|
||||
+ builder.put("SPACK_FFLAGS", spack_fflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_ldflags = System.getenv("SPACK_LDFLAGS");
|
||||
+ if (spack_ldflags != null) {
|
||||
+ builder.put("SPACK_LDFLAGS", spack_ldflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_ldlibs = System.getenv("SPACK_LDLIBS");
|
||||
+ if (spack_ldlibs != null) {
|
||||
+ builder.put("SPACK_LDLIBS", spack_ldlibs);
|
||||
+ }
|
||||
+
|
||||
+ String spack_debug = System.getenv("SPACK_DEBUG");
|
||||
+ if (spack_debug != null) {
|
||||
+ builder.put("SPACK_DEBUG", spack_debug);
|
||||
+ }
|
||||
+
|
||||
+ String spack_test_command = System.getenv("SPACK_TEST_COMMAND");
|
||||
+ if (spack_test_command != null) {
|
||||
+ builder.put("SPACK_TEST_COMMAND", spack_test_command);
|
||||
+ }
|
||||
+
|
||||
+ String spack_dependencies = System.getenv("SPACK_DEPENDENCIES");
|
||||
+ if (spack_dependencies != null) {
|
||||
+ builder.put("SPACK_DEPENDENCIES", spack_dependencies);
|
||||
+ }
|
||||
}
|
||||
|
||||
private static PathFragment determineShellExecutable(OS os, PathFragment fromOption) {
|
||||
@@ -1,131 +0,0 @@
|
||||
diff --git a/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelRuleClassProvider.java b/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelRuleClassProvider.java
|
||||
index 72c40ac..2e73530 100755
|
||||
--- a/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelRuleClassProvider.java
|
||||
+++ b/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelRuleClassProvider.java
|
||||
@@ -168,6 +168,126 @@ public class BazelRuleClassProvider {
|
||||
env.put("PATH", null);
|
||||
}
|
||||
|
||||
+ String spack_prefix = System.getenv("SPACK_PREFIX");
|
||||
+ if (spack_prefix != null) {
|
||||
+ env.put("SPACK_PREFIX", spack_prefix);
|
||||
+ }
|
||||
+
|
||||
+ String spack_env_path = System.getenv("SPACK_ENV_PATH");
|
||||
+ if (spack_env_path != null) {
|
||||
+ env.put("SPACK_ENV_PATH", spack_env_path);
|
||||
+ }
|
||||
+
|
||||
+ String spack_debug_log_id = System.getenv("SPACK_DEBUG_LOG_ID");
|
||||
+ if (spack_debug_log_id != null) {
|
||||
+ env.put("SPACK_DEBUG_LOG_ID", spack_debug_log_id);
|
||||
+ }
|
||||
+
|
||||
+ String spack_debug_log_dir = System.getenv("SPACK_DEBUG_LOG_DIR");
|
||||
+ if (spack_debug_log_dir != null) {
|
||||
+ env.put("SPACK_DEBUG_LOG_DIR", spack_debug_log_dir);
|
||||
+ }
|
||||
+
|
||||
+ String spack_compiler_spec = System.getenv("SPACK_COMPILER_SPEC");
|
||||
+ if (spack_compiler_spec != null) {
|
||||
+ env.put("SPACK_COMPILER_SPEC", spack_compiler_spec);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cc_rpath_arg = System.getenv("SPACK_CC_RPATH_ARG");
|
||||
+ if (spack_cc_rpath_arg != null) {
|
||||
+ env.put("SPACK_CC_RPATH_ARG", spack_cc_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cxx_rpath_arg = System.getenv("SPACK_CXX_RPATH_ARG");
|
||||
+ if (spack_cxx_rpath_arg != null) {
|
||||
+ env.put("SPACK_CXX_RPATH_ARG", spack_cxx_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_f77_rpath_arg = System.getenv("SPACK_F77_RPATH_ARG");
|
||||
+ if (spack_f77_rpath_arg != null) {
|
||||
+ env.put("SPACK_F77_RPATH_ARG", spack_f77_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fc_rpath_arg = System.getenv("SPACK_FC_RPATH_ARG");
|
||||
+ if (spack_fc_rpath_arg != null) {
|
||||
+ env.put("SPACK_FC_RPATH_ARG", spack_fc_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_short_spec = System.getenv("SPACK_SHORT_SPEC");
|
||||
+ if (spack_short_spec != null) {
|
||||
+ env.put("SPACK_SHORT_SPEC", spack_short_spec);
|
||||
+ }
|
||||
+
|
||||
+ String spack_system_dirs = System.getenv("SPACK_SYSTEM_DIRS");
|
||||
+ if (spack_system_dirs != null) {
|
||||
+ env.put("SPACK_SYSTEM_DIRS", spack_system_dirs);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cc = System.getenv("SPACK_CC");
|
||||
+ if (spack_cc != null) {
|
||||
+ env.put("SPACK_CC", spack_cc);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cxx = System.getenv("SPACK_CXX");
|
||||
+ if (spack_cxx != null) {
|
||||
+ env.put("SPACK_CXX", spack_cxx);
|
||||
+ }
|
||||
+
|
||||
+ String spack_f77 = System.getenv("SPACK_F77");
|
||||
+ if (spack_f77 != null) {
|
||||
+ env.put("SPACK_F77", spack_f77);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fc = System.getenv("SPACK_FC");
|
||||
+ if (spack_fc != null) {
|
||||
+ env.put("SPACK_FC", spack_fc);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cflags = System.getenv("SPACK_CFLAGS");
|
||||
+ if (spack_cflags != null) {
|
||||
+ env.put("SPACK_CFLAGS", spack_cflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cxxflags = System.getenv("SPACK_CXXFLAGS");
|
||||
+ if (spack_cxxflags != null) {
|
||||
+ env.put("SPACK_CXXFLAGS", spack_cxxflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fcflags = System.getenv("SPACK_FCFLAGS");
|
||||
+ if (spack_fcflags != null) {
|
||||
+ env.put("SPACK_FCFLAGS", spack_fcflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fflags = System.getenv("SPACK_FFLAGS");
|
||||
+ if (spack_fflags != null) {
|
||||
+ env.put("SPACK_FFLAGS", spack_fflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_ldflags = System.getenv("SPACK_LDFLAGS");
|
||||
+ if (spack_ldflags != null) {
|
||||
+ env.put("SPACK_LDFLAGS", spack_ldflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_ldlibs = System.getenv("SPACK_LDLIBS");
|
||||
+ if (spack_ldlibs != null) {
|
||||
+ env.put("SPACK_LDLIBS", spack_ldlibs);
|
||||
+ }
|
||||
+
|
||||
+ String spack_debug = System.getenv("SPACK_DEBUG");
|
||||
+ if (spack_debug != null) {
|
||||
+ env.put("SPACK_DEBUG", spack_debug);
|
||||
+ }
|
||||
+
|
||||
+ String spack_test_command = System.getenv("SPACK_TEST_COMMAND");
|
||||
+ if (spack_test_command != null) {
|
||||
+ env.put("SPACK_TEST_COMMAND", spack_test_command);
|
||||
+ }
|
||||
+
|
||||
+ String spack_dependencies = System.getenv("SPACK_DEPENDENCIES");
|
||||
+ if (spack_dependencies != null) {
|
||||
+ env.put("SPACK_DEPENDENCIES", spack_dependencies);
|
||||
+ }
|
||||
+
|
||||
// Shell environment variables specified via options take precedence over the
|
||||
// ones inherited from the fragments. In the long run, these fragments will
|
||||
// be replaced by appropriate default rc files anyway.
|
||||
@@ -1,126 +0,0 @@
|
||||
diff --git a/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelConfiguration.java.orig b/home/jtang/spack/var/spack/stage/bazel-0.9.0-xcsfcyrpdn3df755cwpk4sxtfwjdv4ub/spack-expanded-archive/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelConfiguration.java
|
||||
index f1a7a1f..32cd181 100755
|
||||
--- a/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelConfiguration.java.orig
|
||||
+++ b/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelConfiguration.java
|
||||
@@ -154,6 +154,121 @@ public class BazelConfiguration extends Fragment {
|
||||
if (tmpdir != null) {
|
||||
builder.put("TMPDIR", tmpdir);
|
||||
}
|
||||
+
|
||||
+ String spack_prefix = System.getenv("SPACK_PREFIX");
|
||||
+ if (spack_prefix != null) {
|
||||
+ builder.put("SPACK_PREFIX", spack_prefix);
|
||||
+ }
|
||||
+
|
||||
+ String spack_env_path = System.getenv("SPACK_ENV_PATH");
|
||||
+ if (spack_env_path != null) {
|
||||
+ builder.put("SPACK_ENV_PATH", spack_env_path);
|
||||
+ }
|
||||
+
|
||||
+ String spack_debug_log_id = System.getenv("SPACK_DEBUG_LOG_ID");
|
||||
+ if (spack_debug_log_id != null) {
|
||||
+ builder.put("SPACK_DEBUG_LOG_ID", spack_debug_log_id);
|
||||
+ }
|
||||
+
|
||||
+ String spack_debug_log_dir = System.getenv("SPACK_DEBUG_LOG_DIR");
|
||||
+ if (spack_debug_log_dir != null) {
|
||||
+ builder.put("SPACK_DEBUG_LOG_DIR", spack_debug_log_dir);
|
||||
+ }
|
||||
+
|
||||
+ String spack_compiler_spec = System.getenv("SPACK_COMPILER_SPEC");
|
||||
+ if (spack_compiler_spec != null) {
|
||||
+ builder.put("SPACK_COMPILER_SPEC", spack_compiler_spec);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cc_rpath_arg = System.getenv("SPACK_CC_RPATH_ARG");
|
||||
+ if (spack_cc_rpath_arg != null) {
|
||||
+ builder.put("SPACK_CC_RPATH_ARG", spack_cc_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cxx_rpath_arg = System.getenv("SPACK_CXX_RPATH_ARG");
|
||||
+ if (spack_cxx_rpath_arg != null) {
|
||||
+ builder.put("SPACK_CXX_RPATH_ARG", spack_cxx_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_f77_rpath_arg = System.getenv("SPACK_F77_RPATH_ARG");
|
||||
+ if (spack_f77_rpath_arg != null) {
|
||||
+ builder.put("SPACK_F77_RPATH_ARG", spack_f77_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fc_rpath_arg = System.getenv("SPACK_FC_RPATH_ARG");
|
||||
+ if (spack_fc_rpath_arg != null) {
|
||||
+ builder.put("SPACK_FC_RPATH_ARG", spack_fc_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_short_spec = System.getenv("SPACK_SHORT_SPEC");
|
||||
+ if (spack_short_spec != null) {
|
||||
+ builder.put("SPACK_SHORT_SPEC", spack_short_spec);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cc = System.getenv("SPACK_CC");
|
||||
+ if (spack_cc != null) {
|
||||
+ builder.put("SPACK_CC", spack_cc);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cxx = System.getenv("SPACK_CXX");
|
||||
+ if (spack_cxx != null) {
|
||||
+ builder.put("SPACK_CXX", spack_cxx);
|
||||
+ }
|
||||
+
|
||||
+ String spack_f77 = System.getenv("SPACK_F77");
|
||||
+ if (spack_f77 != null) {
|
||||
+ builder.put("SPACK_F77", spack_f77);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fc = System.getenv("SPACK_FC");
|
||||
+ if (spack_fc != null) {
|
||||
+ builder.put("SPACK_FC", spack_fc);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cflags = System.getenv("SPACK_CFLAGS");
|
||||
+ if (spack_cflags != null) {
|
||||
+ builder.put("SPACK_CFLAGS", spack_cflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cxxflags = System.getenv("SPACK_CXXFLAGS");
|
||||
+ if (spack_cxxflags != null) {
|
||||
+ builder.put("SPACK_CXXFLAGS", spack_cxxflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fcflags = System.getenv("SPACK_FCFLAGS");
|
||||
+ if (spack_fcflags != null) {
|
||||
+ builder.put("SPACK_FCFLAGS", spack_fcflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fflags = System.getenv("SPACK_FFLAGS");
|
||||
+ if (spack_fflags != null) {
|
||||
+ builder.put("SPACK_FFLAGS", spack_fflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_ldflags = System.getenv("SPACK_LDFLAGS");
|
||||
+ if (spack_ldflags != null) {
|
||||
+ builder.put("SPACK_LDFLAGS", spack_ldflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_ldlibs = System.getenv("SPACK_LDLIBS");
|
||||
+ if (spack_ldlibs != null) {
|
||||
+ builder.put("SPACK_LDLIBS", spack_ldlibs);
|
||||
+ }
|
||||
+
|
||||
+ String spack_debug = System.getenv("SPACK_DEBUG");
|
||||
+ if (spack_debug != null) {
|
||||
+ builder.put("SPACK_DEBUG", spack_debug);
|
||||
+ }
|
||||
+
|
||||
+ String spack_test_command = System.getenv("SPACK_TEST_COMMAND");
|
||||
+ if (spack_test_command != null) {
|
||||
+ builder.put("SPACK_TEST_COMMAND", spack_test_command);
|
||||
+ }
|
||||
+
|
||||
+ String spack_dependencies = System.getenv("SPACK_DEPENDENCIES");
|
||||
+ if (spack_dependencies != null) {
|
||||
+ builder.put("SPACK_DEPENDENCIES", spack_dependencies);
|
||||
+ }
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1,124 +0,0 @@
|
||||
diff -pu bazel-0.3.1/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelConfiguration.java bazel-0.3.1/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelConfiguration.java
|
||||
--- bazel-0.3.1/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelConfiguration.java 2016-09-14 11:56:01.565756979 +0200
|
||||
+++ bazel-0.3.1/src/main/java/com/google/devtools/build/lib/bazel/rules/BazelConfiguration.java 2016-09-14 12:04:13.292839801 +0200
|
||||
@@ -92,5 +92,120 @@ public class BazelConfiguration extends
|
||||
if (tmpdir != null) {
|
||||
builder.put("TMPDIR", tmpdir);
|
||||
}
|
||||
+
|
||||
+ String spack_prefix = System.getenv("SPACK_PREFIX");
|
||||
+ if (spack_prefix != null) {
|
||||
+ builder.put("SPACK_PREFIX", spack_prefix);
|
||||
+ }
|
||||
+
|
||||
+ String spack_env_path = System.getenv("SPACK_ENV_PATH");
|
||||
+ if (spack_env_path != null) {
|
||||
+ builder.put("SPACK_ENV_PATH", spack_env_path);
|
||||
+ }
|
||||
+
|
||||
+ String spack_debug_log_id = System.getenv("SPACK_DEBUG_LOG_ID");
|
||||
+ if (spack_debug_log_id != null) {
|
||||
+ builder.put("SPACK_DEBUG_LOG_ID", spack_debug_log_id);
|
||||
+ }
|
||||
+
|
||||
+ String spack_debug_log_dir = System.getenv("SPACK_DEBUG_LOG_DIR");
|
||||
+ if (spack_debug_log_dir != null) {
|
||||
+ builder.put("SPACK_DEBUG_LOG_DIR", spack_debug_log_dir);
|
||||
+ }
|
||||
+
|
||||
+ String spack_compiler_spec = System.getenv("SPACK_COMPILER_SPEC");
|
||||
+ if (spack_compiler_spec != null) {
|
||||
+ builder.put("SPACK_COMPILER_SPEC", spack_compiler_spec);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cc_rpath_arg = System.getenv("SPACK_CC_RPATH_ARG");
|
||||
+ if (spack_cc_rpath_arg != null) {
|
||||
+ builder.put("SPACK_CC_RPATH_ARG", spack_cc_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cxx_rpath_arg = System.getenv("SPACK_CXX_RPATH_ARG");
|
||||
+ if (spack_cxx_rpath_arg != null) {
|
||||
+ builder.put("SPACK_CXX_RPATH_ARG", spack_cxx_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_f77_rpath_arg = System.getenv("SPACK_F77_RPATH_ARG");
|
||||
+ if (spack_f77_rpath_arg != null) {
|
||||
+ builder.put("SPACK_F77_RPATH_ARG", spack_f77_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fc_rpath_arg = System.getenv("SPACK_FC_RPATH_ARG");
|
||||
+ if (spack_fc_rpath_arg != null) {
|
||||
+ builder.put("SPACK_FC_RPATH_ARG", spack_fc_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_short_spec = System.getenv("SPACK_SHORT_SPEC");
|
||||
+ if (spack_short_spec != null) {
|
||||
+ builder.put("SPACK_SHORT_SPEC", spack_short_spec);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cc = System.getenv("SPACK_CC");
|
||||
+ if (spack_cc != null) {
|
||||
+ builder.put("SPACK_CC", spack_cc);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cxx = System.getenv("SPACK_CXX");
|
||||
+ if (spack_cxx != null) {
|
||||
+ builder.put("SPACK_CXX", spack_cxx);
|
||||
+ }
|
||||
+
|
||||
+ String spack_f77 = System.getenv("SPACK_F77");
|
||||
+ if (spack_f77 != null) {
|
||||
+ builder.put("SPACK_F77", spack_f77);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fc = System.getenv("SPACK_FC");
|
||||
+ if (spack_fc != null) {
|
||||
+ builder.put("SPACK_FC", spack_fc);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cflags = System.getenv("SPACK_CFLAGS");
|
||||
+ if (spack_cflags != null) {
|
||||
+ builder.put("SPACK_CFLAGS", spack_cflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cxxflags = System.getenv("SPACK_CXXFLAGS");
|
||||
+ if (spack_cxxflags != null) {
|
||||
+ builder.put("SPACK_CXXFLAGS", spack_cxxflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fcflags = System.getenv("SPACK_FCFLAGS");
|
||||
+ if (spack_fcflags != null) {
|
||||
+ builder.put("SPACK_FCFLAGS", spack_fcflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fflags = System.getenv("SPACK_FFLAGS");
|
||||
+ if (spack_fflags != null) {
|
||||
+ builder.put("SPACK_FFLAGS", spack_fflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_ldflags = System.getenv("SPACK_LDFLAGS");
|
||||
+ if (spack_ldflags != null) {
|
||||
+ builder.put("SPACK_LDFLAGS", spack_ldflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_ldlibs = System.getenv("SPACK_LDLIBS");
|
||||
+ if (spack_ldlibs != null) {
|
||||
+ builder.put("SPACK_LDLIBS", spack_ldlibs);
|
||||
+ }
|
||||
+
|
||||
+ String spack_debug = System.getenv("SPACK_DEBUG");
|
||||
+ if (spack_debug != null) {
|
||||
+ builder.put("SPACK_DEBUG", spack_debug);
|
||||
+ }
|
||||
+
|
||||
+ String spack_test_command = System.getenv("SPACK_TEST_COMMAND");
|
||||
+ if (spack_test_command != null) {
|
||||
+ builder.put("SPACK_TEST_COMMAND", spack_test_command);
|
||||
+ }
|
||||
+
|
||||
+ String spack_dependencies = System.getenv("SPACK_DEPENDENCIES");
|
||||
+ if (spack_dependencies != null) {
|
||||
+ builder.put("SPACK_DEPENDENCIES", spack_dependencies);
|
||||
+ }
|
||||
}
|
||||
}
|
||||
@@ -1,138 +0,0 @@
|
||||
--- bazel-0.3.1/src/main/java/com/google/devtools/build/lib/rules/cpp/CppLinkAction.java 2016-07-29 10:22:16.000000000 +0200
|
||||
+++ bazel-0.3.1/src/main/java/com/google/devtools/build/lib/rules/cpp/CppLinkAction.java 2016-10-13 15:21:35.036617890 +0200
|
||||
@@ -214,6 +214,135 @@
|
||||
.getParentDirectory()
|
||||
.getPathString());
|
||||
}
|
||||
+
|
||||
+ String path = System.getenv("PATH");
|
||||
+ result.put("PATH", path == null ? "/bin:/usr/bin" : path);
|
||||
+
|
||||
+ String ldLibraryPath = System.getenv("LD_LIBRARY_PATH");
|
||||
+ if (ldLibraryPath != null) {
|
||||
+ result.put("LD_LIBRARY_PATH", ldLibraryPath);
|
||||
+ }
|
||||
+
|
||||
+ String tmpdir = System.getenv("TMPDIR");
|
||||
+ if (tmpdir != null) {
|
||||
+ result.put("TMPDIR", tmpdir);
|
||||
+ }
|
||||
+
|
||||
+ String spack_prefix = System.getenv("SPACK_PREFIX");
|
||||
+ if (spack_prefix != null) {
|
||||
+ result.put("SPACK_PREFIX", spack_prefix);
|
||||
+ }
|
||||
+
|
||||
+ String spack_env_path = System.getenv("SPACK_ENV_PATH");
|
||||
+ if (spack_env_path != null) {
|
||||
+ result.put("SPACK_ENV_PATH", spack_env_path);
|
||||
+ }
|
||||
+
|
||||
+ String spack_debug_log_id = System.getenv("SPACK_DEBUG_LOG_ID");
|
||||
+ if (spack_debug_log_id != null) {
|
||||
+ result.put("SPACK_DEBUG_LOG_ID", spack_debug_log_id);
|
||||
+ }
|
||||
+
|
||||
+ String spack_debug_log_dir = System.getenv("SPACK_DEBUG_LOG_DIR");
|
||||
+ if (spack_debug_log_dir != null) {
|
||||
+ result.put("SPACK_DEBUG_LOG_DIR", spack_debug_log_dir);
|
||||
+ }
|
||||
+
|
||||
+ String spack_compiler_spec = System.getenv("SPACK_COMPILER_SPEC");
|
||||
+ if (spack_compiler_spec != null) {
|
||||
+ result.put("SPACK_COMPILER_SPEC", spack_compiler_spec);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cc_rpath_arg = System.getenv("SPACK_CC_RPATH_ARG");
|
||||
+ if (spack_cc_rpath_arg != null) {
|
||||
+ result.put("SPACK_CC_RPATH_ARG", spack_cc_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cxx_rpath_arg = System.getenv("SPACK_CXX_RPATH_ARG");
|
||||
+ if (spack_cxx_rpath_arg != null) {
|
||||
+ result.put("SPACK_CXX_RPATH_ARG", spack_cxx_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_f77_rpath_arg = System.getenv("SPACK_F77_RPATH_ARG");
|
||||
+ if (spack_f77_rpath_arg != null) {
|
||||
+ result.put("SPACK_F77_RPATH_ARG", spack_f77_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fc_rpath_arg = System.getenv("SPACK_FC_RPATH_ARG");
|
||||
+ if (spack_fc_rpath_arg != null) {
|
||||
+ result.put("SPACK_FC_RPATH_ARG", spack_fc_rpath_arg);
|
||||
+ }
|
||||
+
|
||||
+ String spack_short_spec = System.getenv("SPACK_SHORT_SPEC");
|
||||
+ if (spack_short_spec != null) {
|
||||
+ result.put("SPACK_SHORT_SPEC", spack_short_spec);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cc = System.getenv("SPACK_CC");
|
||||
+ if (spack_cc != null) {
|
||||
+ result.put("SPACK_CC", spack_cc);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cxx = System.getenv("SPACK_CXX");
|
||||
+ if (spack_cxx != null) {
|
||||
+ result.put("SPACK_CXX", spack_cxx);
|
||||
+ }
|
||||
+
|
||||
+ String spack_f77 = System.getenv("SPACK_F77");
|
||||
+ if (spack_f77 != null) {
|
||||
+ result.put("SPACK_F77", spack_f77);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fc = System.getenv("SPACK_FC");
|
||||
+ if (spack_fc != null) {
|
||||
+ result.put("SPACK_FC", spack_fc);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cflags = System.getenv("SPACK_CFLAGS");
|
||||
+ if (spack_cflags != null) {
|
||||
+ result.put("SPACK_CFLAGS", spack_cflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_cxxflags = System.getenv("SPACK_CXXFLAGS");
|
||||
+ if (spack_cxxflags != null) {
|
||||
+ result.put("SPACK_CXXFLAGS", spack_cxxflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fcflags = System.getenv("SPACK_FCFLAGS");
|
||||
+ if (spack_fcflags != null) {
|
||||
+ result.put("SPACK_FCFLAGS", spack_fcflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_fflags = System.getenv("SPACK_FFLAGS");
|
||||
+ if (spack_fflags != null) {
|
||||
+ result.put("SPACK_FFLAGS", spack_fflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_ldflags = System.getenv("SPACK_LDFLAGS");
|
||||
+ if (spack_ldflags != null) {
|
||||
+ result.put("SPACK_LDFLAGS", spack_ldflags);
|
||||
+ }
|
||||
+
|
||||
+ String spack_ldlibs = System.getenv("SPACK_LDLIBS");
|
||||
+ if (spack_ldlibs != null) {
|
||||
+ result.put("SPACK_LDLIBS", spack_ldlibs);
|
||||
+ }
|
||||
+
|
||||
+ String spack_debug = System.getenv("SPACK_DEBUG");
|
||||
+ if (spack_debug != null) {
|
||||
+ result.put("SPACK_DEBUG", spack_debug);
|
||||
+ }
|
||||
+
|
||||
+ String spack_test_command = System.getenv("SPACK_TEST_COMMAND");
|
||||
+ if (spack_test_command != null) {
|
||||
+ result.put("SPACK_TEST_COMMAND", spack_test_command);
|
||||
+ }
|
||||
+
|
||||
+ String spack_dependencies = System.getenv("SPACK_DEPENDENCIES");
|
||||
+ if (spack_dependencies != null) {
|
||||
+ result.put("SPACK_DEPENDENCIES", spack_dependencies);
|
||||
+ }
|
||||
+
|
||||
return result.build();
|
||||
}
|
||||
|
||||
@@ -3,93 +3,173 @@
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
import inspect
|
||||
|
||||
from spack import *
|
||||
from multiprocessing import cpu_count
|
||||
from spack.util.environment import env_flag
|
||||
from spack.build_environment import SPACK_NO_PARALLEL_MAKE
|
||||
|
||||
|
||||
class Bazel(Package):
|
||||
"""Bazel is Google's own build tool"""
|
||||
"""Bazel is an open-source build and test tool similar to Make, Maven, and
|
||||
Gradle. It uses a human-readable, high-level build language. Bazel supports
|
||||
projects in multiple languages and builds outputs for multiple platforms.
|
||||
Bazel supports large codebases across multiple repositories, and large
|
||||
numbers of users."""
|
||||
|
||||
homepage = "https://www.bazel.io"
|
||||
url = "https://github.com/bazelbuild/bazel/releases/download/0.11.1/bazel-0.11.1-dist.zip"
|
||||
homepage = "https://bazel.build/"
|
||||
url = "https://github.com/bazelbuild/bazel/releases/download/1.2.0/bazel-1.2.0-dist.zip"
|
||||
|
||||
maintainers = ['adamjstewart']
|
||||
|
||||
version('1.2.1', sha256='255da49d0f012bc4f2c1d6d3ccdbe578e22fe97b8d124e1629a486fe2a09d3e1')
|
||||
version('1.2.0', sha256='9cb46b0a18b9166730307a0e82bf4c02281a1cc6da0fb11239e6fe4147bdee6e')
|
||||
version('1.1.0', sha256='4b66a8c93af7832ed32e7236cf454a05f3aa06d25a8576fc3f83114f142f95ab')
|
||||
version('1.0.1', sha256='f4d2dfad011ff03a5fae41b9b02cd96cd7297c1205d496603d66516934fbcfee')
|
||||
version('1.0.0', sha256='c61daf0b69dd95205c695b2f9022d296d052c727062cfd396d54ffb2154f8cac')
|
||||
version('0.29.1', sha256='872a52cff208676e1169b3e1cae71b1fe572c4109cbd66eab107d8607c378de5')
|
||||
version('0.29.0', sha256='01cb6f2e808bd016cf0e217e12373c9efb808123e58b37885be8364458d3a40a')
|
||||
version('0.28.1', sha256='2cea463d611f5255d2f3d41c8de5dcc0961adccb39cf0ac036f07070ba720314')
|
||||
version('0.28.0', sha256='26ad8cdadd413b8432cf46d9fc3801e8db85d9922f85dd8a7f5a92fec876557f')
|
||||
version('0.27.2', sha256='5e1bf2b48e54eb7e518430667d29aef53695d6dd7c718665a52131ab27aadab2')
|
||||
version('0.27.1', sha256='8051d77da4ec338acd91770f853e4c25f4407115ed86fd35a6de25921673e779')
|
||||
version('0.27.0', sha256='c3080d3b959ac08502ad5c84a51608c291accb1481baad88a628bbf79b30c67a')
|
||||
version('0.26.1', sha256='c0e94f8f818759f3f67af798c38683520c540f469cb41aea8f5e5a0e43f11600')
|
||||
version('0.26.0', sha256='d26dadf62959255d58e523da3448a6222af768fe1224e321b120c1d5bbe4b4f2')
|
||||
version('0.25.3', sha256='23eafd3e439bc71baba9c592b52cb742dabc8640a13b9da1751fec090a2dda99')
|
||||
version('0.25.2', sha256='7456032199852c043e6c5b3e4c71dd8089c1158f72ec554e6ec1c77007f0ab51')
|
||||
version('0.25.1', sha256='a52bb31aeb1f821e649d25ef48023cfb54a12887aff875c6349ebcac36c2f056')
|
||||
version('0.25.0', sha256='f624fe9ca8d51de192655369ac538c420afb7cde16e1ad052554b582fff09287')
|
||||
version('0.24.1', sha256='56ea1b199003ad832813621744178e42b39e6206d34fbae342562c287da0cd54')
|
||||
version('0.24.0', sha256='621d2a97899a88850a913eabf9285778331a309fd4658b225b1377f80060fa85')
|
||||
version('0.23.2', sha256='293a5a7d851e0618eeb5e6958d94a11d45b6a00f2ba9376de61ac2bd5f917439')
|
||||
version('0.23.1', sha256='dd47199f92452bf67b2c5d60ad4b7143554eaf2c6196ab6e8713449d81a0491d')
|
||||
version('0.23.0', sha256='2daf9c2c6498836ed4ebae7706abb809748b1350cacd35b9f89452f31ac0acc1')
|
||||
version('0.22.0', sha256='6860a226c8123770b122189636fb0c156c6e5c9027b5b245ac3b2315b7b55641')
|
||||
version('0.21.0', sha256='6ccb831e683179e0cfb351cb11ea297b4db48f9eab987601c038aa0f83037db4')
|
||||
version('0.20.0', sha256='1945afa84fd8858b0a3c68c09915a4bc81065c61df2591387b2985e2297d30bd')
|
||||
version('0.19.2', sha256='11234cce4f6bdc62c3ac688f41c7b5c178eecb6f7e2c4ba0bcf00ba8565b1d19')
|
||||
version('0.19.1', sha256='c9405f7b8c79ebc81f9f0e49bb656df4a0da246771d010c2cdd6bb30e2500ac0')
|
||||
version('0.19.0', sha256='ee6135c5c47306c8421d43ad83aabc4f219cb065376ee37797f2c8ba9a615315')
|
||||
version('0.18.1', sha256='baed9f28c317000a4ec1ad2571b3939356d22746ca945ac2109148d7abb860d4')
|
||||
version('0.18.0', sha256='d0e86d2f7881ec8742a9823a986017452d2da0dfe4e989111da787cb89257155')
|
||||
version('0.17.2', sha256='b6e87acfa0a405bb8b3417c58477b66d5bc27dc0d31ba6fa12bc255b9278d33b')
|
||||
version('0.17.1', sha256='23e4281c3628cbd746da3f51330109bbf69780bd64461b63b386efae37203f20')
|
||||
version('0.16.1', sha256='09c66b94356c82c52f212af52a81ac28eb06de1313755a2f23eeef84d167b36c')
|
||||
version('0.16.0', sha256='c730593916ef0ba62f3d113cc3a268e45f7e8039daf7b767c8641b6999bd49b1')
|
||||
version('0.15.2', sha256='bf53ec73be3a6d412d85ef612cec6e9c85db45da42001fab0cf1dad44cfc03f1')
|
||||
version('0.15.1', sha256='c62b351fa4c1ba5aeb34d0a137176f8e8f1d89a32f548a10e96c11df176ffc6c')
|
||||
version('0.15.0', sha256='c3b716e6625e6b8c323350c95cd3ae0f56aeb00458dddd10544d5bead8a7b602')
|
||||
version('0.14.1', sha256='d49cdcd82618ae7a7a190e6f0a80d9bf85c1a66b732f994f37732dc14ffb0025')
|
||||
version('0.14.0', sha256='259627de8b9d415cc80904523facf3d50e6e8e68448ab968eb1c9cb8ca1ef843')
|
||||
version('0.13.1', sha256='b0269e75b40d87ff87886e5f3432cbf88f70c96f907ab588e6c21b2922d72db0')
|
||||
version('0.13.0', sha256='82e9035084660b9c683187618a29aa896f8b05b5f16ae4be42a80b5e5b6a7690')
|
||||
version('0.12.0', sha256='3b3e7dc76d145046fdc78db7cac9a82bc8939d3b291e53a7ce85315feb827754')
|
||||
version('0.11.1', sha256='e8d762bcc01566fa50952c8028e95cfbe7545a39b8ceb3a0d0d6df33b25b333f')
|
||||
version('0.11.0', sha256='abfeccc94728cb46be8dbb3507a23ccffbacef9fbda96a977ef4ea8d6ab0d384')
|
||||
version('0.10.1', sha256='708248f6d92f2f4d6342006c520f22dffa2f8adb0a9dc06a058e3effe7fee667')
|
||||
version('0.10.0', sha256='47e0798caaac4df499bce5fe554a914abd884a855a27085a4473de1d737d9548')
|
||||
version('0.9.0', sha256='efb28fed4ffcfaee653e0657f6500fc4cbac61e32104f4208da385676e76312a')
|
||||
version('0.4.5', sha256='2b737be42678900470ae9e48c975ac5b2296d9ae23c007bf118350dbe7c0552b')
|
||||
version('0.4.4', sha256='d52a21dda271ae645711ce99c70cf44c5d3a809138e656bbff00998827548ebb')
|
||||
version('0.9.0', sha256='efb28fed4ffcfaee653e0657f6500fc4cbac61e32104f4208da385676e76312a')
|
||||
version('0.8.1', sha256='dfd0761e0b7e36c1d74c928ad986500c905be5ebcfbc29914d574af1db7218cf')
|
||||
version('0.8.0', sha256='aa840321d056abd3c6be10c4a1e98a64f9f73fff9aa89c468dae8c003974a078')
|
||||
version('0.7.0', sha256='a084a9c5d843e2343bf3f319154a48abe3d35d52feb0ad45dec427a1c4ffc416')
|
||||
version('0.6.1', sha256='dada1f60a512789747011184b2767d2b44136ef3b036d86947f1896d200d2ba7')
|
||||
version('0.6.0', sha256='a0e53728a9541ef87934831f3d05f2ccfdc3b8aeffe3e037be2b92b12400598e')
|
||||
version('0.5.4', sha256='2157b05309614d6af0e4bbc6065987aede590822634a0522161f3af5d647abc9')
|
||||
version('0.5.3', sha256='76b5c5880a0b15f5b91f7d626c5bc3b76ce7e5d21456963c117ab711bf1c5333')
|
||||
version('0.5.2', sha256='2418c619bdd44257a170b85b9d2ecb75def29e751b725e27186468ada2e009ea')
|
||||
version('0.5.1', sha256='85e6a18b111afeea2e475fe991db2a441ec3824211d659bee7b0012c36be9a40')
|
||||
version('0.5.0', sha256='ebba7330a8715e96a6d6dc0aa085125d529d0740d788f0544c6169d892e4f861')
|
||||
version('0.4.5', sha256='2b737be42678900470ae9e48c975ac5b2296d9ae23c007bf118350dbe7c0552b')
|
||||
version('0.4.4', sha256='d52a21dda271ae645711ce99c70cf44c5d3a809138e656bbff00998827548ebb')
|
||||
version('0.4.3', sha256='cbd2ab580181c17317cf18b2bf825bcded2d97cab01cd5b5fe4f4d520b64f90f')
|
||||
version('0.4.2', sha256='8e6f41252abadcdb2cc7a07f910ec4b45fb12c46f0a578672c6a186c7efcdb36')
|
||||
version('0.4.1', sha256='008c648d3c46ece063ae8b5008480d8ae6d359d35967356685d1c09da07e1064')
|
||||
version('0.4.0', sha256='6474714eee72ba2d4e271ed00ce8c05d67a9d15327bc03962b821b2af2c5ca36')
|
||||
version('0.3.2', sha256='ca5caf7b2b48c7639f45d815b32e76d69650f3199eb8caa541d402722e3f6c10')
|
||||
version('0.3.1', sha256='218d0e28b4d1ee34585f2ac6b18d169c81404d93958815e73e60cc0368efcbb7')
|
||||
version('0.3.0', sha256='357fd8bdf86034b93902616f0844bd52e9304cccca22971ab7007588bf9d5fb3')
|
||||
|
||||
depends_on('java@8:', type=('build', 'link', 'run'))
|
||||
depends_on('zip')
|
||||
# https://docs.bazel.build/versions/master/install-compile-source.html#bootstrap-bazel
|
||||
# Until https://github.com/spack/spack/issues/14058 is fixed, use jdk to build bazel
|
||||
# Strict dependency on java@8 as per
|
||||
# https://docs.bazel.build/versions/master/install-compile-source.html#bootstrap-unix-prereq
|
||||
depends_on('jdk@1.8.0:1.8.999', type=('build', 'run'))
|
||||
depends_on('python', type=('build', 'run'))
|
||||
|
||||
patch('fix_env_handling.patch', when='@:0.4.5')
|
||||
patch('fix_env_handling-0.9.0.patch', when='@0.9.0:0.12.0')
|
||||
patch('fix_env_handling-0.13.0.patch', when='@0.13.0:0.13.999')
|
||||
patch('fix_env_handling-0.17.2.patch', when='@0.14.0:')
|
||||
patch('link.patch')
|
||||
patch('cc_configure.patch', when='@:0.4.5')
|
||||
patch('unix_cc_configure.patch', when='@0.9.0')
|
||||
patch('unix_cc_configure-0.10.0.patch', when='@0.10.0:0.14.999')
|
||||
patch('unix_cc_configure-0.17.2.patch', when='@0.15.0:')
|
||||
# Pass Spack environment variables to the build
|
||||
patch('bazelruleclassprovider-0.25.patch', when='@0.25:')
|
||||
patch('bazelruleclassprovider-0.14.patch', when='@0.14:0.24')
|
||||
patch('bazelconfiguration-0.3.patch', when='@:0.13')
|
||||
|
||||
# Inject include paths
|
||||
patch('unix_cc_configure-0.15.patch', when='@0.15:')
|
||||
patch('unix_cc_configure-0.10.patch', when='@0.10:0.14')
|
||||
patch('unix_cc_configure-0.5.3.patch', when='@0.5.3:0.9')
|
||||
patch('cc_configure-0.5.0.patch', when='@0.5.0:0.5.2')
|
||||
patch('cc_configure-0.3.0.patch', when='@:0.4')
|
||||
|
||||
# Set CC and CXX
|
||||
patch('compile-0.29.patch', when='@0.29:')
|
||||
patch('compile-0.21.patch', when='@0.21:0.28')
|
||||
patch('compile-0.16.patch', when='@0.16:0.20')
|
||||
patch('compile-0.13.patch', when='@0.13:0.15')
|
||||
patch('compile-0.9.patch', when='@0.9:0.12')
|
||||
patch('compile-0.6.patch', when='@0.6:0.8')
|
||||
patch('compile-0.4.patch', when='@0.4:0.5')
|
||||
patch('compile-0.3.patch', when='@:0.3')
|
||||
|
||||
phases = ['bootstrap', 'install']
|
||||
|
||||
def url_for_version(self, version):
|
||||
if version >= Version('0.4.1'):
|
||||
return 'https://github.com/bazelbuild/bazel/releases/download/{0}/bazel-{0}-dist.zip'.format(version)
|
||||
url = 'https://github.com/bazelbuild/bazel/releases/download/{0}/bazel-{0}-dist.zip'
|
||||
else:
|
||||
return 'https://github.com/bazelbuild/bazel/archive/{0}.tar.gz'.format(version)
|
||||
url = 'https://github.com/bazelbuild/bazel/archive/{0}.tar.gz'
|
||||
|
||||
return url.format(version)
|
||||
|
||||
def setup_build_environment(self, env):
|
||||
env.set('EXTRA_BAZEL_ARGS',
|
||||
# Spack's logs don't handle colored output well
|
||||
'--color=no --host_javabase=@local_jdk//:jdk')
|
||||
|
||||
def bootstrap(self, spec, prefix):
|
||||
bash = which('bash')
|
||||
bash('./compile.sh')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
bash = which('bash')
|
||||
bash('-c', './compile.sh')
|
||||
mkdir(prefix.bin)
|
||||
install('output/bazel', prefix.bin)
|
||||
|
||||
@run_after('install')
|
||||
@on_package_attributes(run_tests=True)
|
||||
def test(self):
|
||||
# https://github.com/Homebrew/homebrew-core/blob/master/Formula/bazel.rb
|
||||
|
||||
# Bazel does not work properly on NFS, switch to /tmp
|
||||
with working_dir('/tmp/spack/bazel/spack-test', create=True):
|
||||
touch('WORKSPACE')
|
||||
|
||||
with open('ProjectRunner.java', 'w') as f:
|
||||
f.write("""\
|
||||
public class ProjectRunner {
|
||||
public static void main(String args[]) {
|
||||
System.out.println("Hi!");
|
||||
}
|
||||
}""")
|
||||
|
||||
with open('BUILD', 'w') as f:
|
||||
f.write("""\
|
||||
java_binary(
|
||||
name = "bazel-test",
|
||||
srcs = glob(["*.java"]),
|
||||
main_class = "ProjectRunner",
|
||||
)""")
|
||||
|
||||
# Spack's logs don't handle colored output well
|
||||
bazel = Executable(self.prefix.bin.bazel)
|
||||
bazel('--output_user_root=/tmp/spack/bazel/spack-test',
|
||||
'build', '--color=no', '//:bazel-test')
|
||||
|
||||
exe = Executable('bazel-bin/bazel-test')
|
||||
assert exe(output=str) == 'Hi!\n'
|
||||
|
||||
def setup_dependent_package(self, module, dependent_spec):
|
||||
class BazelExecutable(Executable):
|
||||
"""Special callable executable object for bazel so the user can
|
||||
specify parallel or not on a per-invocation basis. Using
|
||||
'parallel' as a kwarg will override whatever the package's
|
||||
global setting is, so you can either default to true or false
|
||||
and override particular calls.
|
||||
|
||||
Note that if the SPACK_NO_PARALLEL_MAKE env var is set it
|
||||
overrides everything.
|
||||
"""
|
||||
|
||||
def __init__(self, name, command, jobs):
|
||||
super(BazelExecutable, self).__init__(name)
|
||||
self.bazel_command = command
|
||||
self.jobs = jobs
|
||||
|
||||
def __call__(self, *args, **kwargs):
|
||||
disable = env_flag(SPACK_NO_PARALLEL_MAKE)
|
||||
parallel = ((not disable) and kwargs.get('parallel',
|
||||
self.jobs > 1))
|
||||
|
||||
jobs = "--jobs=1"
|
||||
if parallel:
|
||||
jobs = "--jobs=%d" % self.jobs
|
||||
|
||||
args = (self.bazel_command,) + (jobs,) + args
|
||||
|
||||
return super(BazelExecutable, self).__call__(*args, **kwargs)
|
||||
|
||||
jobs = cpu_count()
|
||||
dependent_module = inspect.getmodule(dependent_spec.package)
|
||||
if not dependent_spec.package.parallel:
|
||||
jobs = 1
|
||||
elif dependent_module.make_jobs:
|
||||
jobs = dependent_module.make_jobs
|
||||
module.bazel = BazelExecutable('bazel', 'build', jobs)
|
||||
module.bazel = Executable('bazel')
|
||||
|
||||
@@ -1,6 +1,4 @@
|
||||
diff --git a/tools/cpp/unix_cc_configure.bzl.orig b/tools/cpp/unix_cc_configure.bzl
|
||||
index f67b9b5..cc952e0 100755
|
||||
--- a/tools/cpp/unix_cc_configure.bzl.orig
|
||||
--- a/tools/cpp/unix_cc_configure.bzl
|
||||
+++ b/tools/cpp/unix_cc_configure.bzl
|
||||
@@ -147,9 +147,18 @@ def get_escaped_cxx_inc_directories(repository_ctx, cc, additional_flags = []):
|
||||
else:
|
||||
@@ -12,14 +10,13 @@ index f67b9b5..cc952e0 100755
|
||||
+ _prepare_include_path(repository_ctx, _cxx_inc_convert(p))
|
||||
+ for p in inc_dirs.split("\n")
|
||||
+ ]
|
||||
|
||||
+
|
||||
+ env = repository_ctx.os.environ
|
||||
+ if "SPACK_DEPENDENCIES" in env:
|
||||
+ for dep in env["SPACK_DEPENDENCIES"].split(":"):
|
||||
+ path = dep + "/include"
|
||||
+ if "SPACK_INCLUDE_DIRS" in env:
|
||||
+ for path in env["SPACK_INCLUDE_DIRS"].split(":"):
|
||||
+ default_inc_directories.append(path)
|
||||
+
|
||||
+ return default_inc_directories
|
||||
|
||||
|
||||
def _is_option_supported(repository_ctx, cc, option):
|
||||
"""Checks that `option` is supported by the C compiler. Doesn't %-escape the option."""
|
||||
@@ -1,8 +1,6 @@
|
||||
diff --git a/tools/cpp/unix_cc_configure.bzl b/tools/cpp/unix_cc_configure.bzl
|
||||
index 361931b..a79129b 100755
|
||||
--- a/tools/cpp/unix_cc_configure.bzl
|
||||
+++ b/tools/cpp/unix_cc_configure.bzl
|
||||
@@ -145,11 +145,19 @@ def get_escaped_cxx_inc_directories(repository_ctx, cc, lang_flag, additional_fl
|
||||
@@ -145,11 +145,18 @@ def get_escaped_cxx_inc_directories(repository_ctx, cc, lang_flag, additional_fl
|
||||
else:
|
||||
inc_dirs = result.stderr[index1 + 1:index2].strip()
|
||||
|
||||
@@ -13,9 +11,8 @@ index 361931b..a79129b 100755
|
||||
]
|
||||
|
||||
+ env = repository_ctx.os.environ
|
||||
+ if "SPACK_DEPENDENCIES" in env:
|
||||
+ for dep in env["SPACK_DEPENDENCIES"].split(":"):
|
||||
+ path = dep + "/include"
|
||||
+ if "SPACK_INCLUDE_DIRS" in env:
|
||||
+ for path in env["SPACK_INCLUDE_DIRS"].split(":"):
|
||||
+ default_inc_directories.append(path)
|
||||
+
|
||||
+ return default_inc_directories
|
||||
@@ -1,10 +1,6 @@
|
||||
diff --git a/spack-expanded-archive/tools/cpp/unix_cc_configure.bzl.orig b/spack-expanded-archive/tools/cpp/unix_cc_configure.bzl
|
||||
old mode 100644
|
||||
new mode 100755
|
||||
index aa46f55..ae3c689
|
||||
--- spack-expanded-archive/tools/cpp/unix_cc_configure.bzl
|
||||
+++ spack-expanded-archive/tools/cpp/unix_cc_configure.bzl
|
||||
@@ -117,9 +117,23 @@ def get_escaped_cxx_inc_directories(repository_ctx, cc):
|
||||
--- a/tools/cpp/unix_cc_configure.bzl
|
||||
+++ b/tools/cpp/unix_cc_configure.bzl
|
||||
@@ -117,9 +117,19 @@ def get_escaped_cxx_inc_directories(repository_ctx, cc):
|
||||
else:
|
||||
inc_dirs = result.stderr[index1 + 1:index2].strip()
|
||||
|
||||
@@ -16,12 +12,8 @@ index aa46f55..ae3c689
|
||||
+ ]
|
||||
|
||||
+ env = repository_ctx.os.environ
|
||||
+ if "SPACK_DEPENDENCIES" in env:
|
||||
+ for dep in env["SPACK_DEPENDENCIES"].split(":"):
|
||||
+ path = dep + "/include"
|
||||
+ # path = repository_ctx.os.path.join(dep, "include")
|
||||
+ # if not repository_ctx.os.path.exists(path):
|
||||
+ # continue
|
||||
+ if "SPACK_INCLUDE_DIRS" in env:
|
||||
+ for path in env["SPACK_INCLUDE_DIRS"].split(":"):
|
||||
+ default_inc_directories.append(
|
||||
+ repository_ctx.path(_cxx_inc_convert(path))
|
||||
+ )
|
||||
@@ -20,6 +20,6 @@ class Bbmap(Package):
|
||||
def install(self, spec, prefix):
|
||||
install_tree('.', prefix.bin)
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
run_env.set('BBMAP_CONFIG', self.prefix.bin.config)
|
||||
run_env.set('BBMAP_RESOURCES', self.prefix.bin.resources)
|
||||
def setup_run_environment(self, env):
|
||||
env.set('BBMAP_CONFIG', self.prefix.bin.config)
|
||||
env.set('BBMAP_RESOURCES', self.prefix.bin.resources)
|
||||
|
||||
@@ -6,13 +6,13 @@
|
||||
from spack import *
|
||||
|
||||
|
||||
class Bc(AutotoolsPackage):
|
||||
class Bc(AutotoolsPackage, GNUMirrorPackage):
|
||||
"""bc is an arbitrary precision numeric processing language. Syntax is
|
||||
similar to C, but differs in many substantial areas. It supports
|
||||
interactive execution of statements."""
|
||||
|
||||
homepage = "https://www.gnu.org/software/bc"
|
||||
url = "https://ftpmirror.gnu.org/bc/bc-1.07.tar.gz"
|
||||
gnu_mirror_path = "bc/bc-1.07.tar.gz"
|
||||
|
||||
version('1.07', sha256='55cf1fc33a728d7c3d386cc7b0cb556eb5bacf8e0cb5a3fcca7f109fc61205ad')
|
||||
|
||||
|
||||
4
var/spack/repos/builtin/packages/beagle/beagle.sh
Normal file
4
var/spack/repos/builtin/packages/beagle/beagle.sh
Normal file
@@ -0,0 +1,4 @@
|
||||
#!/bin/sh
|
||||
# convenience wrapper for the jar file
|
||||
java $JAVA_ARGS $JAVA_OPTS -jar beagle.jar "$@"
|
||||
|
||||
43
var/spack/repos/builtin/packages/beagle/package.py
Normal file
43
var/spack/repos/builtin/packages/beagle/package.py
Normal file
@@ -0,0 +1,43 @@
|
||||
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
from spack import *
|
||||
import os.path
|
||||
|
||||
|
||||
class Beagle(Package):
|
||||
"""Beagle is a software package for phasing genotypes and for imputing
|
||||
ungenotyped markers."""
|
||||
|
||||
homepage = "http://faculty.washington.edu/browning/beagle/beagle.html"
|
||||
|
||||
version('5.1', sha256='994f926a4ec0eac665631f37c4a961d3f75c966c71841079275364013c90996c',
|
||||
expand=False, url='http://faculty.washington.edu/browning/beagle/beagle.25Nov19.28d.jar')
|
||||
version('5.0', sha256='8390fe18b53786b676b67dddae6d1c086d6225e518f6a82047f4138196b48621',
|
||||
expand=False, url='https://faculty.washington.edu/browning/beagle/beagle.12Jul19.0df.jar')
|
||||
version('4.1', sha256='6c94610b278fc108c3e80b1134226911be1fc92b7d378ba648ac3eb97c5a3207',
|
||||
expand=False, url='https://faculty.washington.edu/browning/beagle/beagle.27Jan18.7e1.jar')
|
||||
|
||||
depends_on('java@8', type='run')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
mkdirp(prefix.bin)
|
||||
jar_file = os.path.basename(self.stage.archive_file)
|
||||
install(jar_file, prefix.bin)
|
||||
|
||||
# Set up a helper script to call java on the jar file,
|
||||
# explicitly codes the path for java and the jar file.
|
||||
script_sh = join_path(os.path.dirname(__file__), "beagle.sh")
|
||||
script = prefix.bin.beagle
|
||||
install(script_sh, script)
|
||||
set_executable(script)
|
||||
|
||||
# Munge the helper script to explicitly point to java and the
|
||||
# jar file.
|
||||
java = self.spec['java'].prefix.bin.java
|
||||
kwargs = {'ignore_absent': False, 'backup': False, 'string': False}
|
||||
filter_file('^java', java, script, **kwargs)
|
||||
filter_file('beagle.jar', join_path(prefix.bin, jar_file),
|
||||
script, **kwargs)
|
||||
@@ -22,8 +22,8 @@ class Beast2(Package):
|
||||
|
||||
depends_on('java')
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
run_env.set('BEAST', self.prefix)
|
||||
def setup_run_environment(self, env):
|
||||
env.set('BEAST', self.prefix)
|
||||
|
||||
def install(self, spec, prefix):
|
||||
install_tree('bin', prefix.bin)
|
||||
|
||||
@@ -12,17 +12,23 @@ class BerkeleyDb(AutotoolsPackage):
|
||||
homepage = "http://www.oracle.com/technetwork/database/database-technologies/berkeleydb/overview/index.html"
|
||||
url = "http://download.oracle.com/berkeley-db/db-5.3.28.tar.gz"
|
||||
|
||||
version('5.3.28', sha256='e0a992d740709892e81f9d93f06daf305cf73fb81b545afe72478043172c3628')
|
||||
version('6.0.35', sha256='24421affa8ae436fe427ae4f5f2d1634da83d3d55a5ad6354a98eeedb825de55')
|
||||
version('6.1.29', sha256='b3c18180e4160d97dd197ba1d37c19f6ea2ec91d31bbfaf8972d99ba097af17d')
|
||||
version('6.2.32', sha256='a9c5e2b004a5777aa03510cfe5cd766a4a3b777713406b02809c17c8e0e7a8fb')
|
||||
version('6.1.29', sha256='b3c18180e4160d97dd197ba1d37c19f6ea2ec91d31bbfaf8972d99ba097af17d')
|
||||
version('6.0.35', sha256='24421affa8ae436fe427ae4f5f2d1634da83d3d55a5ad6354a98eeedb825de55')
|
||||
version('5.3.28', sha256='e0a992d740709892e81f9d93f06daf305cf73fb81b545afe72478043172c3628')
|
||||
|
||||
configure_directory = 'dist'
|
||||
build_directory = 'spack-build'
|
||||
|
||||
def url_for_version(self, version):
|
||||
# newer version need oracle login, so get them from gentoo mirror
|
||||
return 'http://distfiles.gentoo.org/distfiles/db-{0}.tar.gz'.format(version)
|
||||
# TODO: Gentoo's website removed the BerkeleyDB archives.
|
||||
# Please update the function bellow with a valid mirror.
|
||||
# Right now this package will fetch from the Oracle website,
|
||||
# and versions 5.3.28 and 6.0.35 will fail to download.
|
||||
#
|
||||
# def url_for_version(self, version):
|
||||
# # newer version need oracle login, so get them from gentoo mirror
|
||||
# url_fmt = 'http://distfiles.gentoo.org/distfiles/db-{0}.tar.gz'
|
||||
# return url_fmt.format(version)
|
||||
|
||||
def configure_args(self):
|
||||
return ['--disable-static', '--enable-cxx', '--enable-stl']
|
||||
|
||||
21
var/spack/repos/builtin/packages/bind9/package.py
Normal file
21
var/spack/repos/builtin/packages/bind9/package.py
Normal file
@@ -0,0 +1,21 @@
|
||||
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
from spack import *
|
||||
|
||||
|
||||
class Bind9(AutotoolsPackage):
|
||||
"""
|
||||
BIND 9 has evolved to be a very flexible, full-featured DNS system.
|
||||
"""
|
||||
|
||||
homepage = "https://github.com/isc-projects/bind9"
|
||||
url = "https://github.com/isc-projects/bind9/archive/v9_14_6.tar.gz"
|
||||
|
||||
version('9_14_6', sha256='98be7a7b6d614b519f6c8d6ec7a8a39759ae9604d87228d9dc7c034471e5433e')
|
||||
|
||||
def configure_args(self):
|
||||
args = ["--without-python", "--disable-linux-caps"]
|
||||
return args
|
||||
@@ -7,11 +7,11 @@
|
||||
import glob
|
||||
|
||||
|
||||
class Binutils(AutotoolsPackage):
|
||||
class Binutils(AutotoolsPackage, GNUMirrorPackage):
|
||||
"""GNU binutils, which contain the linker, assembler, objdump and others"""
|
||||
|
||||
homepage = "http://www.gnu.org/software/binutils/"
|
||||
url = "https://ftpmirror.gnu.org/binutils/binutils-2.28.tar.bz2"
|
||||
gnu_mirror_path = "binutils/binutils-2.28.tar.bz2"
|
||||
|
||||
version('2.32', sha256='de38b15c902eb2725eac6af21183a5f34ea4634cb0bcef19612b50e5ed31072d')
|
||||
version('2.31.1', sha256='ffcc382695bf947da6135e7436b8ed52d991cf270db897190f19d6f9838564d0')
|
||||
|
||||
@@ -8,13 +8,13 @@
|
||||
import sys
|
||||
|
||||
|
||||
class Bison(AutotoolsPackage):
|
||||
class Bison(AutotoolsPackage, GNUMirrorPackage):
|
||||
"""Bison is a general-purpose parser generator that converts
|
||||
an annotated context-free grammar into a deterministic LR or
|
||||
generalized LR (GLR) parser employing LALR(1) parser tables."""
|
||||
|
||||
homepage = "https://www.gnu.org/software/bison/"
|
||||
url = "https://ftpmirror.gnu.org/bison/bison-3.4.2.tar.gz"
|
||||
gnu_mirror_path = "bison/bison-3.4.2.tar.gz"
|
||||
|
||||
version('3.4.2', sha256='ff3922af377d514eca302a6662d470e857bd1a591e96a2050500df5a9d59facf')
|
||||
version('3.0.5', sha256='cd399d2bee33afa712bac4b1f4434e20379e9b4099bce47189e09a7675a2d566')
|
||||
|
||||
@@ -45,10 +45,7 @@ def install(self, spec, prefix):
|
||||
install_tree('hdf', prefix.hdf)
|
||||
install_tree('pbdata', prefix.pbdata)
|
||||
|
||||
def setup_dependent_environment(self, spack_env, run_env, dependent_spec):
|
||||
spack_env.prepend_path('LD_LIBRARY_PATH',
|
||||
self.spec.prefix.hdf)
|
||||
spack_env.prepend_path('LD_LIBRARY_PATH',
|
||||
self.spec.prefix.alignment)
|
||||
spack_env.prepend_path('LD_LIBRARY_PATH',
|
||||
self.spec.prefix.pbdata)
|
||||
def setup_dependent_build_environment(self, env, dependent_spec):
|
||||
env.prepend_path('LD_LIBRARY_PATH', self.spec.prefix.hdf)
|
||||
env.prepend_path('LD_LIBRARY_PATH', self.spec.prefix.alignment)
|
||||
env.prepend_path('LD_LIBRARY_PATH', self.spec.prefix.pbdata)
|
||||
|
||||
@@ -26,19 +26,19 @@ class Blasr(Package):
|
||||
|
||||
phases = ['configure', 'build', 'install']
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
run_env.prepend_path('PATH', self.spec.prefix.utils)
|
||||
spack_env.prepend_path('CPATH', self.spec['blasr-libcpp'].prefix)
|
||||
spack_env.prepend_path('CPATH', self.spec[
|
||||
'blasr-libcpp'].prefix.pbdata)
|
||||
spack_env.prepend_path('CPATH', self.spec[
|
||||
'blasr-libcpp'].prefix.alignment)
|
||||
spack_env.prepend_path('CPATH', self.spec['blasr-libcpp'].prefix.hdf)
|
||||
def setup_build_environment(self, env):
|
||||
env.prepend_path('CPATH', self.spec['blasr-libcpp'].prefix)
|
||||
env.prepend_path('CPATH', self.spec['blasr-libcpp'].prefix.pbdata)
|
||||
env.prepend_path('CPATH', self.spec['blasr-libcpp'].prefix.alignment)
|
||||
env.prepend_path('CPATH', self.spec['blasr-libcpp'].prefix.hdf)
|
||||
|
||||
# hdf has +mpi by default, so handle that possibility
|
||||
if ('+mpi' in self.spec['hdf5']):
|
||||
spack_env.set('CC', self.spec['mpi'].mpicc)
|
||||
spack_env.set('CXX', self.spec['mpi'].mpicxx)
|
||||
env.set('CC', self.spec['mpi'].mpicc)
|
||||
env.set('CXX', self.spec['mpi'].mpicxx)
|
||||
|
||||
def setup_run_environment(self, env):
|
||||
env.prepend_path('PATH', self.spec.prefix.utils)
|
||||
|
||||
def configure(self, spec, prefix):
|
||||
configure_args = [
|
||||
|
||||
@@ -17,8 +17,8 @@ class Blat(Package):
|
||||
|
||||
depends_on('libpng')
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
spack_env.set('MACHTYPE', 'x86_64')
|
||||
def setup_build_environment(self, env):
|
||||
env.set('MACHTYPE', 'x86_64')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
mkdirp(prefix.bin)
|
||||
|
||||
31
var/spack/repos/builtin/packages/blktrace/package.py
Normal file
31
var/spack/repos/builtin/packages/blktrace/package.py
Normal file
@@ -0,0 +1,31 @@
|
||||
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
from spack import *
|
||||
|
||||
|
||||
class Blktrace(MakefilePackage):
|
||||
"""
|
||||
blktrace is a block layer IO tracing mechanism which provides detailed
|
||||
information about request queue operations up to user space. There are
|
||||
three major components: a kernel component, a utility to record the i/o
|
||||
trace information for the kernel to user space, and utilities to analyse
|
||||
and view the trace information.
|
||||
"""
|
||||
|
||||
homepage = "https://brick.kernel.dk"
|
||||
url = "https://brick.kernel.dk/snaps/blktrace-1.2.0.tar.gz"
|
||||
|
||||
version('1.2.0', sha256='d14029bc096026dacb206bf115c912dcdb795320b5aba6dff3e46d7f94c5242d')
|
||||
version('1.1.0', sha256='dc1e5da64b8fef454ec24aa4fcc760112b4ea7c973e2485961aa5668b3a8ce1d')
|
||||
version('1.0.5', sha256='783b4c8743498de74b3492725815d31f3842828baf8710c53bc4e7e82cee387c')
|
||||
version('1.0.4', sha256='c1b53e2382f7309e822d48fef187cf44e84bb44df52a0a9786d447d127af75cf')
|
||||
version('1.0.3', sha256='78c6825212fe6700039fab77d53bc02e6b324e712caea718fff190e4e034cfa8')
|
||||
version('1.0.2', sha256='15f01e2a952919ba3c7b90f8bd891d1a98c454626501094030df632666786343')
|
||||
|
||||
depends_on('libaio')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
install_tree('.', prefix)
|
||||
@@ -201,11 +201,11 @@ def cmake_args(self):
|
||||
#
|
||||
# Environment setup
|
||||
#
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
def setup_run_environment(self, env):
|
||||
# Bohrium needs an extra include dir apart from
|
||||
# the self.prefix.include dir
|
||||
run_env.prepend_path("CPATH", self.prefix.include.bohrium)
|
||||
run_env.set("BH_CONFIG", self.config_file)
|
||||
env.prepend_path("CPATH", self.prefix.include.bohrium)
|
||||
env.set("BH_CONFIG", self.config_file)
|
||||
|
||||
#
|
||||
# Quick tests
|
||||
|
||||
@@ -367,6 +367,12 @@ def determine_b2_options(self, spec, options):
|
||||
cxxflags.append('-stdlib=libc++')
|
||||
options.extend(['toolset=clang',
|
||||
'linkflags="-stdlib=libc++"'])
|
||||
elif spec.satisfies('%xl') or spec.satisfies('%xl_r'):
|
||||
# see also: https://lists.boost.org/boost-users/2019/09/89953.php
|
||||
# the cxxstd setting via spack is not sufficient to drive the
|
||||
# change into boost compilation
|
||||
if spec.variants['cxxstd'].value == '11':
|
||||
cxxflags.append('-std=c++11')
|
||||
|
||||
if cxxflags:
|
||||
options.append('cxxflags="{0}"'.format(' '.join(cxxflags)))
|
||||
|
||||
@@ -62,5 +62,5 @@ def filter_sbang(self):
|
||||
for file in files:
|
||||
filter_file(pattern, repl, *files, backup=False)
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
run_env.prepend_path('PERL5LIB', prefix.lib)
|
||||
def setup_run_environment(self, env):
|
||||
env.prepend_path('PERL5LIB', self.prefix.lib)
|
||||
|
||||
@@ -30,8 +30,6 @@ class Breseq(AutotoolsPackage):
|
||||
conflicts('%gcc@:4.8')
|
||||
conflicts('%clang@:3.3')
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
spack_env.set('LDFLAGS',
|
||||
"-L{0}".format(self.spec['zlib'].prefix.lib))
|
||||
spack_env.set('CFLAGS',
|
||||
"-I{0}".format(self.spec['zlib'].prefix.include))
|
||||
def setup_build_environment(self, env):
|
||||
env.set('LDFLAGS', "-L{0}".format(self.spec['zlib'].prefix.lib))
|
||||
env.set('CFLAGS', "-I{0}".format(self.spec['zlib'].prefix.include))
|
||||
|
||||
28
var/spack/repos/builtin/packages/busybox/package.py
Normal file
28
var/spack/repos/builtin/packages/busybox/package.py
Normal file
@@ -0,0 +1,28 @@
|
||||
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
from spack import *
|
||||
|
||||
|
||||
class Busybox(MakefilePackage):
|
||||
"""BusyBox combines tiny versions of many common UNIX utilities into
|
||||
a single small executable. It provides replacements for most of
|
||||
the utilities you usually find in GNU fileutils, shellutils, etc"""
|
||||
|
||||
homepage = "https://busybox.net"
|
||||
url = "https://busybox.net/downloads/busybox-1.31.0.tar.bz2"
|
||||
|
||||
version('1.31.1', sha256='d0f940a72f648943c1f2211e0e3117387c31d765137d92bd8284a3fb9752a998')
|
||||
version('1.31.0', sha256='0e4925392fd9f3743cc517e031b68b012b24a63b0cf6c1ff03cce7bb3846cc99')
|
||||
version('1.30.1', sha256='3d1d04a4dbd34048f4794815a5c48ebb9eb53c5277e09ffffc060323b95dfbdc')
|
||||
version('1.30.0', sha256='9553da068c0a30b1b8b72479908c1ba58672e2be7b535363a88de5e0f7bc04ce')
|
||||
|
||||
def build(self, spec, prefix):
|
||||
make('defconfig')
|
||||
make()
|
||||
|
||||
def install(self, spec, prefix):
|
||||
make('install')
|
||||
install_tree('.', prefix)
|
||||
36
var/spack/repos/builtin/packages/cairo/fontconfig.patch
Normal file
36
var/spack/repos/builtin/packages/cairo/fontconfig.patch
Normal file
@@ -0,0 +1,36 @@
|
||||
diff --git a/test/Makefile.am b/test/Makefile.am
|
||||
index e3c42ea88..7b5568d85 100644
|
||||
--- a/test/Makefile.am
|
||||
+++ b/test/Makefile.am
|
||||
@@ -158,8 +158,10 @@ ps-features \
|
||||
svg-clip \
|
||||
svg-surface \
|
||||
toy-font-face \
|
||||
-font-variations \
|
||||
user-data
|
||||
+#if CAIRO_HAS_FT_FONT
|
||||
+NOLOG_TESTS += font-variations
|
||||
+#endif
|
||||
|
||||
# A target to summarise the failures
|
||||
check-summary:
|
||||
diff --git a/test/Makefile.sources b/test/Makefile.sources
|
||||
index c47131faf..8568f7cf8 100644
|
||||
--- a/test/Makefile.sources
|
||||
+++ b/test/Makefile.sources
|
||||
@@ -144,7 +144,6 @@ test_sources = \
|
||||
font-face-get-type.c \
|
||||
font-matrix-translation.c \
|
||||
font-options.c \
|
||||
- font-variations.c \
|
||||
glyph-cache-pressure.c \
|
||||
get-and-set.c \
|
||||
get-clip.c \
|
||||
@@ -399,6 +398,7 @@ pthread_test_sources = \
|
||||
|
||||
ft_font_test_sources = \
|
||||
bitmap-font.c \
|
||||
+ font-variations.c \
|
||||
ft-font-create-for-ft-face.c \
|
||||
ft-show-glyphs-positioning.c \
|
||||
ft-show-glyphs-table.c \
|
||||
@@ -21,18 +21,39 @@ class Cairo(AutotoolsPackage):
|
||||
variant('X', default=False, description="Build with X11 support")
|
||||
variant('pdf', default=False, description="Enable cairo's PDF surface backend feature")
|
||||
variant('gobject', default=False, description="Enable cairo's gobject functions feature")
|
||||
variant('ft', default=False, description="Enable cairo's FreeType font backend feature")
|
||||
variant('fc', default=False, description="Enable cairo's Fontconfig font backend feature")
|
||||
variant('png', default=False, description="Enable cairo's PNG functions feature")
|
||||
variant('svg', default=False, description="Enable cairo's SVN functions feature")
|
||||
|
||||
depends_on('libx11', when='+X')
|
||||
depends_on('libxext', when='+X')
|
||||
depends_on('libxrender', when='+X')
|
||||
depends_on('libxcb', when='+X')
|
||||
depends_on('python', when='+X', type='build')
|
||||
depends_on('libpng')
|
||||
depends_on('libpng', when='+png')
|
||||
depends_on('librsvg', when='+svg')
|
||||
depends_on('glib')
|
||||
depends_on('pixman')
|
||||
depends_on('freetype')
|
||||
depends_on('automake', type='build')
|
||||
depends_on('autoconf', type='build')
|
||||
depends_on('libtool', type='build')
|
||||
depends_on('m4', type='build')
|
||||
depends_on('freetype', when='+ft')
|
||||
depends_on('pkgconfig', type='build')
|
||||
depends_on('fontconfig@2.10.91:') # Require newer version of fontconfig.
|
||||
depends_on('fontconfig@2.10.91:', when='+fc') # Require newer version of fontconfig.
|
||||
|
||||
conflicts('+png', when='platform=darwin')
|
||||
conflicts('+svg', when='platform=darwin')
|
||||
|
||||
# patch from https://gitlab.freedesktop.org/cairo/cairo/issues/346
|
||||
patch('fontconfig.patch', when='@1.16.0')
|
||||
|
||||
def setup_build_environment(self, env):
|
||||
env.set('NOCONFIGURE', "1")
|
||||
|
||||
def autoreconf(self, spec, prefix):
|
||||
which('sh')('./autogen.sh')
|
||||
|
||||
def configure_args(self):
|
||||
args = [
|
||||
@@ -47,5 +68,7 @@ def configure_args(self):
|
||||
|
||||
args.extend(self.enable_or_disable('pdf'))
|
||||
args.extend(self.enable_or_disable('gobject'))
|
||||
args.extend(self.enable_or_disable('ft'))
|
||||
args.extend(self.enable_or_disable('fc'))
|
||||
|
||||
return args
|
||||
|
||||
@@ -27,10 +27,10 @@ class Cantera(SConsPackage):
|
||||
|
||||
# Required dependencies
|
||||
depends_on('fmt@3.0.0:3.0.2', when='@2.3.0:')
|
||||
depends_on('googletest', when='@2.3.0:')
|
||||
depends_on('googletest+gmock', when='@2.3.0:')
|
||||
depends_on('eigen', when='@2.3.0:')
|
||||
depends_on('boost')
|
||||
depends_on('sundials', when='+sundials') # must be compiled with -fPIC
|
||||
depends_on('sundials@:3.1.2', when='+sundials') # must be compiled with -fPIC
|
||||
depends_on('blas')
|
||||
depends_on('lapack')
|
||||
|
||||
|
||||
@@ -25,5 +25,5 @@ class Casper(MakefilePackage):
|
||||
def install(self, spec, prefix):
|
||||
install_tree('.', prefix)
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
run_env.prepend_path('PATH', self.spec.prefix)
|
||||
def setup_run_environment(self, env):
|
||||
env.prepend_path('PATH', self.spec.prefix)
|
||||
|
||||
23
var/spack/repos/builtin/packages/cassandra/package.py
Normal file
23
var/spack/repos/builtin/packages/cassandra/package.py
Normal file
@@ -0,0 +1,23 @@
|
||||
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
from spack import *
|
||||
|
||||
|
||||
class Cassandra(Package):
|
||||
"""
|
||||
Apache Cassandra is a highly-scalable partitioned row store. Rows are
|
||||
organized into tables with a required primary key.
|
||||
"""
|
||||
|
||||
homepage = "https://github.com/apache/cassandra"
|
||||
url = "https://github.com/apache/cassandra/archive/cassandra-4.0-alpha2.tar.gz"
|
||||
|
||||
version('4.0-alpha2', sha256='6a8e99d8bc51efd500981c85c6aa547387b2fdbedecd692308f4632dbc1de3ba')
|
||||
version('4.0-alpha1', sha256='2fdf5e3d6c03a29d24a09cd52bb17575e5faccdc4c75a07edd63a9bf4f740105')
|
||||
version('3.11.5', sha256='0ee3da12a2be86d7e03203fcc56c3589ddb38347b9cd031495a2b7fcf639fea6', preferred=True)
|
||||
|
||||
def install(self, spec, prefix):
|
||||
install_tree('.', prefix)
|
||||
@@ -148,7 +148,7 @@ def do_stage(self, mirror_only=False):
|
||||
tty.msg("Already generated %s in %s" % (self.name,
|
||||
self.stage.source_path))
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
def setup_run_environment(self, env):
|
||||
# paraview 5.5 and later
|
||||
# - cmake under lib/cmake/paraview-5.5
|
||||
# - libs under lib
|
||||
@@ -160,18 +160,18 @@ def setup_environment(self, spack_env, run_env):
|
||||
|
||||
if self.spec.version <= Version('5.4.1'):
|
||||
lib_dir = join_path(lib_dir, paraview_subdir)
|
||||
run_env.set('ParaView_DIR', self.prefix)
|
||||
run_env.prepend_path('LIBRARY_PATH', lib_dir)
|
||||
run_env.prepend_path('LD_LIBRARY_PATH', lib_dir)
|
||||
env.set('ParaView_DIR', self.prefix)
|
||||
env.prepend_path('LIBRARY_PATH', lib_dir)
|
||||
env.prepend_path('LD_LIBRARY_PATH', lib_dir)
|
||||
|
||||
if '+python' in self.spec or '+python3' in self.spec:
|
||||
python_version = self.spec['python'].version.up_to(2)
|
||||
run_env.prepend_path('PYTHONPATH', join_path(lib_dir,
|
||||
'python{0}'.format(python_version),
|
||||
'site-packages'))
|
||||
env.prepend_path('PYTHONPATH', join_path(lib_dir,
|
||||
'python{0}'.format(python_version),
|
||||
'site-packages'))
|
||||
|
||||
def setup_dependent_environment(self, spack_env, run_env, dependent_spec):
|
||||
spack_env.set('ParaView_DIR', self.prefix)
|
||||
def setup_dependent_build_environment(self, env, dependent_spec):
|
||||
env.set('ParaView_DIR', self.prefix)
|
||||
|
||||
@property
|
||||
def root_cmakelists_dir(self):
|
||||
|
||||
@@ -31,27 +31,27 @@ class Cbench(MakefilePackage):
|
||||
conflicts('%xl')
|
||||
conflicts('%xl_r')
|
||||
|
||||
def setup_environment(self, build_env, run_env):
|
||||
def setup_build_environment(self, env):
|
||||
# The location of the Cbench source tree
|
||||
build_env.set('CBENCHOME', self.stage.source_path)
|
||||
env.set('CBENCHOME', self.stage.source_path)
|
||||
|
||||
# The location that will contain all of your tests and their results
|
||||
build_env.set('CBENCHTEST', self.prefix)
|
||||
env.set('CBENCHTEST', self.prefix)
|
||||
|
||||
# The location of the system MPI tree
|
||||
build_env.set('MPIHOME', self.spec['mpi'].prefix)
|
||||
env.set('MPIHOME', self.spec['mpi'].prefix)
|
||||
|
||||
# Pick the compiler collection/chain you want to compile with.
|
||||
# Examples include: intel, gcc, pgi.
|
||||
build_env.set('COMPILERCOLLECTION', self.compiler.name)
|
||||
env.set('COMPILERCOLLECTION', self.compiler.name)
|
||||
|
||||
# Linking flags for BLAS/LAPACK and FFTW
|
||||
build_env.set('BLASLIB', self.spec['blas'].libs.ld_flags)
|
||||
build_env.set('LAPACKLIB', self.spec['lapack'].libs.ld_flags)
|
||||
build_env.set('FFTWLIB', self.spec['fftw'].libs.ld_flags)
|
||||
env.set('BLASLIB', self.spec['blas'].libs.ld_flags)
|
||||
env.set('LAPACKLIB', self.spec['lapack'].libs.ld_flags)
|
||||
env.set('FFTWLIB', self.spec['fftw'].libs.ld_flags)
|
||||
|
||||
# The number of make jobs (commands) to run simultaneously
|
||||
build_env.set('JOBS', str(make_jobs))
|
||||
env.set('JOBS', str(make_jobs))
|
||||
|
||||
@run_before('build')
|
||||
@on_package_attributes(run_tests=True)
|
||||
|
||||
@@ -100,10 +100,10 @@ class CbtfKrell(CMakePackage):
|
||||
|
||||
# MPI Installations
|
||||
depends_on("openmpi", when='+openmpi')
|
||||
depends_on("mpich", when='+mpich')
|
||||
depends_on("mpich2", when='+mpich2')
|
||||
depends_on("mvapich2", when='+mvapich2')
|
||||
depends_on("mvapich", when='+mvapich')
|
||||
depends_on("mpich@:1", when='+mpich')
|
||||
depends_on("mpich@2:", when='+mpich2')
|
||||
depends_on("mvapich2@2:", when='+mvapich2')
|
||||
depends_on("mvapich2@:1", when='+mvapich')
|
||||
depends_on("mpt", when='+mpt')
|
||||
|
||||
depends_on("python", when='@develop', type=('build', 'run'))
|
||||
|
||||
@@ -34,6 +34,12 @@ class Cbtf(CMakePackage):
|
||||
|
||||
depends_on("cmake@3.0.2:", type='build')
|
||||
|
||||
# for rpcgen
|
||||
depends_on("rpcsvc-proto", type='build')
|
||||
|
||||
# for rpc
|
||||
depends_on("libtirpc", type='link')
|
||||
|
||||
depends_on("boost@1.66.0:1.69.0")
|
||||
|
||||
# For MRNet
|
||||
|
||||
11
var/spack/repos/builtin/packages/cctools/cctools_6.1.1.python.patch
Executable file
11
var/spack/repos/builtin/packages/cctools/cctools_6.1.1.python.patch
Executable file
@@ -0,0 +1,11 @@
|
||||
--- spack-src.org/umbrella/src/Makefile 2017-05-30 20:49:30.000000000 +0900
|
||||
+++ spack-src/umbrella/src/Makefile 2019-11-20 17:23:42.101854924 +0900
|
||||
@@ -16,7 +16,7 @@
|
||||
|
||||
umbrella_helper.html: umbrella.py
|
||||
# pydoc2/pydoc creates a html file, umbrella.html.
|
||||
- if which pydoc2; then pydoc2 -w umbrella; elif which pydoc; then pydoc -w umbrella; fi
|
||||
+ if which pydoc; then pydoc -w umbrella; elif which pydoc2; then pydoc2 -w umbrella; fi
|
||||
if [ -f umbrella.html ]; then mv umbrella.html umbrella_helper.html; fi
|
||||
|
||||
clean:
|
||||
116
var/spack/repos/builtin/packages/cctools/cctools_7.0.18.python.patch
Executable file
116
var/spack/repos/builtin/packages/cctools/cctools_7.0.18.python.patch
Executable file
@@ -0,0 +1,116 @@
|
||||
--- spack-src.org/configure 2019-11-25 14:33:33.991883993 +0900
|
||||
+++ spack-src/configure 2019-11-25 14:47:11.591066274 +0900
|
||||
@@ -973,18 +973,46 @@
|
||||
fi
|
||||
fi
|
||||
|
||||
+PYDOC=""
|
||||
python=0 #to be set to the python path
|
||||
if [ $config_python_path != no ]
|
||||
then
|
||||
if [ -n "$PYTHON" ] && check_file ${PYTHON}
|
||||
then
|
||||
python=${PYTHON}
|
||||
+ python_dir=`dirname ${PYTHON}`
|
||||
+ python_cmd=`basename ${PYTHON}`
|
||||
+ pydoc_cmd=`echo $python_cmd | sed s/python/pydoc/`
|
||||
+ pydoc2_cmd=`echo $python_cmd | sed s/python/pydoc2/`
|
||||
+ pydoc=${python_dir}/${pydoc_cmd}
|
||||
+ pydoc2=${python_dir}/${pydoc2_cmd}
|
||||
+ if check_file $pydoc
|
||||
+ then
|
||||
+ PYDOC=$pydoc
|
||||
+ elif check_file $pydoc2
|
||||
+ then
|
||||
+ PYDOC=$pydoc2
|
||||
+ fi
|
||||
elif check_file ${python_path}/bin/python2
|
||||
then
|
||||
python=${python_path}/bin/python2
|
||||
+ if check_file ${python_path}/bin/pydoc
|
||||
+ then
|
||||
+ PYDOC=${python_path}/bin/pydoc
|
||||
+ elif check_file ${python_path}/bin/pydoc2
|
||||
+ then
|
||||
+ PYDOC=${python_path}/bin/pydoc2
|
||||
+ fi
|
||||
elif check_file ${python_path}/bin/python
|
||||
then
|
||||
python=${python_path}/bin/python
|
||||
+ if check_file ${python_path}/bin/pydoc
|
||||
+ then
|
||||
+ PYDOC=${python_path}/bin/pydoc
|
||||
+ elif check_file ${python_path}/bin/pydoc2
|
||||
+ then
|
||||
+ PYDOC=${python_path}/bin/pydoc2
|
||||
+ fi
|
||||
else
|
||||
python=0
|
||||
fi
|
||||
@@ -1056,7 +1084,7 @@
|
||||
fi
|
||||
fi
|
||||
|
||||
-if [ $python_dev = no ]
|
||||
+if [ "$python_dev" = no ]
|
||||
then
|
||||
if [ $config_python_path = yes ]
|
||||
then
|
||||
@@ -1073,12 +1101,48 @@
|
||||
if [ -n "$PYTHON3" ] && check_file ${PYTHON3}
|
||||
then
|
||||
python3=${PYTHON3}
|
||||
+ if [ "$PYDOC" = "" ]
|
||||
+ then
|
||||
+ python_dir=`dirname ${PYTHON3}`
|
||||
+ python_cmd=`basename ${PYTHON3}`
|
||||
+ pydoc_cmd=`echo $python_cmd | sed s/python/pydoc/`
|
||||
+ pydoc3_cmd=`echo $python_cmd | sed s/python/pydoc3/`
|
||||
+ pydoc=${python_dir}/${pydoc_cmd}
|
||||
+ pydoc3=${python_dir}/${pydoc3_cmd}
|
||||
+ if check_file $pydoc
|
||||
+ then
|
||||
+ PYDOC=$pydoc
|
||||
+ elif heck_file $pydoc3
|
||||
+ then
|
||||
+ PYDOC=$pydoc3
|
||||
+ fi
|
||||
+ fi
|
||||
elif check_file ${python3_path}/bin/python3
|
||||
then
|
||||
python3=${python3_path}/bin/python3
|
||||
+ if [ "$PYDOC" = "" ]
|
||||
+ then
|
||||
+ if check_file ${python3_path}/bin/pydoc
|
||||
+ then
|
||||
+ PYDOC=${python3_path}/bin/pydoc
|
||||
+ elif check_file ${python3_path}/bin/pydoc3
|
||||
+ then
|
||||
+ PYDOC=${python3_path}/bin/pydoc3
|
||||
+ fi
|
||||
+ fi
|
||||
elif check_file ${python3_path}/bin/python
|
||||
then
|
||||
python3=${python3_path}/bin/python
|
||||
+ if [ "$PYDOC" = "" ]
|
||||
+ then
|
||||
+ if check_file ${python3_path}/bin/pydoc
|
||||
+ then
|
||||
+ PYDOC=${python3_path}/bin/pydoc
|
||||
+ elif check_file ${python3_path}/bin/pydoc3
|
||||
+ then
|
||||
+ PYDOC=${python3_path}/bin/pydoc3
|
||||
+ fi
|
||||
+ fi
|
||||
else
|
||||
python3=0
|
||||
fi
|
||||
@@ -1630,7 +1694,7 @@
|
||||
CCTOOLS_PYTHON3_2TO3=${python3_2to3}
|
||||
CCTOOLS_PYTHON3_PATH=\$(CCTOOLS_INSTALL_DIR)/lib/python\$(CCTOOLS_PYTHON3_VERSION)/site-packages
|
||||
|
||||
-CCTOOLS_PYDOC=$(which pydoc 2> /dev/null || which pydoc2 2> /dev/null || which pydoc3 > /dev/null)
|
||||
+CCTOOLS_PYDOC=${PYDOC}
|
||||
|
||||
CCTOOLS_SGE_PARAMETERS=$(echo ${sge_parameters} | sed -e 's/\$/\\\$\$/g')
|
||||
|
||||
@@ -20,12 +20,15 @@ class Cctools(AutotoolsPackage):
|
||||
|
||||
depends_on('openssl')
|
||||
depends_on('perl+shared', type=('build', 'run'))
|
||||
depends_on('python@:3', type=('build', 'run'))
|
||||
depends_on('python@:2.9', when='@6.1.1', type=('build', 'run'))
|
||||
depends_on('python', type=('build', 'run'))
|
||||
depends_on('readline')
|
||||
depends_on('swig')
|
||||
# depends_on('xrootd')
|
||||
depends_on('zlib')
|
||||
patch('arm.patch', when='target=aarch64:')
|
||||
patch('cctools_7.0.18.python.patch', when='@7.0.18')
|
||||
patch('cctools_6.1.1.python.patch', when='@6.1.1')
|
||||
|
||||
# Generally SYS_foo is defined to __NR_foo (sys/syscall.h) which
|
||||
# is then defined to a syscall number (asm/unistd_64.h). Certain
|
||||
@@ -41,10 +44,21 @@ def patch(self):
|
||||
|
||||
def configure_args(self):
|
||||
args = []
|
||||
# For python
|
||||
if self.spec.satisfies('^python@3:'):
|
||||
args.append('--with-python-path=no')
|
||||
args.append(
|
||||
'--with-python3-path={0}'.format(self.spec['python'].prefix)
|
||||
)
|
||||
else:
|
||||
args.append('--with-python3-path=no')
|
||||
args.append(
|
||||
'--with-python-path={0}'.format(self.spec['python'].prefix)
|
||||
)
|
||||
# disable these bits
|
||||
for p in ['mysql', 'python3', 'xrootd']:
|
||||
for p in ['mysql', 'xrootd']:
|
||||
args.append('--with-{0}-path=no'.format(p))
|
||||
# point these bits at the Spack installations
|
||||
for p in ['openssl', 'perl', 'python', 'readline', 'swig', 'zlib']:
|
||||
for p in ['openssl', 'perl', 'readline', 'swig', 'zlib']:
|
||||
args.append('--with-{0}-path={1}'.format(p, self.spec[p].prefix))
|
||||
return args
|
||||
|
||||
@@ -31,5 +31,5 @@ def build(self, spec, prefix):
|
||||
make_args.append('zlib=no')
|
||||
make(*make_args)
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
spack_env.set('PREFIX', prefix.bin)
|
||||
def setup_build_environment(self, env):
|
||||
env.set('PREFIX', self.prefix.bin)
|
||||
|
||||
@@ -16,6 +16,8 @@ class Ceed(BundlePackage):
|
||||
|
||||
homepage = "https://ceed.exascaleproject.org"
|
||||
|
||||
version('2.0')
|
||||
|
||||
variant('cuda', default=False,
|
||||
description='Build MAGMA; enable CUDA support in libCEED and OCCA')
|
||||
variant('mfem', default=True, description='Build MFEM and Laghos')
|
||||
|
||||
@@ -82,17 +82,17 @@ class Charmpp(Package):
|
||||
provides('mpi@2', when='@6.7.1: build-target=AMPI backend={0}'.format(b))
|
||||
provides('mpi@2', when='@6.7.1: build-target=LIBS backend={0}'.format(b))
|
||||
|
||||
def setup_dependent_environment(self, spack_env, run_env, dependent_spec):
|
||||
spack_env.set('MPICC', join_path(self.prefix.bin, 'ampicc'))
|
||||
spack_env.set('MPICXX', join_path(self.prefix.bin, 'ampicxx'))
|
||||
spack_env.set('MPIF77', join_path(self.prefix.bin, 'ampif77'))
|
||||
spack_env.set('MPIF90', join_path(self.prefix.bin, 'ampif90'))
|
||||
def setup_dependent_build_environment(self, env, dependent_spec):
|
||||
env.set('MPICC', self.prefix.bin.ampicc)
|
||||
env.set('MPICXX', self.prefix.bin.ampicxx)
|
||||
env.set('MPIF77', self.prefix.bin.ampif77)
|
||||
env.set('MPIF90', self.prefix.bin.ampif90)
|
||||
|
||||
def setup_dependent_package(self, module, dependent_spec):
|
||||
self.spec.mpicc = join_path(self.prefix.bin, 'ampicc')
|
||||
self.spec.mpicxx = join_path(self.prefix.bin, 'ampicxx')
|
||||
self.spec.mpifc = join_path(self.prefix.bin, 'ampif90')
|
||||
self.spec.mpif77 = join_path(self.prefix.bin, 'ampif77')
|
||||
self.spec.mpicc = self.prefix.bin.ampicc
|
||||
self.spec.mpicxx = self.prefix.bin.ampicxx
|
||||
self.spec.mpifc = self.prefix.bin.ampif90
|
||||
self.spec.mpif77 = self.prefix.bin.ampif77
|
||||
|
||||
depends_on("mpi", when="backend=mpi")
|
||||
depends_on("papi", when="+papi")
|
||||
@@ -238,6 +238,14 @@ def install(self, spec, prefix):
|
||||
pass
|
||||
shutil.rmtree(join_path(prefix, "tmp"))
|
||||
|
||||
# A broken 'doc' link in the prefix can break the build.
|
||||
# Remove it and replace it if it is broken.
|
||||
try:
|
||||
os.stat(prefix.doc)
|
||||
except OSError:
|
||||
os.remove(prefix.doc)
|
||||
mkdirp(prefix.doc)
|
||||
|
||||
@run_after('install')
|
||||
@on_package_attributes(run_tests=True)
|
||||
def check_build(self):
|
||||
|
||||
@@ -35,22 +35,27 @@ def autoreconf(self, spec, prefix):
|
||||
bash = which('bash')
|
||||
bash('./bootstrap')
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
def setup_build_environment(self, env):
|
||||
rose_home = self.spec['rose'].prefix
|
||||
boost_home = self.spec['boost'].prefix
|
||||
iegen_home = self.spec['iegenlib'].prefix
|
||||
|
||||
spack_env.append_path('LD_LIBRARY_PATH', rose_home.lib)
|
||||
spack_env.append_path('LD_LIBRARY_PATH', boost_home.lib)
|
||||
spack_env.append_path('LD_LIBRARY_PATH', iegen_home.lib)
|
||||
env.set('ROSEHOME', rose_home)
|
||||
env.set('BOOSTHOME', boost_home)
|
||||
env.set('IEGENHOME', iegen_home)
|
||||
|
||||
run_env.append_path('LD_LIBRARY_PATH', rose_home.lib)
|
||||
run_env.append_path('LD_LIBRARY_PATH', boost_home.lib)
|
||||
run_env.append_path('LD_LIBRARY_PATH', iegen_home.lib)
|
||||
env.append_path('LD_LIBRARY_PATH', rose_home.lib)
|
||||
env.append_path('LD_LIBRARY_PATH', boost_home.lib)
|
||||
env.append_path('LD_LIBRARY_PATH', iegen_home.lib)
|
||||
|
||||
spack_env.set('ROSEHOME', rose_home)
|
||||
spack_env.set('BOOSTHOME', boost_home)
|
||||
spack_env.set('IEGENHOME', iegen_home)
|
||||
def setup_run_environment(self, env):
|
||||
rose_home = self.spec['rose'].prefix
|
||||
boost_home = self.spec['boost'].prefix
|
||||
iegen_home = self.spec['iegenlib'].prefix
|
||||
|
||||
env.append_path('LD_LIBRARY_PATH', rose_home.lib)
|
||||
env.append_path('LD_LIBRARY_PATH', boost_home.lib)
|
||||
env.append_path('LD_LIBRARY_PATH', iegen_home.lib)
|
||||
|
||||
def configure_args(self):
|
||||
args = ['--with-rose={0}'.format(self.spec['rose'].prefix),
|
||||
|
||||
@@ -29,5 +29,5 @@ def install(self, spec, prefix):
|
||||
os.rename('chlorop', 'bin/chlorop')
|
||||
install_tree('.', prefix)
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
run_env.set('CHLOROP', self.prefix)
|
||||
def setup_run_environment(self, env):
|
||||
env.set('CHLOROP', self.prefix)
|
||||
|
||||
@@ -23,6 +23,6 @@ def install(self, spec, prefix):
|
||||
# (CMake) Header Only library so just copy
|
||||
install_tree(self.stage.source_path, prefix)
|
||||
|
||||
def setup_dependent_environment(self, spack_env, run_env, dependent_spec):
|
||||
spack_env.prepend_path('CMAKE_PREFIX_PATH', self.prefix)
|
||||
spack_env.set('CINCH_SOURCE_DIR', self.prefix)
|
||||
def setup_dependent_build_environment(self, env, dependent_spec):
|
||||
env.prepend_path('CMAKE_PREFIX_PATH', self.prefix)
|
||||
env.set('CINCH_SOURCE_DIR', self.prefix)
|
||||
|
||||
@@ -36,9 +36,9 @@ class Citcoms(AutotoolsPackage):
|
||||
conflicts('+pyre', when='@3.3:', msg='Pyre support was removed from 3.3+')
|
||||
conflicts('+exchanger', when='@3.3:', msg='Exchanger support was removed from 3.3+')
|
||||
|
||||
def setup_environment(self, spack_env, run_env):
|
||||
def setup_build_environment(self, env):
|
||||
if '+ggrd' in self.spec:
|
||||
spack_env.set('HC_HOME', self.spec['hc'].prefix)
|
||||
env.set('HC_HOME', self.spec['hc'].prefix)
|
||||
|
||||
def configure_args(self):
|
||||
args = ['CC={0}'.format(self.spec['mpi'].mpicc)]
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user