Adding FASTMath uber package and missing FASTMath packages (#4120)

* adding 0.5.1 and variant for uint8 bit stream word type * Revisions as per davydden * fixing style (flake8) issues * - switched to derive from MakefilePackage - fixed typo in variant check - Confirmed installs correctly with bswtuint8 variant * added build method; changed zfp_incdir to incdir * * Adding uber fastmath package to support 'spack install fastmath' * Adding dims variant boxlib to control compile-time spatial dimension count * Explicitly disabling many parts of moab to get lib to build. Don't need tools yet. * Add logic to spack/setup-env to not refer to $SYS_TYPE if its not defined. * adding mesquite package * * Added Chombo (still working on Fortran name mangling) * Made mesquite depend on mpi * Fixed use of boxlib's dims numerical variant * adding PUMI * flake8 compliance * adding phasta * fixing flake8 issues * undue $SYS_TYPE protection change * fixing install step for fastmath uber package; resolve issues requested by adamjstewart in PR * revisions as per adamjstewart * re-enabling trilinos and phasta dependencies * all changes requested modulu values= and assert statement * fixing cmake_args usage in pumi; fixing lib installs for chombo * first pass at numerical variant * fixing dims variant as per @adamjstewart * fixing func/var name collision * fixing means of disabling -Werror * fix name collision for cmake_args var/func * fixing chombo homepage/url; make FASTMath use chombo#3.2; remove extraneous comment about boxlib dim * remove dummy fastmath package; switch to @BarrySmith soln for install of dummy bundle * fix flake8 import os issue * remove extraneous comment * adding url for fastmath scidac site * final fixes as per @adamjstewart * adding 1 dims option for boxlib * switching make(all) to gmake(all)
2017-05-09 16:26:57 -07:00
parent a5fd658986
commit 64fb2f22b4
10 changed files with 477 additions and 3 deletions
--- a/var/spack/repos/builtin/packages/pumi/package.py
+++ b/var/spack/repos/builtin/packages/pumi/package.py
@@ -0,0 +1,65 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+import sys
+
+
+class Pumi(CMakePackage):
+    """SCOREC RPI's Parallel Unstructured Mesh Infrastructure (PUMI).
+       An efficient distributed mesh data structure and methods to support
+       parallel adaptive analysis including general mesh-based operations,
+       such as mesh entity creation/deletion, adjacency and geometric
+       classification, iterators, arbitrary (field) data attachable to mesh
+       entities, efficient communication involving entities duplicated
+       across multiple tasks, migration of mesh entities between tasks,
+       and dynamic load balancing."""
+
+    homepage = "https://www.scorec.rpi.edu/pumi"
+    url      = "https://github.com/SCOREC/core.git"
+
+    version('0.0.1', git='https://github.com/SCOREC/core.git',
+        commit='0c315e82b3f2478dc18bdd6cfa89f1cddb85cd6a')
+    version('develop', git='https://github.com/SCOREC/core.git',
+        branch='master')
+
+    if sys.platform == 'darwin':
+        patch('phiotimer.cc.darwin.patch', level=0)  # !clock_gettime
+
+    variant('zoltan', default=False, description='Enable Zoltan Features')
+
+    depends_on('mpi')
+    depends_on('zoltan', when='+zoltan')
+
+    def cmake_args(self):
+        spec = self.spec
+
+        args = [
+            '-DSCOREC_CXX_WARNINGS=OFF',
+            '-DENABLE_ZOLTAN=%s' % ('ON' if '+zoltan' in spec else 'OFF'),
+            '-DCMAKE_C_COMPILER=%s' % spec['mpi'].mpicc,
+            '-DCMAKE_CXX_COMPILER=%s' % spec['mpi'].mpicxx,
+        ]
+
+        return args
--- a/var/spack/repos/builtin/packages/pumi/phiotimer.cc.darwin.patch
+++ b/var/spack/repos/builtin/packages/pumi/phiotimer.cc.darwin.patch
@@ -0,0 +1,21 @@
+*** ./phasta/phiotimer.cc	2017-05-03 12:26:25.000000000 -0700
+--- ./phasta/phiotimer.cc.patched	2017-05-03 12:26:11.000000000 -0700
+***************
+*** 56,63 ****
+  }
+  #else
+  void phastaio_time(phastaioTime* t) {
+!   int err;
+!   err = clock_gettime(CLOCK_MONOTONIC,t);
+    PCU_ALWAYS_ASSERT(!err);
+  }
+  /*return elapsed time in micro seconds*/
+--- 56,63 ----
+  }
+  #else
+  void phastaio_time(phastaioTime* t) {
+!   int err=0;
+!   /*err = clock_gettime(CLOCK_MONOTONIC,t);*/
+    PCU_ALWAYS_ASSERT(!err);
+  }
+  /*return elapsed time in micro seconds*/