bamutil: updating to 1.0.15 (#30623)
* bamutil: updating to 1.0.15 * bamutil: switching to github archive
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@ -13,17 +13,18 @@ class Bamutil(MakefilePackage):
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"""
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homepage = "https://genome.sph.umich.edu/wiki/BamUtil"
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url = "https://genome.sph.umich.edu/w/images/7/70/BamUtilLibStatGen.1.0.13.tgz"
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url = "https://github.com/statgen/bamUtil/archive/refs/tags/v1.0.15.tar.gz"
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git = "https://github.com/statgen/bamUtil.git"
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maintainers = ['snehring']
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version('1.0.13', sha256='16c1d01c37d1f98b98c144f3dd0fda6068c1902f06bd0989f36ce425eb0c592b')
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version('1.0.15', sha256='24ac4bdb81eded6e33f60dba85ec3d32ebdb06d42f75df775c2632bbfbd8cce9')
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version('1.0.13', sha256='16c1d01c37d1f98b98c144f3dd0fda6068c1902f06bd0989f36ce425eb0c592b',
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url='https://genome.sph.umich.edu/w/images/7/70/BamUtilLibStatGen.1.0.13.tgz')
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depends_on('zlib', type=('build', 'link'))
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depends_on('zlib')
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depends_on('git', type='build', when='@1.0.15:')
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# Looks like this will be fixed in 1.0.14.
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# https://github.com/statgen/libStatGen/issues/9
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patch('libstatgen-issue-9.patch', when='@1.0.13:')
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# These are fixed in the standalone libStatGen,
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# but bamutil@1.0.13 embeds its own copy, so fix 'em here.
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patch('libstatgen-issue-9.patch', when='@1.0.13')
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patch('libstatgen-issue-19.patch', when='@1.0.13')
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patch('libstatgen-issue-17.patch', when='@1.0.13')
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patch('libstatgen-issue-7.patch', when='@1.0.13')
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@ -31,6 +32,15 @@ class Bamutil(MakefilePackage):
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parallel = False
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@when('@1.0.15')
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def edit(self, spec, prefix):
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filter_file('git://', 'https://', 'Makefile.inc', String=True)
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@when('@1.0.15:')
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def build(self, spec, prefix):
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make('cloneLib')
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make()
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@property
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def install_targets(self):
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return ['install', 'INSTALLDIR={0}'.format(self.prefix.bin)]
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