dealii: Reorganize package and add some new settings (#19137)
New variants: - cxxstd - examples
This commit is contained in:
Jean-Paul Pelteret
GitHub
parent
35a9626ae9
commit
69eb51dbfe
@ -22,6 +22,8 @@ class Dealii(CMakePackage, CudaPackage):
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# only add for immediate deps.
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transitive_rpaths = False
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generator = 'Ninja'
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version('master', branch='master')
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version('9.2.0', sha256='d05a82fb40f1f1e24407451814b5a6004e39366a44c81208b1ae9d65f3efa43a')
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version('9.1.1', sha256='fc5b483f7fe58dfeb52d05054011280f115498e337af3e085bf272fd1fd81276')
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@ -37,26 +39,51 @@ class Dealii(CMakePackage, CudaPackage):
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version('8.2.1', sha256='d75674e45fe63cd9fa294460fe45228904d51a68f744dbb99cd7b60720f3b2a0')
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version('8.1.0', sha256='d666bbda2a17b41b80221d7029468246f2658051b8c00d9c5907cd6434c4df99')
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variant('mpi', default=True, description='Compile with MPI')
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# Configuration variants
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variant('build_type', default='DebugRelease',
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description='The build type to build',
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values=('Debug', 'Release', 'DebugRelease'))
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variant('cxxstd', default='default', multi=False,
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description='Compile using the specified C++ standard',
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values=('default', '11', '14', '17'))
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variant('doc', default=False,
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description='Compile with documentation')
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variant('examples', default=True,
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description='Compile tutorial programs')
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variant('int64', default=False,
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description='Compile with 64 bit indices support')
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variant('mpi', default=True,
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description='Compile with MPI')
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variant('optflags', default=False,
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description='Compile using additional optimization flags')
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variant('python', default=False,
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description='Compile with Python bindings')
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# Package variants
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variant('assimp', default=True,
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description='Compile with Assimp')
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variant('arpack', default=True,
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description='Compile with Arpack and PArpack (only with MPI)')
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variant('adol-c', default=True,
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description='Compile with Adol-c')
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variant('doc', default=False,
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description='Compile with documentation')
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variant('ginkgo', default=True, description='Compile with Ginkgo')
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variant('gmsh', default=True, description='Compile with GMSH')
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variant('gsl', default=True, description='Compile with GSL')
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description='Compile with ADOL-C')
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variant('ginkgo', default=True,
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description='Compile with Ginkgo')
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variant('gmsh', default=True,
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description='Compile with GMSH')
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variant('gsl', default=True,
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description='Compile with GSL')
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variant('hdf5', default=True,
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description='Compile with HDF5 (only with MPI)')
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variant('metis', default=True, description='Compile with Metis')
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variant('muparser', default=True, description='Compile with muParser')
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variant('nanoflann', default=True, description='Compile with Nanoflann')
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variant('netcdf', default=True,
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variant('metis', default=True,
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description='Compile with Metis')
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variant('muparser', default=True,
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description='Compile with muParser')
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variant('nanoflann', default=True,
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description='Compile with Nanoflann')
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variant('netcdf', default=False,
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description='Compile with Netcdf (only with MPI)')
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variant('oce', default=True, description='Compile with OCE')
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variant('oce', default=True,
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description='Compile with OCE')
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variant('p4est', default=True,
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description='Compile with P4est (only with MPI)')
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variant('petsc', default=True,
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@ -73,15 +100,6 @@ class Dealii(CMakePackage, CudaPackage):
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description='Compile with multi-threading via TBB')
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variant('trilinos', default=True,
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description='Compile with Trilinos (only with MPI)')
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variant('python', default=False,
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description='Compile with Python bindings')
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variant('int64', default=False,
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description='Compile with 64 bit indices support')
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variant('optflags', default=False,
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description='Compile using additional optimization flags')
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variant('build_type', default='DebugRelease',
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description='The build type to build',
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values=('Debug', 'Release', 'DebugRelease'))
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# required dependencies, light version
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depends_on('blas')
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@ -111,14 +129,28 @@ class Dealii(CMakePackage, CudaPackage):
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when='@1.68.0'),
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],
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when='+python')
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# bzip2 is not needed since 9.0
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depends_on('bzip2', when='@:8.99')
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# The std::auto_ptr is removed in the C++ 17 standard.
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# See https://github.com/dealii/dealii/issues/4662
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# and related topics discussed for other software libraries.
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depends_on('boost cxxstd=11', when='cxxstd=11')
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depends_on('boost cxxstd=14', when='cxxstd=14')
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depends_on('boost cxxstd=17', when='cxxstd=17')
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depends_on('bzip2', when='@:8.99')
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depends_on('lapack')
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depends_on('ninja', type='build')
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depends_on('suite-sparse')
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depends_on('zlib')
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# optional dependencies
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# Optional dependencies: Configuration
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depends_on('cuda@8:', when='+cuda')
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depends_on('cmake@3.9:', when='+cuda', type='build')
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# older version of deal.II do not build with Cmake 3.10, see
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# https://github.com/dealii/dealii/issues/5510
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depends_on('cmake@:3.9.99', when='@:8.99', type='build')
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depends_on('mpi', when='+mpi')
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depends_on('python', when='@8.5.0:+python')
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# Optional dependencies: Packages
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depends_on('adol-c@2.6.4:', when='@9.0:+adol-c')
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depends_on('arpack-ng+mpi', when='+arpack+mpi')
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depends_on('assimp', when='@9.0:+assimp')
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@ -129,17 +161,12 @@ class Dealii(CMakePackage, CudaPackage):
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depends_on('gsl', when='@8.5.0:+gsl')
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# FIXME: next line fixes concretization with petsc
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depends_on('hdf5+mpi+hl+fortran', when='+hdf5+mpi+petsc')
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depends_on('hdf5+mpi+hl', when='+hdf5+mpi~petsc')
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depends_on('cuda@8:', when='+cuda')
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depends_on('cmake@3.9:', when='+cuda', type='build')
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# older version of deal.II do not build with Cmake 3.10, see
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# https://github.com/dealii/dealii/issues/5510
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depends_on('cmake@:3.9.99', when='@:8.99', type='build')
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depends_on('hdf5+mpi+hl', when='+hdf5+mpi~petsc')
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# FIXME: concretizer bug. The two lines mimic what comes from PETSc
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# but we should not need it
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depends_on('metis@5:+int64', when='+metis+int64')
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depends_on('metis@5:~int64', when='+metis~int64')
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depends_on('muparser', when='+muparser')
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depends_on('muparser', when='+muparser')
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# Nanoflann support has been removed after 9.2.0
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depends_on('nanoflann', when='@9.0:9.2+nanoflann')
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depends_on('netcdf-c+mpi', when='+netcdf+mpi')
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@ -149,7 +176,6 @@ class Dealii(CMakePackage, CudaPackage):
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depends_on('petsc+mpi~int64', when='+petsc+mpi~int64')
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depends_on('petsc+mpi+int64', when='+petsc+mpi+int64')
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depends_on('petsc@:3.6.4', when='@:8.4.1+petsc+mpi')
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depends_on('python', when='@8.5.0:+python')
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depends_on('scalapack', when='@9.0:+scalapack')
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depends_on('slepc', when='+slepc+petsc+mpi')
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depends_on('slepc@:3.6.3', when='@:8.4.1+slepc+petsc+mpi')
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@ -165,7 +191,8 @@ class Dealii(CMakePackage, CudaPackage):
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# depends_on("symengine@0.4: build_type=Release", when="@9.1:+symengine+trilinos^trilinos~debug") # NOQA: ignore=E501
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# depends_on("symengine@0.4: build_type=Debug", when="@9.1:+symengine+trilinos^trilinos+debug") # NOQA: ignore=E501
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depends_on('symengine@0.4:', when='@9.1:+symengine')
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depends_on('tbb', when='+threads')
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depends_on('symengine@0.6:', when='@9.2:+symengine')
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depends_on('tbb', when='+threads')
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# do not require +rol to make concretization of xsdk possible
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depends_on('trilinos+amesos+aztec+epetra+ifpack+ml+muelu+sacado+teuchos', when='+trilinos+mpi~int64~cuda')
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depends_on('trilinos+amesos+aztec+epetra+ifpack+ml+muelu+sacado+teuchos~hypre', when='+trilinos+mpi+int64~cuda')
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@ -191,11 +218,16 @@ class Dealii(CMakePackage, CudaPackage):
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sha256='6f876dc8eadafe2c4ec2a6673864fb451c6627ca80511b6e16f3c401946fdf33',
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when='@9.0.0:9.1.1')
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# check that the combination of variants makes sense
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# 64-bit BLAS:
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for p in ['openblas', 'intel-mkl', 'intel-parallel-studio+mkl']:
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conflicts('^{0}+ilp64'.format(p), when='@:8.5.1',
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msg='64bit BLAS is only supported from 9.0.0')
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# Check for sufficiently modern versions
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conflicts('cxxstd=98', when='@9.0:')
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conflicts('cxxstd=11', when='@9.3:')
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# interfaces added in 8.5.0:
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for p in ['gsl', 'python']:
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conflicts('+{0}'.format(p), when='@:8.4.2',
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msg='The interface to {0} is supported from version 8.5.0 '
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'onwards. Please explicitly disable this variant '
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'via ~{0}'.format(p))
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# interfaces added in 9.0.0:
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for p in ['assimp', 'gmsh', 'nanoflann', 'scalapack', 'sundials',
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@ -212,24 +244,16 @@ class Dealii(CMakePackage, CudaPackage):
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'onwards. Please explicitly disable this variant '
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'via ~{0}'.format(p))
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# interfaces removed in 9.3.0:
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conflicts('+nanoflann', when='@9.3.0:',
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msg='The interface to nanoflann was removed from version 9.3.0. '
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'Please explicitly disable this variant via ~nanoflann')
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conflicts('+slepc', when='~petsc',
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msg='It is not possible to enable slepc interfaces '
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'without petsc.')
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conflicts('+adol-c', when='^trilinos+chaco',
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msg='symbol clash between the ADOL-C library and '
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'Trilinos SEACAS Chaco.')
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# interfaces added in 8.5.0:
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for p in ['gsl', 'python']:
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conflicts('+{0}'.format(p), when='@:8.4.2',
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msg='The interface to {0} is supported from version 8.5.0 '
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'onwards. Please explicitly disable this variant '
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'via ~{0}'.format(p))
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# check that the combination of variants makes sense
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# 64-bit BLAS:
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for p in ['openblas', 'intel-mkl', 'intel-parallel-studio+mkl']:
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conflicts('^{0}+ilp64'.format(p), when='@:8.5.1',
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msg='64bit BLAS is only supported from 9.0.0')
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# MPI requirements:
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for p in ['arpack', 'hdf5', 'netcdf', 'p4est', 'petsc', 'scalapack',
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@ -238,6 +262,15 @@ class Dealii(CMakePackage, CudaPackage):
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msg='To enable {0} it is necessary to build deal.II with '
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'MPI support enabled.'.format(p))
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# Optional dependencies:
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conflicts('+adol-c', when='^trilinos+chaco',
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msg='symbol clash between the ADOL-C library and '
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'Trilinos SEACAS Chaco.')
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conflicts('+slepc', when='~petsc',
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msg='It is not possible to enable slepc interfaces '
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'without petsc.')
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def cmake_args(self):
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spec = self.spec
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options = []
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@ -246,10 +279,20 @@ def cmake_args(self):
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# debug and release flags
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cxx_flags = []
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# Set directory structure:
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if spec.satisfies('@:8.2.1'):
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options.extend(['-DDEAL_II_COMPONENT_COMPAT_FILES=OFF'])
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else:
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options.extend([
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'-DDEAL_II_EXAMPLES_RELDIR=share/deal.II/examples',
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'-DDEAL_II_DOCREADME_RELDIR=share/deal.II/',
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'-DDEAL_II_DOCHTML_RELDIR=share/deal.II/doc'
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])
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# Required dependencies
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lapack_blas_libs = spec['lapack'].libs + spec['blas'].libs
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lapack_blas_headers = spec['lapack'].headers + spec['blas'].headers
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options.extend([
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'-DDEAL_II_COMPONENT_EXAMPLES=ON',
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'-DBOOST_DIR=%s' % spec['boost'].prefix,
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# CMake's FindBlas/Lapack may pickup system's blas/lapack instead
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# of Spack's. Be more specific to avoid this.
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@ -263,30 +306,6 @@ def cmake_args(self):
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'-DDEAL_II_ALLOW_BUNDLED=OFF'
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])
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if '+threads' in spec:
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options.append('-DDEAL_II_WITH_THREADS:BOOL=ON')
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else:
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options.extend(['-DDEAL_II_WITH_THREADS:BOOL=OFF'])
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if (spec.satisfies('^intel-parallel-studio+tbb')
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and '+threads' in spec):
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# deal.II/cmake will have hard time picking up TBB from Intel.
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tbb_ver = '.'.join(('%s' % spec['tbb'].version).split('.')[1:])
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options.extend([
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'-DTBB_FOUND=true',
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'-DTBB_VERSION=%s' % tbb_ver,
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'-DTBB_INCLUDE_DIRS=%s' % ';'.join(
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spec['tbb'].headers.directories),
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'-DTBB_LIBRARIES=%s' % spec['tbb'].libs.joined(';')
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])
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else:
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options.append('-DTBB_DIR=%s' % spec['tbb'].prefix)
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if (spec.satisfies('^openblas+ilp64') or
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spec.satisfies('^intel-mkl+ilp64') or
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spec.satisfies('^intel-parallel-studio+mkl+ilp64')):
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options.append('-DLAPACK_WITH_64BIT_BLAS_INDICES=ON')
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if spec.satisfies('@:8.99'):
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options.extend([
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# Cmake may still pick up system's bzip2, fix this:
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@ -295,6 +314,24 @@ def cmake_args(self):
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'-DBZIP2_LIBRARIES=%s' % spec['bzip2'].libs.joined(';')
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])
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# Doxygen documentation
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options.append(self.define_from_variant(
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'DEAL_II_COMPONENT_DOCUMENTATION', 'doc')
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)
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# Examples / tutorial programs
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options.append(self.define_from_variant(
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'DEAL_II_COMPONENT_EXAMPLES', 'examples')
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)
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# Enforce the specified C++ standard
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if spec.variants['cxxstd'].value != 'default':
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cxxstd = spec.variants['cxxstd'].value
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options.append(
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'-DDEAL_II_WITH_CXX{0}:BOOL=ON'.format(cxxstd)
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)
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# Performance
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# Set recommended flags for maximum (matrix-free) performance, see
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# https://groups.google.com/forum/?fromgroups#!topic/dealii/3Yjy8CBIrgU
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if spec.satisfies('%gcc'):
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@ -304,31 +341,15 @@ def cmake_args(self):
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elif spec.satisfies('%clang') or spec.satisfies('%apple-clang'):
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cxx_flags_release.extend(['-O3', '-ffp-contract=fast'])
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# Python bindings
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if spec.satisfies('@8.5.0:'):
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options.extend([
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'-DDEAL_II_COMPONENT_PYTHON_BINDINGS=%s' %
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('ON' if '+python' in spec else 'OFF')
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])
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if '+python' in spec:
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python_exe = spec['python'].command.path
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python_library = spec['python'].libs[0]
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python_include = spec['python'].headers.directories[0]
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options.extend([
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'-DPYTHON_EXECUTABLE=%s' % python_exe,
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'-DPYTHON_INCLUDE_DIR=%s' % python_include,
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'-DPYTHON_LIBRARY=%s' % python_library
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])
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# 64 bit indices
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options.append(self.define_from_variant(
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'DEAL_II_WITH_64BIT_INDICES', 'int64')
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)
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# Set directory structure:
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if spec.satisfies('@:8.2.1'):
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options.extend(['-DDEAL_II_COMPONENT_COMPAT_FILES=OFF'])
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else:
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options.extend([
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'-DDEAL_II_EXAMPLES_RELDIR=share/deal.II/examples',
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'-DDEAL_II_DOCREADME_RELDIR=share/deal.II/',
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'-DDEAL_II_DOCHTML_RELDIR=share/deal.II/doc'
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])
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if (spec.satisfies('^openblas+ilp64') or
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spec.satisfies('^intel-mkl+ilp64') or
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spec.satisfies('^intel-parallel-studio+mkl+ilp64')):
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options.append('-DLAPACK_WITH_64BIT_BLAS_INDICES=ON')
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# CUDA
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if '+cuda' in spec:
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@ -362,12 +383,49 @@ def cmake_args(self):
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'-DCMAKE_C_COMPILER=%s' % spec['mpi'].mpicc,
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'-DCMAKE_CXX_COMPILER=%s' % spec['mpi'].mpicxx,
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'-DCMAKE_Fortran_COMPILER=%s' % spec['mpi'].mpifc,
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'-DMPI_C_COMPILER=%s' % spec['mpi'].mpicc,
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'-DMPI_CXX_COMPILER=%s' % spec['mpi'].mpicxx,
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'-DMPI_Fortran_COMPILER=%s' % spec['mpi'].mpifc,
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])
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else:
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options.extend([
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'-DDEAL_II_WITH_MPI:BOOL=OFF',
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])
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# Python bindings
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if spec.satisfies('@8.5.0:'):
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options.append(self.define_from_variant(
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'DEAL_II_COMPONENT_PYTHON_BINDINGS', 'python')
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)
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if '+python' in spec:
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python_exe = spec['python'].command.path
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python_library = spec['python'].libs[0]
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python_include = spec['python'].headers.directories[0]
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options.extend([
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'-DPYTHON_EXECUTABLE=%s' % python_exe,
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'-DPYTHON_INCLUDE_DIR=%s' % python_include,
|
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'-DPYTHON_LIBRARY=%s' % python_library
|
||||
])
|
||||
|
||||
# Threading
|
||||
options.append(self.define_from_variant(
|
||||
'DEAL_II_WITH_THREADS', 'threads')
|
||||
)
|
||||
|
||||
if '+threads' in spec:
|
||||
if (spec.satisfies('^intel-parallel-studio+tbb')):
|
||||
# deal.II/cmake will have hard time picking up TBB from Intel.
|
||||
tbb_ver = '.'.join(('%s' % spec['tbb'].version).split('.')[1:])
|
||||
options.extend([
|
||||
'-DTBB_FOUND=true',
|
||||
'-DTBB_VERSION=%s' % tbb_ver,
|
||||
'-DTBB_INCLUDE_DIRS=%s' % ';'.join(
|
||||
spec['tbb'].headers.directories),
|
||||
'-DTBB_LIBRARIES=%s' % spec['tbb'].libs.joined(';')
|
||||
])
|
||||
else:
|
||||
options.append('-DTBB_DIR=%s' % spec['tbb'].prefix)
|
||||
|
||||
# Optional dependencies for which library names are the same as CMake
|
||||
# variables:
|
||||
for library in (
|
||||
@ -384,7 +442,8 @@ def cmake_args(self):
|
||||
'-DDEAL_II_WITH_%s:BOOL=OFF' % library.upper()
|
||||
])
|
||||
|
||||
# adol-c
|
||||
# Optional dependencies that do not fit the above pattern:
|
||||
# ADOL-C
|
||||
if '+adol-c' in spec:
|
||||
options.extend([
|
||||
'-DADOLC_DIR=%s' % spec['adol-c'].prefix,
|
||||
@ -395,13 +454,7 @@ def cmake_args(self):
|
||||
'-DDEAL_II_WITH_ADOLC=OFF'
|
||||
])
|
||||
|
||||
# doxygen
|
||||
options.extend([
|
||||
'-DDEAL_II_COMPONENT_DOCUMENTATION=%s' %
|
||||
('ON' if '+doc' in spec else 'OFF'),
|
||||
])
|
||||
|
||||
# arpack
|
||||
# ARPACK
|
||||
if '+arpack' in spec and '+mpi' in spec:
|
||||
options.extend([
|
||||
'-DARPACK_DIR=%s' % spec['arpack-ng'].prefix,
|
||||
@ -413,6 +466,7 @@ def cmake_args(self):
|
||||
'-DDEAL_II_WITH_ARPACK=OFF'
|
||||
])
|
||||
|
||||
# NetCDF
|
||||
# since Netcdf is spread among two, need to do it by hand:
|
||||
if '+netcdf' in spec and '+mpi' in spec:
|
||||
netcdf = spec['netcdf-cxx'].libs + spec['netcdf-c'].libs
|
||||
@ -428,6 +482,7 @@ def cmake_args(self):
|
||||
'-DDEAL_II_WITH_NETCDF=OFF'
|
||||
])
|
||||
|
||||
# ScaLAPACK
|
||||
if '+scalapack' in spec:
|
||||
scalapack = spec['scalapack'].libs
|
||||
options.extend([
|
||||
@ -453,12 +508,8 @@ def cmake_args(self):
|
||||
'-DDEAL_II_WITH_OPENCASCADE=OFF'
|
||||
])
|
||||
|
||||
# 64 bit indices
|
||||
options.extend([
|
||||
'-DDEAL_II_WITH_64BIT_INDICES=%s' % ('+int64' in spec)
|
||||
])
|
||||
|
||||
# collect CXX flags:
|
||||
# As a final step, collect CXX flags that may have been
|
||||
# added anywhere above:
|
||||
if len(cxx_flags_release) > 0 and '+optflags' in spec:
|
||||
options.extend([
|
||||
'-DCMAKE_CXX_FLAGS_RELEASE:STRING=%s' % (
|
||||
|
||||
Loading…
Reference in New Issue
Block a user