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entrezdirect: add v22.6.20240912 (#46470)

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Signed-off-by: Shane Nehring <snehring@iastate.edu>
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snehring 2024-09-26 04:14:27 -05:00 committed by GitHub
parent c62ed8bb2f
commit 5e56fa839d
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1 changed files with 77 additions and 1 deletions
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var/spack/repos/builtin/packages/entrezdirect/package.py
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@ -12,21 +12,97 @@ class Entrezdirect(Package):
gene, variation, expression, etc.) from a UNIX terminal window."""
homepage = "https://www.ncbi.nlm.nih.gov/books/NBK179288/"
maintainers("snehring")
version(
"22.6.20240912", sha256="ddf1aab438bfe6af7cf38f725dac6f288d0daf354197665a66d4556c91129ace"
)
version(
"10.7.20190114", sha256="4152749e6a3aac71a64e9367527428714ed16cf1fb6c7eff1298cca9ef144c0d"
)
resource(
name="rchive.ARM64",
placement="rchive-bin",
url="https://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/22.6.20240912/rchive.ARM64.gz",
sha256="48dbd770a62505e3a52cd475f564ba8ab4a20729c318114f8177d5342c519122",
when="@22.6.20240912 platform=linux target=aarch64:",
)
resource(
name="rchive.Linux",
placement="rchive-bin",
url="https://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/22.6.20240912/rchive.Linux.gz",
sha256="2454ca3423df31f4057d1d2ce743e14eb3142d856e688dbbc6586cd9a6b7948c",
when="@22.6.20240912 platform=linux target=x86_64:",
)
resource(
name="rchive.Silicon",
placement="rchive-bin",
url="https://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/22.6.20240912/xtract.Silicon.gz",
sha256="fd7f73d42055b35783107257eb8d96cc2b65daa00c47774cf1913ab83156719c",
when="@22.6.20240912 platform=darwin target=aarch64:",
)
resource(
name="transmute.ARM64",
placement="transmute-bin",
url="https://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/22.6.20240912/transmute.ARM64.gz",
sha256="c9d5dede1c70c29839af4d40a4eb55c0788a8943dc2bde5c919c8bf0be584f34",
when="@22.6.20240912 platform=linux target=aarch64:",
)
resource(
name="transmute.Linux",
placement="transmute-bin",
url="https://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/22.6.20240912/transmute.Linux.gz",
sha256="8a8746b991494f354cb94dc46740691810b673ae1ff5235cf5a60b29fb974ac2",
when="@22.6.20240912 platform=linux target=x86_64:",
)
resource(
name="transmute.Silicon",
placement="transmute-bin",
url="https://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/22.6.20240912/transmute.Silicon.gz",
sha256="5ec32a04a29db90a98dced0dbef717da174c6a1228fdb86b94bc35d1aed26545",
when="@22.6.20240912 platform=darwin target=aarch64:",
)
resource(
name="xtract.ARM64",
placement="xtract-bin",
url="https://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/22.6.20240912/xtract.ARM64.gz",
sha256="1d62f612b2be6265c517af6c7a5d6bec0ce3f11bcccc6602a78ce1113bd4fc6c",
when="@22.6.20240912 platform=linux target=aarch64:",
)
resource(
name="xtract.Linux",
placement="xtract-bin",
url="https://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/22.6.20240912/xtract.Linux.gz",
sha256="cc3994ce640cfe9ed67f4b8c31d6d22d006503c11a8506d50a5a9fe7c0b59124",
when="@22.6.20240912 platform=linux target=x86_64:",
)
resource(
name="xtract.Silicon",
placement="xtract-bin",
url="https://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/22.6.20240912/xtract.Silicon.gz",
sha256="fd7f73d42055b35783107257eb8d96cc2b65daa00c47774cf1913ab83156719c",
when="@22.6.20240912 platform=darwin target=aarch64:",
)
depends_on("curl", type="run")
depends_on("perl", type="run")
depends_on("perl-html-parser", type="run")
depends_on("perl-libwww-perl", type="run")
depends_on("perl-lwp-protocol-https", type="run")
depends_on("perl-http-message", type="run")
depends_on("perl-xml-simple", type="run")
depends_on("python", type="run", when="@22:")
def url_for_version(self, ver):
pfx = "ftp://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/"
pfx = "https://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/"
return pfx + "{0}/edirect-{0}.tar.gz".format(ver.dotted)
def install(self, spec, prefix):
for i in ["rchive", "transmute", "xtract"]:
src = f"{i}-bin"
exe = find(src, "*")[0]
set_executable(exe)
copy(exe, ".")
remove_linked_tree(src)
install_tree(".", prefix.bin)