bamutil: updating to 1.0.15 (#30623)

* bamutil: updating to 1.0.15

* bamutil: switching to github archive

var/spack/repos/builtin/packages/bamutil/package.py

@@ -13,17 +13,18 @@ class Bamutil(MakefilePackage):
     """
 
     homepage = "https://genome.sph.umich.edu/wiki/BamUtil"
-    url      = "https://genome.sph.umich.edu/w/images/7/70/BamUtilLibStatGen.1.0.13.tgz"
+    url      = "https://github.com/statgen/bamUtil/archive/refs/tags/v1.0.15.tar.gz"
+    git      = "https://github.com/statgen/bamUtil.git"
+    maintainers = ['snehring']
 
-    version('1.0.13', sha256='16c1d01c37d1f98b98c144f3dd0fda6068c1902f06bd0989f36ce425eb0c592b')
+    version('1.0.15', sha256='24ac4bdb81eded6e33f60dba85ec3d32ebdb06d42f75df775c2632bbfbd8cce9')
+    version('1.0.13', sha256='16c1d01c37d1f98b98c144f3dd0fda6068c1902f06bd0989f36ce425eb0c592b',
+            url='https://genome.sph.umich.edu/w/images/7/70/BamUtilLibStatGen.1.0.13.tgz')
 
-    depends_on('zlib', type=('build', 'link'))
+    depends_on('zlib')
+    depends_on('git', type='build', when='@1.0.15:')
 
-    # Looks like this will be fixed in 1.0.14.
-    # https://github.com/statgen/libStatGen/issues/9
-    patch('libstatgen-issue-9.patch', when='@1.0.13:')
-    # These are fixed in the standalone libStatGen,
-    # but bamutil@1.0.13 embeds its own copy, so fix 'em here.
+    patch('libstatgen-issue-9.patch', when='@1.0.13')
     patch('libstatgen-issue-19.patch', when='@1.0.13')
     patch('libstatgen-issue-17.patch', when='@1.0.13')
     patch('libstatgen-issue-7.patch', when='@1.0.13')
@@ -31,6 +32,15 @@ class Bamutil(MakefilePackage):
 
     parallel = False
 
+    @when('@1.0.15')
+    def edit(self, spec, prefix):
+        filter_file('git://', 'https://', 'Makefile.inc', String=True)
+
+    @when('@1.0.15:')
+    def build(self, spec, prefix):
+        make('cloneLib')
+        make()
+
     @property
     def install_targets(self):
         return ['install', 'INSTALLDIR={0}'.format(self.prefix.bin)]