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r-dmrcate: add v2.16.0, v3.0.0, v3.2.0 (#48158)

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* r-dmrcate: add new versions
* r-dmrcate: require `r@4.3.0` for v2.99.0+
* r-dmrcate: update dependencies
This commit is contained in:
Mosè Giordano 2025-02-03 21:17:47 +01:00 committed by GitHub
parent 9efd6f3f11
commit 5c91667dab
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1 changed files with 8 additions and 2 deletions
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var/spack/repos/builtin/packages/r-dmrcate/package.py
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@ -16,6 +16,9 @@ class RDmrcate(RPackage):
bioc = "DMRcate" bioc = "DMRcate"
version("3.2.0", commit="1f46517bcdea269a2c9726d1156495d6dd172067")
version("3.0.0", commit="9cd77dedef76528990487b931ae0cc314423c3b9")
version("2.16.0", commit="9e42d8c8eb26dbd2d36a70bf32be322062ecc850")
version("2.14.0", commit="6e7bae0917001e7664f01c3f8d261f9fe28c2f4d") version("2.14.0", commit="6e7bae0917001e7664f01c3f8d261f9fe28c2f4d")
version("2.12.0", commit="560dd5067b05715631739d0fb58ef9cebdbf7078") version("2.12.0", commit="560dd5067b05715631739d0fb58ef9cebdbf7078")
version("2.10.0", commit="81e83701da5c55ac83d0e0b5e640a9d431f09551") version("2.10.0", commit="81e83701da5c55ac83d0e0b5e640a9d431f09551")
@ -23,13 +26,15 @@ class RDmrcate(RPackage):
version("2.4.1", commit="bc6242a0291a9b997872f575a4417d38550c9550") version("2.4.1", commit="bc6242a0291a9b997872f575a4417d38550c9550")
depends_on("r@3.6.0:", type=("build", "run")) depends_on("r@3.6.0:", type=("build", "run"))
depends_on("r@4.0.0:", type=("build", "run"), when="@2.8.5:") depends_on("r@4.0.0:", type=("build", "run"), when="@2.8.5:2.17.1")
depends_on("r@4.3.0:", type=("build", "run"), when="@2.99.0:")
depends_on("r-annotationhub", type=("build", "run"), when="@2.99.0:")
depends_on("r-experimenthub", type=("build", "run")) depends_on("r-experimenthub", type=("build", "run"))
depends_on("r-bsseq", type=("build", "run")) depends_on("r-bsseq", type=("build", "run"))
depends_on("r-genomeinfodb", type=("build", "run")) depends_on("r-genomeinfodb", type=("build", "run"))
depends_on("r-limma", type=("build", "run")) depends_on("r-limma", type=("build", "run"))
depends_on("r-edger", type=("build", "run")) depends_on("r-edger", type=("build", "run"))
depends_on("r-dss", type=("build", "run")) depends_on("r-dss", type=("build", "run"), when="@:2.17.1")
depends_on("r-minfi", type=("build", "run")) depends_on("r-minfi", type=("build", "run"))
depends_on("r-missmethyl", type=("build", "run")) depends_on("r-missmethyl", type=("build", "run"))
depends_on("r-genomicranges", type=("build", "run")) depends_on("r-genomicranges", type=("build", "run"))
@ -38,3 +43,4 @@ class RDmrcate(RPackage):
depends_on("r-iranges", type=("build", "run")) depends_on("r-iranges", type=("build", "run"))
depends_on("r-s4vectors", type=("build", "run")) depends_on("r-s4vectors", type=("build", "run"))
depends_on("r-summarizedexperiment", type=("build", "run")) depends_on("r-summarizedexperiment", type=("build", "run"))
depends_on("r-biomart", type=("build", "run"), when="@2.99.0:")