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angsd: fix typo in variants (#23081)

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Massimiliano Culpo 2021-04-20 20:20:23 +02:00 committed by GitHub
parent 7dc9a0082b
commit 67afe7016f
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1 changed files with 9 additions and 8 deletions
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15
var/spack/repos/builtin/packages/angsd/package.py
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@ -2,16 +2,17 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details. # Spack Project Developers. See the top-level COPYRIGHT file for details.
# #
# SPDX-License-Identifier: (Apache-2.0 OR MIT) # SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import * from spack import *
class Angsd(MakefilePackage): class Angsd(MakefilePackage):
"""Angsd is a program for analysing NGS data. The software can handle a """Angsd is a program for analysing NGS data.
number of different input types from mapped reads to imputed genotype
probabilities. Most methods take genotype uncertainty into account The software can handle a number of different input types from mapped
instead of basing the analysis on called genotypes. This is especially reads to imputed genotype probabilities. Most methods take genotype
useful for low and medium depth data.""" uncertainty into account instead of basing the analysis on called
genotypes. This is especially useful for low and medium depth data.
"""
homepage = "https://github.com/ANGSD/angsd" homepage = "https://github.com/ANGSD/angsd"
url = "https://github.com/ANGSD/angsd/archive/0.919.tar.gz" url = "https://github.com/ANGSD/angsd/archive/0.919.tar.gz"
@ -29,7 +30,7 @@ class Angsd(MakefilePackage):
depends_on('lzma') depends_on('lzma')
depends_on('curl') depends_on('curl')
depends_on('r', type='run', when='+rlib') depends_on('r', type='run', when='+r')
def setup_run_environment(self, env): def setup_run_environment(self, env):
env.set('R_LIBS', self.prefix.R) env.set('R_LIBS', self.prefix.R)