r-affyexpress: Create new package. (#5807)
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var/spack/repos/builtin/packages/r-affyexpress/package.py
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##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RAffyexpress(RPackage):
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"""The purpose of this package is to provide a comprehensive and
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easy-to-use tool for quality assessment and to identify differentially
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expressed genes in the Affymetrix gene expression data."""
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homepage = "https://www.bioconductor.org/packages/AffyExpress/"
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url = "https://git.bioconductor.org/packages/AffyExpress"
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version('1.42.0', git='https://git.bioconductor.org/packages/AffyExpress', commit='f5c5cf6173f4419e25f4aeff5e6b705a40abc371')
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depends_on('r@3.4.0:3.4.9', when='@1.42.0')
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depends_on('r-affy', type=('build', 'run'))
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depends_on('r-limma', type=('build', 'run'))
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