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ncbi-rmblastn: switching urls from ftp to https (#38490)

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snehring 2023-06-20 15:03:48 -05:00 committed by GitHub
parent d0e843ce03
commit 6755b74d22
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1 changed files with 7 additions and 3 deletions
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10
var/spack/repos/builtin/packages/ncbi-rmblastn/package.py
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@ -10,7 +10,9 @@ class NcbiRmblastn(AutotoolsPackage):
"""RMBlast search engine for NCBI""" """RMBlast search engine for NCBI"""
homepage = "https://www.repeatmasker.org/rmblast/" homepage = "https://www.repeatmasker.org/rmblast/"
url = "ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.9.0/ncbi-blast-2.9.0+-src.tar.gz" url = (
"https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.9.0/ncbi-blast-2.9.0+-src.tar.gz"
)
version("2.14.0", sha256="bf477f1b0c3b82f0b7a7094bf003a9a83e37e3b0716c1df799060c4feab17500") version("2.14.0", sha256="bf477f1b0c3b82f0b7a7094bf003a9a83e37e3b0716c1df799060c4feab17500")
version("2.11.0", sha256="d88e1858ae7ce553545a795a2120e657a799a6d334f2a07ef0330cc3e74e1954") version("2.11.0", sha256="d88e1858ae7ce553545a795a2120e657a799a6d334f2a07ef0330cc3e74e1954")
@ -26,7 +28,7 @@ class NcbiRmblastn(AutotoolsPackage):
# The patch is downloaded and unzipped in the ncbi-rmblastn Spack package # The patch is downloaded and unzipped in the ncbi-rmblastn Spack package
# directory to make it available for the patch directive. # directory to make it available for the patch directive.
patch( patch(
"http://www.repeatmasker.org/rmblast/isb-2.14.0+-rmblast.patch.gz", "https://www.repeatmasker.org/rmblast/isb-2.14.0+-rmblast.patch.gz",
sha256="cd083f256551c6d6021897a1b08e023976e82c59576787d4885f57d36f9e6fdf", sha256="cd083f256551c6d6021897a1b08e023976e82c59576787d4885f57d36f9e6fdf",
archive_sha256="9de0e67467a4cffdde0c5f67e3658fb52ed313e4550f9a36a251bddb2ba33f49", archive_sha256="9de0e67467a4cffdde0c5f67e3658fb52ed313e4550f9a36a251bddb2ba33f49",
when="@2.14.0", when="@2.14.0",
@ -56,7 +58,9 @@ class NcbiRmblastn(AutotoolsPackage):
configure_directory = "c++" configure_directory = "c++"
def url_for_version(self, version): def url_for_version(self, version):
url = "ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/{0}/ncbi-blast-{1}+-src.tar.gz" url = (
"https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/{0}/ncbi-blast-{1}+-src.tar.gz"
)
return url.format(version, version) return url.format(version, version)
def configure_args(self): def configure_args(self):