From 5c91667dabe7206fc99409862974ec4a08c3fbbe Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Mos=C3=A8=20Giordano?= <765740+giordano@users.noreply.github.com> Date: Mon, 3 Feb 2025 21:17:47 +0100 Subject: [PATCH] r-dmrcate: add v2.16.0, v3.0.0, v3.2.0 (#48158) * r-dmrcate: add new versions * r-dmrcate: require `r@4.3.0` for v2.99.0+ * r-dmrcate: update dependencies --- var/spack/repos/builtin/packages/r-dmrcate/package.py | 10 ++++++++-- 1 file changed, 8 insertions(+), 2 deletions(-) diff --git a/var/spack/repos/builtin/packages/r-dmrcate/package.py b/var/spack/repos/builtin/packages/r-dmrcate/package.py index c1b2be0eae2..038a44cd19c 100644 --- a/var/spack/repos/builtin/packages/r-dmrcate/package.py +++ b/var/spack/repos/builtin/packages/r-dmrcate/package.py @@ -16,6 +16,9 @@ class RDmrcate(RPackage): bioc = "DMRcate" + version("3.2.0", commit="1f46517bcdea269a2c9726d1156495d6dd172067") + version("3.0.0", commit="9cd77dedef76528990487b931ae0cc314423c3b9") + version("2.16.0", commit="9e42d8c8eb26dbd2d36a70bf32be322062ecc850") version("2.14.0", commit="6e7bae0917001e7664f01c3f8d261f9fe28c2f4d") version("2.12.0", commit="560dd5067b05715631739d0fb58ef9cebdbf7078") version("2.10.0", commit="81e83701da5c55ac83d0e0b5e640a9d431f09551") @@ -23,13 +26,15 @@ class RDmrcate(RPackage): version("2.4.1", commit="bc6242a0291a9b997872f575a4417d38550c9550") depends_on("r@3.6.0:", type=("build", "run")) - depends_on("r@4.0.0:", type=("build", "run"), when="@2.8.5:") + depends_on("r@4.0.0:", type=("build", "run"), when="@2.8.5:2.17.1") + depends_on("r@4.3.0:", type=("build", "run"), when="@2.99.0:") + depends_on("r-annotationhub", type=("build", "run"), when="@2.99.0:") depends_on("r-experimenthub", type=("build", "run")) depends_on("r-bsseq", type=("build", "run")) depends_on("r-genomeinfodb", type=("build", "run")) depends_on("r-limma", type=("build", "run")) depends_on("r-edger", type=("build", "run")) - depends_on("r-dss", type=("build", "run")) + depends_on("r-dss", type=("build", "run"), when="@:2.17.1") depends_on("r-minfi", type=("build", "run")) depends_on("r-missmethyl", type=("build", "run")) depends_on("r-genomicranges", type=("build", "run")) @@ -38,3 +43,4 @@ class RDmrcate(RPackage): depends_on("r-iranges", type=("build", "run")) depends_on("r-s4vectors", type=("build", "run")) depends_on("r-summarizedexperiment", type=("build", "run")) + depends_on("r-biomart", type=("build", "run"), when="@2.99.0:")