Coastal Codes (#37176)

* Coastal codes installation
* Finished debugging swan.
* Fix formatting errors identified by flake8
* Another attempt to fix formatting.
* Fixed year in header.
* Fixed maintainers syntax and other details from review comments.
* Remove redundant url.

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

var/spack/repos/builtin/packages/funwave/package.py

@@ -0,0 +1,47 @@
+# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+import os
+
+from spack.package import *
+
+
+class Funwave(MakefilePackage):
+    """
+    What is FUNWAVE-TVD?
+    FUNWAVE-TVD is the Total Variation Diminishing (TVD) version of the fully nonlinear Boussinesq
+    wave model (FUNWAVE) developed by Shi et al. (2012). The FUNWAVE model was initially developed
+    by Kirby et al. (1998) based on Wei et al. (1995). The development of the present version was
+    motivated by recent needs for modeling of surfzone--cale optical properties in a Boussinesq
+    model framework, and modeling of Tsunami waves in both a global/coastal scale for prediction
+    of coastal inundation and a basin scale for wave propagation.
+    """
+
+    homepage = "https://fengyanshi.github.io/build/html/index.html"
+    git = "https://github.com/fengyanshi/FUNWAVE-TVD"
+
+    maintainers("stevenrbrandt", "fengyanshi")
+
+    version("3.2", tag="v3.2")
+    version("3.1", tag="v3.1")
+    version("3.0", tag="v3.0")
+
+    depends_on("mpi")
+
+    parallel = False
+
+    def build(self, spec, prefix):
+        with working_dir("./src"):
+            make()
+
+    def install(self, spec, prefix):
+        bin = os.path.join(prefix, "bin")
+        os.makedirs(bin, exist_ok=True)
+        copy("./src/funwave_vessel", os.path.join(bin, "funwave"))
+
+    def edit(self, spec, prefix):
+        with working_dir("./src"):
+            makefile = FileFilter("Makefile")
+            makefile.filter("FLAG_8 = -DCOUPLING", "#FLAG_8 = -DCOUPLING")

var/spack/repos/builtin/packages/swan/package.py

@@ -3,6 +3,8 @@
 #
 # SPDX-License-Identifier: (Apache-2.0 OR MIT)
 
+import re
+
 from spack.package import *
 
 
@@ -14,22 +16,38 @@ class Swan(MakefilePackage):
     features. This list reflects on the scientific relevance of
     the development of SWAN."""
 
-    homepage = "http://swanmodel.sourceforge.net/"
+    homepage = "https://swanmodel.sourceforge.net/"
-    url = "https://cfhcable.dl.sourceforge.net/project/swanmodel/swan/41.31/swan4131.tar.gz"
+    url = "https://swanmodel.sourceforge.io/download/zip/swan4145.tar.gz"
 
-    maintainers("lhxone")
+    maintainers("lhxone", "stevenrbrandt")
 
-    version("4131", sha256="cd3ba1f0d79123f1b7d42a43169f07575b59b01e604c5e66fbc09769e227432e")
+    # This is very important
+    parallel = False
+
+    version(
+        "4145",
+        preferred=True,
+        sha256="4cced2250f11f5cff3417d1f541f5e3cdd09fa1bc4fd986e0d0917bfb88b1e2a",
+    )
+
+    version("4141", sha256="5d411e6602bd4ef764f6c7d23e5e25b588e955cb21a606d6d8a7bc4c9393aa0a")
 
     depends_on("mpi")
     depends_on("netcdf-fortran")
-    depends_on("libfabric")
+    depends_on("perl", type="build")
 
     def edit(self, spec, prefix):
-        env["FC"] = "gfortran"
+        fc = re.sub(r".*[\\/]", "", env["FC"])
+        mpifc = re.sub(r".*[\\/]", "", spec["mpi"].mpifc)
+
+        # Must not be the full path to the compiler or platform.pl gets confused
+        env["FC"] = fc
+        env["F90_MPI"] = mpifc
+
         m = FileFilter("platform.pl")
-        m.filter("F90_MPI = .*", 'F90_MPI = mpifort\\n";')
+        m.filter("F90_MPI = .*", "F90_MPI = " + mpifc + '\\n";')
-        m.filter("NETCDFROOT =", "NETCDFROOT = {0}" + spec["netcdf-fortran"].prefix)
+        m.filter("NETCDFROOT =", "NETCDFROOT = " + spec["netcdf-fortran"].prefix)
+        m.filter(r"-lnetcdf\b", "")
 
     def build(self, spec, prefix):
         make("config")