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kentutils: new pacakge (#4831)

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Audrey Thoma 2017-07-20 13:16:32 -05:00 committed by Adam J. Stewart
parent 16fbd0fc41
commit 5f0e1514ac
1 changed files with 52 additions and 0 deletions
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var/spack/repos/builtin/packages/kentutils/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Kentutils(MakefilePackage):
"""Jim Kent command line bioinformatic utilities"""
homepage = "https://github.com/ENCODE-DCC/kentUtils"
url = "https://github.com/ENCODE-DCC/kentUtils"
version('302.1', git='https://github.com/ENCODE-DCC/kentUtils.git', commit='d8376c5d52a161f2267346ed3dc94b5dce74c2f9')
depends_on('libpng')
depends_on('openssl')
# Actually depends on mysql, but mariadb works for now until mysql is
# available
depends_on('mariadb')
conflicts('%cce')
conflicts('%clang')
conflicts('%intel')
conflicts('%nag')
conflicts('%pgi')
conflicts('%xl')
conflicts('%xl_r')
def install(self, spec, prefix):
install_tree('bin', prefix.bin)