Revert "added a bunch of packages and added submodule"
This reverts commit 79808da760.
This commit is contained in:
Gregory Becker
parent
86230b9ac8
commit
6ca1e5c4b0
1
.gitignore
vendored
1
.gitignore
vendored
@ -8,4 +8,3 @@
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/etc/spackconfig
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/share/spack/dotkit
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/share/spack/modules
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*.ropeproject
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4
.gitmodules
vendored
4
.gitmodules
vendored
@ -1,3 +1,3 @@
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[submodule "/lib/spack/spack/util/python_recipe_parser"]
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path = /lib/spack/spack/util/python_recipe_parser
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[submodule "utils/python_recipe_parser"]
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path = utils/python_recipe_parser
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url = https://github.com/karenyyng/spack_python_package_parser
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1
utils/python_recipe_parser
Submodule
1
utils/python_recipe_parser
Submodule
@ -0,0 +1 @@
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Subproject commit 3158074a2d74f99aa72289dfcf093b1b0ba4474e
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18
var/spack/packages/asciidoc/package.py
Normal file
18
var/spack/packages/asciidoc/package.py
Normal file
@ -0,0 +1,18 @@
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from spack import *
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class Asciidoc(Package):
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""" A presentable text document format for writing articles, UNIX man
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pages and other small to medium sized documents."""
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homepage = "http://asciidoc.org"
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url = "http://downloads.sourceforge.net/project/asciidoc/asciidoc/8.6.9/asciidoc-8.6.9.tar.gz"
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version('8.6.9', 'c59018f105be8d022714b826b0be130a')
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depends_on('libxml2')
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depends_on('libxslt')
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def install(self, spec, prefix):
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configure('--prefix=%s' % prefix)
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make()
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make("install")
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@ -14,6 +14,10 @@ class Boost(Package):
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list_url = "http://sourceforge.net/projects/boost/files/boost/"
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list_depth = 2
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version('1.59.0', '6aa9a5c6a4ca1016edd0ed1178e3cb87')
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version('1.58.0', 'b8839650e61e9c1c0a89f371dd475546')
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version('1.57.0', '1be49befbdd9a5ce9def2983ba3e7b76')
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version('1.56.0', 'a744cf167b05d72335f27c88115f211d')
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version('1.55.0', 'd6eef4b4cacb2183f2bf265a5a03a354')
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version('1.54.0', '15cb8c0803064faef0c4ddf5bc5ca279')
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version('1.53.0', 'a00d22605d5dbcfb4c9936a9b35bc4c2')
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16
var/spack/packages/bowtie2/bowtie2-2.5.patch
Normal file
16
var/spack/packages/bowtie2/bowtie2-2.5.patch
Normal file
@ -0,0 +1,16 @@
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--- Makefile 2015-02-26 10:50:00.000000000 -0800
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+++ Makefile.new 2015-07-29 18:03:59.891357399 -0700
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@@ -22,10 +22,10 @@
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#
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INC =
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-GCC_PREFIX = $(shell dirname `which gcc`)
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+GCC_PREFIX =
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GCC_SUFFIX =
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-CC = $(GCC_PREFIX)/gcc$(GCC_SUFFIX)
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-CPP = $(GCC_PREFIX)/g++$(GCC_SUFFIX)
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+CC = cc
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+CPP = c++
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CXX = $(CPP)
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HEADERS = $(wildcard *.h)
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BOWTIE_MM = 1
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24
var/spack/packages/bowtie2/package.py
Normal file
24
var/spack/packages/bowtie2/package.py
Normal file
@ -0,0 +1,24 @@
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from spack import *
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from glob import glob
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class Bowtie2(Package):
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"""Description"""
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homepage = "bowtie-bio.sourceforge.net/bowtie2/index.shtml"
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version('2.2.5','51fa97a862d248d7ee660efc1147c75f', url = "http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.5/bowtie2-2.2.5-source.zip")
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patch('bowtie2-2.5.patch',when='@2.2.5', level=0)
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def install(self, spec, prefix):
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make()
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mkdirp(prefix.bin)
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for bow in glob("bowtie2*"):
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install(bow, prefix.bin)
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# install('bowtie2',prefix.bin)
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# install('bowtie2-align-l',prefix.bin)
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# install('bowtie2-align-s',prefix.bin)
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# install('bowtie2-build',prefix.bin)
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# install('bowtie2-build-l',prefix.bin)
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# install('bowtie2-build-s',prefix.bin)
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# install('bowtie2-inspect',prefix.bin)
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# install('bowtie2-inspect-l',prefix.bin)
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# install('bowtie2-inspect-s',prefix.bin)
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17
var/spack/packages/cscope/package.py
Normal file
17
var/spack/packages/cscope/package.py
Normal file
@ -0,0 +1,17 @@
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from spack import *
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class Cscope(Package):
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"""Cscope is a developer's tool for browsing source code."""
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homepage = "http://http://cscope.sourceforge.net/"
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url = "http://downloads.sourceforge.net/project/cscope/cscope/15.8b/cscope-15.8b.tar.gz"
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version('15.8b', '8f9409a238ee313a96f9f87fe0f3b176')
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# Can be configured to use flex (not necessary)
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# ./configure --with-flex
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def install(self, spec, prefix):
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configure('--prefix=%s' % prefix)
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make()
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make("install")
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19
var/spack/packages/czmq/package.py
Normal file
19
var/spack/packages/czmq/package.py
Normal file
@ -0,0 +1,19 @@
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from spack import *
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class Czmq(Package):
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""" A C interface to the ZMQ library """
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homepage = "http://czmq.zeromq.org"
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url = "https://github.com/zeromq/czmq/archive/v3.0.2.tar.gz"
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version('3.0.2', '23e9885f7ee3ce88d99d0425f52e9be1', url='https://github.com/zeromq/czmq/archive/v3.0.2.tar.gz')
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depends_on('zeromq')
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def install(self, spec, prefix):
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bash = which("bash")
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bash("./autogen.sh")
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configure("--prefix=%s" % prefix)
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make()
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make("install")
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19
var/spack/packages/docbook-xml/package.py
Normal file
19
var/spack/packages/docbook-xml/package.py
Normal file
@ -0,0 +1,19 @@
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import os
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import glob
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from spack import *
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class DocbookXml(Package):
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"""Docbook DTD XML files."""
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homepage = "http://www.oasis-open.org/docbook"
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url = "http://www.oasis-open.org/docbook/xml/4.5/docbook-xml-4.5.zip"
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version('4.5', '03083e288e87a7e829e437358da7ef9e')
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def install(self, spec, prefix):
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cp = which('cp')
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install_args = ['-a', '-t', prefix]
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install_args.extend(glob.glob('*'))
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cp(*install_args)
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25
var/spack/packages/doxygen/package.py
Normal file
25
var/spack/packages/doxygen/package.py
Normal file
@ -0,0 +1,25 @@
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#------------------------------------------------------------------------------
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# Author: Justin Too <justin@doubleotoo.com>
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# Date: September 11, 2015
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#------------------------------------------------------------------------------
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from spack import *
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class Doxygen(Package):
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"""Doxygen is the de facto standard tool for generating documentation
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from annotated C++ sources, but it also supports other popular programming
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languages such as C, Objective-C, C#, PHP, Java, Python, IDL (Corba,
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Microsoft, and UNO/OpenOffice flavors), Fortran, VHDL, Tcl, and to some extent D..
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"""
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homepage = "http://www.stack.nl/~dimitri/doxygen/"
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url = "http://ftp.stack.nl/pub/users/dimitri/doxygen-1.8.10.src.tar.gz"
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version('1.8.10', '79767ccd986f12a0f949015efb5f058f')
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depends_on("cmake@2.8.12:")
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def install(self, spec, prefix):
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cmake('.', *std_cmake_args)
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make()
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make("install")
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@ -1,17 +0,0 @@
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from spack import *
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class Eigen(Package):
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"""Eigen is a C++ template library for linear algebra: matrices, vectors,
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numerical solvers, and related algorithms.."""
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homepage = "http://eigen.tuxfamily.org/"
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url = "http://bitbucket.org/eigen/eigen/get/3.2.5.tar.gz"
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version('3.2.5', '8cc513ac6ec687117acadddfcacf551b')
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def install(self, spec, prefix):
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import os
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os.system("mkdir ./build_dir && cd ./build_dir")
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cmake('../', *std_cmake_args)
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make()
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make("install")
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26
var/spack/packages/elfutils/package.py
Normal file
26
var/spack/packages/elfutils/package.py
Normal file
@ -0,0 +1,26 @@
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from spack import *
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class Elfutils(Package):
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"""elfutils is a collection of various binary tools such as
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eu-objdump, eu-readelf, and other utilities that allow you to
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inspect and manipulate ELF files. Refer to Table 5.Tools Included
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in elfutils for Red Hat Developer for a complete list of binary
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tools that are distributed with the Red Hat Developer Toolset
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version of elfutils."""
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homepage = "https://fedorahosted.org/elfutils/"
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version('0.163',
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git='git://git.fedorahosted.org/git/elfutils.git',
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tag='elfutils-0.163')
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provides('elf')
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def install(self, spec, prefix):
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autoreconf = which('autoreconf')
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autoreconf('-if')
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configure('--prefix=%s' % prefix, '--enable-maintainer-mode')
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make()
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make("install")
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18
var/spack/packages/fish/package.py
Normal file
18
var/spack/packages/fish/package.py
Normal file
@ -0,0 +1,18 @@
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from spack import *
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class Fish(Package):
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"""fish is a smart and user-friendly command line shell for OS X, Linux, and
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the rest of the family.
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"""
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homepage = "http://fishshell.com/"
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url = "http://fishshell.com/files/2.2.0/fish-2.2.0.tar.gz"
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list_url = homepage
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version('2.2.0', 'a76339fd14ce2ec229283c53e805faac48c3e99d9e3ede9d82c0554acfc7b77a')
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def install(self, spec, prefix):
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configure('--prefix=%s' % prefix)
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make()
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make("install")
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36
var/spack/packages/flux/package.py
Normal file
36
var/spack/packages/flux/package.py
Normal file
@ -0,0 +1,36 @@
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from spack import *
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import os
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class Flux(Package):
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""" A next-generation resource manager (pre-alpha) """
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homepage = "https://github.com/flux-framework/flux-core"
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url = "https://github.com/flux-framework/flux-core"
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version('master', branch='master', git='https://github.com/flux-framework/flux-core')
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# Also needs autotools, but should use the system version if available
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depends_on("zeromq@4.0.4:")
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depends_on("czmq@2.2:")
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depends_on("lua@5.1:5.1.99")
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depends_on("munge")
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depends_on("libjson-c")
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depends_on("libxslt")
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# TODO: This provides a catalog, hacked with environment below for now
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depends_on("docbook-xml")
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depends_on("asciidoc")
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depends_on("python")
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depends_on("py-cffi")
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def install(self, spec, prefix):
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# Bootstrap with autotools
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bash = which('bash')
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bash('./autogen.sh')
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# Fix asciidoc dependency on xml style sheets and whatnot
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os.environ['XML_CATALOG_FILES'] = os.path.join(spec['docbook-xml'].prefix,
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'catalog.xml')
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# Configure, compile & install
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configure("--prefix=" + prefix)
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make("install", "V=1")
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21
var/spack/packages/gflags/package.py
Normal file
21
var/spack/packages/gflags/package.py
Normal file
@ -0,0 +1,21 @@
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import os
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from spack import *
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class Gflags(Package):
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"""The gflags package contains a C++ library that implements
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commandline flags processing. It includes built-in support for
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standard types such as string and the ability to define flags
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in the source file in which they are used. Online documentation
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available at: https://gflags.github.io/gflags/"""
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homepage = "https://gflags.github.io/gflags"
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url = "https://github.com/gflags/gflags/archive/v2.1.2.tar.gz"
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version('2.1.2', 'ac432de923f9de1e9780b5254884599f')
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def install(self, spec, prefix):
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cmake("-DCMAKE_INSTALL_PREFIX=" + prefix,
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"-DBUILD_SHARED_LIBS=ON")
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make()
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make("test")
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make("install")
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17
var/spack/packages/ghostscript/package.py
Normal file
17
var/spack/packages/ghostscript/package.py
Normal file
@ -0,0 +1,17 @@
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from spack import *
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class Ghostscript(Package):
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"""an interpreter for the PostScript language and for PDF. """
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homepage = "http://ghostscript.com/"
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url = "http://downloads.ghostscript.com/public/ghostscript-9.16.tar.gz"
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version('9.16', '829319325bbdb83f5c81379a8f86f38f')
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parallel = False
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def install(self, spec, prefix):
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configure("--prefix=%s" %prefix, "--enable-shared")
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make()
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make("install")
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15
var/spack/packages/glog/package.py
Normal file
15
var/spack/packages/glog/package.py
Normal file
@ -0,0 +1,15 @@
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import os
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from spack import *
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class Glog(Package):
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"""C++ implementation of the Google logging module."""
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homepage = "https://github.com/google/glog"
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url = "https://github.com/google/glog/archive/v0.3.3.tar.gz"
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version('0.3.3', 'c1f86af27bd9c73186730aa957607ed0')
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def install(self, spec, prefix):
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configure("--prefix=" + prefix)
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make()
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make("install")
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@ -1,24 +1,21 @@
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from spack import *
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class Graphviz(Package):
|
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"""graph visualization software."""
|
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"""Graph Visualization Software"""
|
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homepage = "http://www.graphviz.org"
|
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url = "http://www.graphviz.org/pub/graphviz/stable/SOURCES/graphviz-2.38.0.tar.gz"
|
||||
|
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version('2.38.0', '5b6a829b2ac94efcd5fa3c223ed6d3ae')
|
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version('2.36.0', '1f41664dba0c93109ac8b71216bf2b57')
|
||||
|
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depends_on("cairo@1.1.10")
|
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depends_on("freetype@2.1.10")
|
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depends_on("fontconfig")
|
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depends_on("zlib@1.2.3")
|
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# depends_on("libpng@1.2.10")
|
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# depends_on("expat@2.0.0")
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# depends_on("gd@2.0.34")
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parallel = False
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||||
|
||||
depends_on("swig")
|
||||
depends_on("python")
|
||||
depends_on("ghostscript")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
configure('--prefix=%s' % prefix)
|
||||
configure("--prefix=%s" %prefix)
|
||||
|
||||
# FIXME: Add logic to build and install here
|
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make()
|
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make("install")
|
||||
|
||||
|
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29
var/spack/packages/leveldb/package.py
Normal file
29
var/spack/packages/leveldb/package.py
Normal file
@ -0,0 +1,29 @@
|
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import os
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import glob
|
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from spack import *
|
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|
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class Leveldb(Package):
|
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"""LevelDB is a fast key-value storage library written at Google
|
||||
that provides an ordered mapping from string keys to string values."""
|
||||
|
||||
homepage = "https://github.com/google/leveldb"
|
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url = "https://github.com/google/leveldb/archive/v1.18.tar.gz"
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||||
|
||||
version('1.18', '73770de34a2a5ab34498d2e05b2b7fa0')
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||||
|
||||
depends_on("snappy")
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||||
|
||||
def install(self, spec, prefix):
|
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make()
|
||||
|
||||
mkdirp(prefix.include)
|
||||
mkdirp(prefix.lib)
|
||||
|
||||
cp = which('cp')
|
||||
|
||||
# cp --preserve=links libleveldb.* prefix/lib
|
||||
args = glob.glob('libleveldb.*')
|
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args.append(prefix + '/lib')
|
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cp('--preserve=links', *args)
|
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|
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cp('-r', 'include/leveldb', prefix + '/include')
|
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@ -2,7 +2,7 @@
|
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|
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class Libdrm(Package):
|
||||
"""A userspace library for accessing the DRM, direct
|
||||
rendering manager, on Linux, BSD and other operating
|
||||
rendering manager, on Linux, BSD and other operating
|
||||
systems that support the ioctl interface."""
|
||||
|
||||
homepage = "http://dri.freedesktop.org/libdrm/" # no real website...
|
||||
@ -11,11 +11,8 @@ class Libdrm(Package):
|
||||
version('2.4.59', '105ac7af1afcd742d402ca7b4eb168b6')
|
||||
version('2.4.33', '86e4e3debe7087d5404461e0032231c8')
|
||||
|
||||
depends_on("libpciaccess")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
configure("--prefix=%s" % prefix)
|
||||
|
||||
make("clean")
|
||||
make()
|
||||
make("install")
|
||||
|
||||
@ -36,6 +36,8 @@ class Libelf(Package):
|
||||
version('0.8.13', '4136d7b4c04df68b686570afa26988ac')
|
||||
version('0.8.12', 'e21f8273d9f5f6d43a59878dc274fec7')
|
||||
|
||||
provides('elf')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
configure("--prefix=" + prefix,
|
||||
"--enable-shared",
|
||||
|
||||
@ -6,9 +6,9 @@ class Libffi(Package):
|
||||
to call any function specified by a call interface description at
|
||||
run time."""
|
||||
homepage = "https://sourceware.org/libffi/"
|
||||
url = "ftp://sourceware.org/pub/libffi/libffi-3.1.tar.gz"
|
||||
|
||||
version('3.1', 'f5898b29bbfd70502831a212d9249d10')
|
||||
|
||||
version('3.2.1','83b89587607e3eb65c70d361f13bab43',url = "ftp://sourceware.org/pub/libffi/libffi-3.2.1.tar.gz")
|
||||
#version('3.1', 'f5898b29bbfd70502831a212d9249d10',url = "ftp://sourceware.org/pub/libffi/libffi-3.1.tar.gz") # Has a bug $(lib64) instead of ${lib64} in libffi.pc
|
||||
|
||||
def install(self, spec, prefix):
|
||||
configure("--prefix=%s" % prefix)
|
||||
|
||||
14
var/spack/packages/libjson-c/package.py
Normal file
14
var/spack/packages/libjson-c/package.py
Normal file
@ -0,0 +1,14 @@
|
||||
from spack import *
|
||||
|
||||
class LibjsonC(Package):
|
||||
""" A JSON implementation in C """
|
||||
homepage = "https://github.com/json-c/json-c/wiki"
|
||||
url = "https://s3.amazonaws.com/json-c_releases/releases/json-c-0.11.tar.gz"
|
||||
|
||||
version('0.11', 'aa02367d2f7a830bf1e3376f77881e98')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
configure('--prefix=%s' % prefix)
|
||||
|
||||
make()
|
||||
make("install")
|
||||
@ -1,16 +1,21 @@
|
||||
from spack import *
|
||||
|
||||
class Libpciaccess(Package):
|
||||
"""Generic PCI access library"""
|
||||
homepage = "http://cgit.freedesktop.org/xorg/lib/libpciaccess/"
|
||||
url = "http://pkgs.fedoraproject.org/repo/pkgs/libpciaccess/libpciaccess-0.13.2.tar.bz2/b7c0d3afce14eedca57312a3141ec13a/libpciaccess-0.13.2.tar.bz2"
|
||||
"""Generic PCI access library."""
|
||||
|
||||
version('0.13.2', 'b7c0d3afce14eedca57312a3141ec13a')
|
||||
homepage = "http://cgit.freedesktop.org/xorg/lib/libpciaccess/"
|
||||
url = "http://cgit.freedesktop.org/xorg/lib/libpciaccess/"
|
||||
|
||||
version('0.13.4', git='http://anongit.freedesktop.org/git/xorg/lib/libpciaccess.git',
|
||||
tag='libpciaccess-0.13.4')
|
||||
|
||||
depends_on('autoconf')
|
||||
depends_on('libtool')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
import os
|
||||
os.system("autoconf")
|
||||
configure('--prefix=%s' % prefix)
|
||||
from subprocess import call
|
||||
call(["./autogen.sh"])
|
||||
configure("--prefix=%s" % prefix)
|
||||
|
||||
make()
|
||||
make("install")
|
||||
|
||||
19
var/spack/packages/libsodium/package.py
Normal file
19
var/spack/packages/libsodium/package.py
Normal file
@ -0,0 +1,19 @@
|
||||
from spack import *
|
||||
|
||||
class Libsodium(Package):
|
||||
"""Sodium is a modern, easy-to-use software library for encryption,
|
||||
decryption, signatures, password hashing and more."""
|
||||
homepage = "https://download.libsodium.org/doc/"
|
||||
url = "https://download.libsodium.org/libsodium/releases/libsodium-1.0.3.tar.gz"
|
||||
|
||||
version('1.0.3', 'b3bcc98e34d3250f55ae196822307fab')
|
||||
version('1.0.2', 'dc40eb23e293448c6fc908757738003f')
|
||||
version('1.0.1', '9a221b49fba7281ceaaf5e278d0f4430')
|
||||
version('1.0.0', '3093dabe4e038d09f0d150cef064b2f7')
|
||||
version('0.7.1', 'c224fe3923d1dcfe418c65c8a7246316')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
configure("--prefix=%s" % prefix)
|
||||
|
||||
make()
|
||||
make("install")
|
||||
@ -9,11 +9,12 @@ class Libxml2(Package):
|
||||
|
||||
version('2.9.2', '9e6a9aca9d155737868b3dc5fd82f788')
|
||||
|
||||
extends('python')
|
||||
depends_on('zlib')
|
||||
depends_on('xz')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
configure("--prefix=%s" % prefix,
|
||||
"--without-python")
|
||||
configure("--prefix=%s" % prefix)
|
||||
|
||||
make()
|
||||
make("install")
|
||||
|
||||
39
var/spack/packages/lmdb/package.py
Normal file
39
var/spack/packages/lmdb/package.py
Normal file
@ -0,0 +1,39 @@
|
||||
import os
|
||||
from spack import *
|
||||
|
||||
class Lmdb(Package):
|
||||
"""Read-only mirror of official repo on openldap.org. Issues and
|
||||
pull requests here are ignored. Use OpenLDAP ITS for issues.
|
||||
http://www.openldap.org/software/repo.html"""
|
||||
|
||||
|
||||
homepage = "http://www.openldap.org/software/repo.html"
|
||||
url = "https://github.com/LMDB/lmdb/archive/LMDB_0.9.16.tar.gz"
|
||||
|
||||
version('0.9.16', '0de89730b8f3f5711c2b3a4ba517b648')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
os.chdir('libraries/liblmdb')
|
||||
|
||||
make()
|
||||
|
||||
mkdirp(prefix.bin)
|
||||
mkdirp(prefix + '/man/man1')
|
||||
mkdirp(prefix.lib)
|
||||
mkdirp(prefix.include)
|
||||
|
||||
bins = ['mdb_stat', 'mdb_copy', 'mdb_dump', 'mdb_load']
|
||||
for f in bins:
|
||||
install(f, prefix.bin)
|
||||
|
||||
mans = ['mdb_stat.1', 'mdb_copy.1', 'mdb_dump.1', 'mdb_load.1']
|
||||
for f in mans:
|
||||
install(f, prefix + '/man/man1')
|
||||
|
||||
libs = ['liblmdb.a', 'liblmdb.so']
|
||||
for f in libs:
|
||||
install(f, prefix.lib)
|
||||
|
||||
includes = ['lmdb.h']
|
||||
for f in includes:
|
||||
install(f, prefix.include)
|
||||
26
var/spack/packages/lua/package.py
Normal file
26
var/spack/packages/lua/package.py
Normal file
@ -0,0 +1,26 @@
|
||||
from spack import *
|
||||
import os
|
||||
|
||||
class Lua(Package):
|
||||
""" The Lua programming language interpreter and library """
|
||||
homepage = "http://www.lua.org"
|
||||
url = "http://www.lua.org/ftp/lua-5.1.5.tar.gz"
|
||||
|
||||
version('5.3.1', '797adacada8d85761c079390ff1d9961')
|
||||
version('5.3.0', 'a1b0a7e92d0c85bbff7a8d27bf29f8af')
|
||||
version('5.2.4', '913fdb32207046b273fdb17aad70be13')
|
||||
version('5.2.3', 'dc7f94ec6ff15c985d2d6ad0f1b35654')
|
||||
version('5.2.2', 'efbb645e897eae37cad4344ce8b0a614')
|
||||
version('5.2.1', 'ae08f641b45d737d12d30291a5e5f6e3')
|
||||
version('5.2.0', 'f1ea831f397214bae8a265995ab1a93e')
|
||||
version('5.1.5', '2e115fe26e435e33b0d5c022e4490567')
|
||||
version('5.1.4', 'd0870f2de55d59c1c8419f36e8fac150')
|
||||
version('5.1.3', 'a70a8dfaa150e047866dc01a46272599')
|
||||
|
||||
depends_on('ncurses')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
make('INSTALL_TOP=%s' % prefix,
|
||||
'MYLDFLAGS=-L%s/lib' % spec['ncurses'].prefix,
|
||||
'linux',
|
||||
'install')
|
||||
@ -1,7 +1,7 @@
|
||||
from spack import *
|
||||
|
||||
class Mesa(Package):
|
||||
"""Mesa is an open-source implementation of the OpenGL
|
||||
"""Mesa is an open-source implementation of the OpenGL
|
||||
specification - a system for rendering interactive 3D graphics."""
|
||||
|
||||
homepage = "http://www.mesa3d.org"
|
||||
@ -11,9 +11,10 @@ class Mesa(Package):
|
||||
# version('10.4.4', '8d863a3c209bf5116b2babfccccc68ce')
|
||||
version('8.0.5', 'cda5d101f43b8784fa60bdeaca4056f2')
|
||||
|
||||
# mesa 7.x, 8.x, 9.x
|
||||
# mesa 7.x, 8.x, 9.x
|
||||
depends_on("libdrm@2.4.33")
|
||||
depends_on("llvm@3.0")
|
||||
depends_on("libxml2")
|
||||
|
||||
# patch("llvm-fixes.patch") # using newer llvm
|
||||
|
||||
|
||||
@ -38,7 +38,6 @@ class Mpich(Package):
|
||||
provides('mpi@:3', when='@3:')
|
||||
provides('mpi@:1', when='@1:')
|
||||
|
||||
|
||||
def setup_dependent_environment(self, module, spec, dep_spec):
|
||||
"""For dependencies, make mpicc's use spack wrapper."""
|
||||
os.environ['MPICH_CC'] = 'cc'
|
||||
|
||||
20
var/spack/packages/munge/package.py
Normal file
20
var/spack/packages/munge/package.py
Normal file
@ -0,0 +1,20 @@
|
||||
from spack import *
|
||||
import os
|
||||
|
||||
class Munge(Package):
|
||||
""" MUNGE Uid 'N' Gid Emporium """
|
||||
homepage = "https://code.google.com/p/munge/"
|
||||
url = "https://github.com/dun/munge/releases/download/munge-0.5.11/munge-0.5.11.tar.bz2"
|
||||
|
||||
version('0.5.11', 'bd8fca8d5f4c1fcbef1816482d49ee01', url='https://github.com/dun/munge/releases/download/munge-0.5.11/munge-0.5.11.tar.bz2')
|
||||
|
||||
depends_on('openssl')
|
||||
depends_on('libgcrypt')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
os.makedirs(os.path.join(prefix, "lib/systemd/system"))
|
||||
configure("--prefix=%s" % prefix)
|
||||
|
||||
make()
|
||||
make("install")
|
||||
|
||||
@ -21,3 +21,11 @@ def install(self, spec, prefix):
|
||||
make()
|
||||
make("install")
|
||||
|
||||
configure("--prefix=%s" % prefix,
|
||||
"--with-shared",
|
||||
"--disable-widec",
|
||||
"--disable-pc-files",
|
||||
"--without-ada")
|
||||
make()
|
||||
make("install")
|
||||
|
||||
|
||||
@ -9,6 +9,8 @@ class NetlibBlas(Package):
|
||||
|
||||
version('3.5.0', 'b1d3e3e425b2e44a06760ff173104bdf')
|
||||
|
||||
variant('fpic', default=False, description="Build with -fpic compiler option")
|
||||
|
||||
# virtual dependency
|
||||
provides('blas')
|
||||
|
||||
@ -23,6 +25,10 @@ def patch(self):
|
||||
mf.filter('^LOADER.*', 'LOADER = f90')
|
||||
mf.filter('^CC =.*', 'CC = cc')
|
||||
|
||||
if '+fpic' in self.spec:
|
||||
mf.filter('^OPTS.*=.*', 'OPTS = -O2 -frecursive -fpic')
|
||||
mf.filter('^CFLAGS =.*', 'CFLAGS = -O3 -fpic')
|
||||
|
||||
|
||||
def install(self, spec, prefix):
|
||||
make('blaslib')
|
||||
|
||||
@ -1,6 +1,6 @@
|
||||
from spack import *
|
||||
|
||||
class Lapack(Package):
|
||||
class NetlibLapack(Package):
|
||||
"""
|
||||
LAPACK version 3.X is a comprehensive FORTRAN library that does
|
||||
linear algebra operations including matrix inversions, least
|
||||
@ -18,9 +18,16 @@ class Lapack(Package):
|
||||
version('3.4.0', '02d5706ec03ba885fc246e5fa10d8c70')
|
||||
version('3.3.1', 'd0d533ec9a5b74933c2a1e84eedc58b4')
|
||||
|
||||
variant('shared', default=False, description="Build shared library version")
|
||||
|
||||
# virtual dependency
|
||||
provides('lapack')
|
||||
|
||||
# blas is a virtual dependency.
|
||||
depends_on('blas')
|
||||
|
||||
depends_on('cmake')
|
||||
|
||||
# Doesn't always build correctly in parallel
|
||||
parallel = False
|
||||
|
||||
@ -39,7 +46,14 @@ def get_blas_libs(self):
|
||||
|
||||
def install(self, spec, prefix):
|
||||
blas_libs = ";".join(self.get_blas_libs())
|
||||
cmake(".", '-DBLAS_LIBRARIES=' + blas_libs, *std_cmake_args)
|
||||
cmake_args = [".", '-DBLAS_LIBRARIES=' + blas_libs]
|
||||
|
||||
if '+shared' in spec:
|
||||
cmake_args.append('-DBUILD_SHARED_LIBS=ON')
|
||||
|
||||
cmake_args += std_cmake_args
|
||||
|
||||
cmake(*cmake_args)
|
||||
make()
|
||||
make("install")
|
||||
|
||||
21
var/spack/packages/pidx/package.py
Normal file
21
var/spack/packages/pidx/package.py
Normal file
@ -0,0 +1,21 @@
|
||||
from spack import *
|
||||
|
||||
class Pidx(Package):
|
||||
"""PIDX Parallel I/O Library.
|
||||
|
||||
PIDX is an efficient parallel I/O library that reads and writes
|
||||
multiresolution IDX data files.
|
||||
"""
|
||||
|
||||
homepage = "http://www.cedmav.com/pidx"
|
||||
|
||||
version('1.0', git='https://github.com/sci-visus/PIDX.git',
|
||||
commit='6afa1cf71d1c41263296dc049c8fabaf73c296da')
|
||||
|
||||
depends_on("mpi")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
with working_dir('spack-build', create=True):
|
||||
cmake('..', *std_cmake_args)
|
||||
make()
|
||||
make("install")
|
||||
17
var/spack/packages/pkg-config/package.py
Normal file
17
var/spack/packages/pkg-config/package.py
Normal file
@ -0,0 +1,17 @@
|
||||
from spack import *
|
||||
|
||||
class PkgConfig(Package):
|
||||
"""pkg-config is a helper tool used when compiling applications and libraries"""
|
||||
homepage = "http://www.freedesktop.org/wiki/Software/pkg-config/"
|
||||
url = "http://pkgconfig.freedesktop.org/releases/pkg-config-0.28.tar.gz"
|
||||
|
||||
version('0.28', 'aa3c86e67551adc3ac865160e34a2a0d')
|
||||
|
||||
parallel = False
|
||||
|
||||
def install(self, spec, prefix):
|
||||
configure("--prefix=%s" %prefix, "--enable-shared")
|
||||
|
||||
make()
|
||||
make("install")
|
||||
|
||||
16
var/spack/packages/protobuf/package.py
Normal file
16
var/spack/packages/protobuf/package.py
Normal file
@ -0,0 +1,16 @@
|
||||
import os
|
||||
from spack import *
|
||||
|
||||
class Protobuf(Package):
|
||||
"""Google's data interchange format."""
|
||||
|
||||
homepage = "https://developers.google.com/protocol-buffers"
|
||||
url = "https://github.com/google/protobuf/releases/download/v2.5.0/protobuf-2.5.0.tar.bz2"
|
||||
|
||||
version('2.5.0', 'a72001a9067a4c2c4e0e836d0f92ece4')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
configure("--prefix=" + prefix)
|
||||
make()
|
||||
make("check")
|
||||
make("install")
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyCython(Package):
|
||||
"""The Cython compiler for writing C extensions for the Python language."""
|
||||
homepage = "http://www.cython.org"
|
||||
version("0.21.2", "d21adb870c75680dc857cd05d41046a4",
|
||||
url="https://pypi.python.org/packages/source/C/Cython/Cython-0.21.2.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -1,15 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyDistutils2(Package):
|
||||
"""Python Packaging Library."""
|
||||
|
||||
homepage = "https://hg.python.org/distutils2"
|
||||
url = "https://pypi.python.org/packages/source/D/Distutils2/Distutils2-1.0a4.tar.gz"
|
||||
|
||||
version('1.0a4', '52bc9dffb394970c27e02853ae3a3241')
|
||||
|
||||
depends_on("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python('setup.py', 'install', '--prefix=%s' % prefix)
|
||||
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyAstroml(Package):
|
||||
"""tools for machine learning and data mining in Astronomy"""
|
||||
homepage = "http://astroML.github.com"
|
||||
version("0.2", "85f558368546660564f20b30efafb024",
|
||||
url="https://pypi.python.org/packages/source/a/astroML/astroML-0.2.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyAstropy(Package):
|
||||
"""Community-developed python astronomy tools"""
|
||||
homepage = "http://astropy.org"
|
||||
version("0.4.2", "6dc4f643cde37ba0a8b4967dc8becee8",
|
||||
url="https://pypi.python.org/packages/source/a/astropy/astropy-0.4.2.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyAutopep8(Package):
|
||||
"""A tool that automatically formats Python code to conform to the PEP 8 style guide"""
|
||||
homepage = "https://github.com/hhatto/autopep8"
|
||||
version("1.1", "7998358d8f0efd77dcb2cc8e34e3cb5c",
|
||||
url="https://pypi.python.org/packages/source/a/autopep8/autopep8-1.1.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyCertifi(Package):
|
||||
"""Python package for providing Mozilla's CA Bundle."""
|
||||
homepage = "http://python-requests.org"
|
||||
version("14.05.14", "315ea4e50673a16ab047099f816fd32a",
|
||||
url="https://pypi.python.org/packages/source/c/certifi/certifi-14.05.14.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyDecorator(Package):
|
||||
"""Better living through Python with decorators"""
|
||||
homepage = "https://github.com/micheles/decorator"
|
||||
version("4.0.4", "dd3a0669e1e6f09699eefa2c7fbd9756",
|
||||
url="https://pypi.python.org/packages/source/d/decorator/decorator-4.0.4.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyEmcee(Package):
|
||||
"""Kick ass affine-invariant ensemble MCMC sampling"""
|
||||
homepage = "http://dan.iel.fm/emcee/"
|
||||
version("2.1.0", "c6b6fad05c824d40671d4a4fc58dfff7",
|
||||
url="https://pypi.python.org/packages/source/e/emcee/emcee-2.1.0.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -1,13 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyFitsio(Package):
|
||||
"""A full featured python library to read from and write to FITS files."""
|
||||
homepage = "https://github.com/esheldon/fitsio"
|
||||
version("0.9.7", "75fa05f999ae8f55c8290bd78ada49e7",
|
||||
url="https://pypi.python.org/packages/source/f/fitsio/fitsio-0.9.7.tar.gz")
|
||||
|
||||
extends("python")
|
||||
depends_on("py-numpy")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyGnureadline(Package):
|
||||
"""The standard Python readline extension statically linked against the GNU readline library."""
|
||||
homepage = "http://github.com/ludwigschwardt/python-gnureadline"
|
||||
version("6.3.3", "c4af83c9a3fbeac8f2da9b5a7c60e51c",
|
||||
url="https://pypi.python.org/packages/source/g/gnureadline/gnureadline-6.3.3.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -3,29 +3,14 @@
|
||||
class PyIpython(Package):
|
||||
"""IPython provides a rich toolkit to help you make the most out of using Python interactively."""
|
||||
homepage = "https://pypi.python.org/pypi/ipython"
|
||||
url = "https://pypi.python.org/packages/source/i/ipython/ipython-2.3.1.tar.gz"
|
||||
|
||||
version('3.0.0','b3f00f3c0be036fafef3b0b9d663f27e',
|
||||
url='https://pypi.python.org/packages/source/i/ipython/ipython-3.0.0.tar.gz')
|
||||
version('4.0.0','c2fecbcf1c0fbdc82625c77a50733dd6',
|
||||
url='https://pypi.python.org/packages/source/i/ipython/ipython-4.0.0.tar.gz')
|
||||
version('2.3.1', '2b7085525dac11190bfb45bb8ec8dcbf',
|
||||
url="https://pypi.python.org/packages/source/i/ipython/ipython-2.3.1.tar.gz")
|
||||
version('2.3.1', '2b7085525dac11190bfb45bb8ec8dcbf')
|
||||
version('3.1.0', 'a749d90c16068687b0ec45a27e72ef8f')
|
||||
version('3.2.1', 'f4c93d67ac4b2d4fc69df693b6f3c9e0',
|
||||
url='https://github.com/ipython/ipython/archive/rel-3.2.1.tar.gz')
|
||||
|
||||
extends('python')
|
||||
depends_on('py-pygments')
|
||||
depends_on('py-setuptools@18.1')
|
||||
depends_on('py-traitlets')
|
||||
depends_on('py-pyzmq')
|
||||
depends_on('py-pexpect')
|
||||
depends_on('py-tornado')
|
||||
depends_on('py-jinja2')
|
||||
depends_on('py-setuptools')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
import os
|
||||
# os.system("spack activate py-setuptools@18.1")
|
||||
# os.system("easy_install pip")
|
||||
# os.system("pip install ipython[notebook]")
|
||||
python('setup.py', 'install', '--prefix=%s' % prefix)
|
||||
|
||||
@ -1,27 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyIpython(Package):
|
||||
"""IPython provides a rich toolkit to help you make the most out of using Python interactively."""
|
||||
homepage = "https://pypi.python.org/pypi/ipython"
|
||||
|
||||
version('2.3.1', '2b7085525dac11190bfb45bb8ec8dcbf',
|
||||
url="https://pypi.python.org/packages/source/i/ipython/ipython-2.3.1.tar.gz")
|
||||
version('3.1.0', 'a749d90c16068687b0ec45a27e72ef8f')
|
||||
version('3.2.1', 'f4c93d67ac4b2d4fc69df693b6f3c9e0',
|
||||
url='https://github.com/ipython/ipython/archive/rel-3.2.1.tar.gz')
|
||||
|
||||
extends('python')
|
||||
depends_on('py-pygments')
|
||||
depends_on('py-setuptools@18.1')
|
||||
depends_on('py-traitlets')
|
||||
depends_on('py-pyzmq')
|
||||
depends_on('py-pexpect')
|
||||
depends_on('py-tornado')
|
||||
depends_on('py-Jinja2')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
import os
|
||||
# os.system("spack activate py-setuptools@18.1")
|
||||
# os.system("easy_install pip")
|
||||
# os.system("pip install ipython[notebook]")
|
||||
python('setup.py', 'install', '--prefix=%s' % prefix)
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyIpythonGenutils(Package):
|
||||
"""Vestigial utilities from IPython"""
|
||||
homepage = "http://ipython.org"
|
||||
version("0.1.0", "9a8afbe0978adbcbfcb3b35b2d015a56",
|
||||
url="https://pypi.python.org/packages/source/i/ipython_genutils/ipython_genutils-0.1.0.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyJoblib(Package):
|
||||
"""Lightweight pipelining: using Python functions as pipeline jobs."""
|
||||
homepage = "http://packages.python.org/joblib/"
|
||||
version("0.8.4", "90a1c25cc4dc4a8e3536093dbc35cff3",
|
||||
url="https://pypi.python.org/packages/source/j/joblib/joblib-0.8.4.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -1,16 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyJsonschema(Package):
|
||||
"""implementation of JSON Schema validation for Python"""
|
||||
homepage = "https://github.com/Julian/jsonschema"
|
||||
url = "https://pypi.python.org/packages/source/j/jsonschema/jsonschema-2.5.1.tar.gz"
|
||||
|
||||
version('2.4.0','661f85c3d23094afbb9ac3c0673840bf',
|
||||
url='https://pypi.python.org/packages/source/j/jsonschema/jsonschema-2.4.0.tar.gz')
|
||||
version('2.5.1', '374e848fdb69a3ce8b7e778b47c30640')
|
||||
|
||||
extends("python")
|
||||
depends_on("py-setuptools@18.1")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python('setup.py', 'install', '--prefix=%s' % prefix)
|
||||
@ -12,6 +12,7 @@ class PyMatplotlib(Package):
|
||||
extends('python', ignore=r'bin/nosetests.*$')
|
||||
|
||||
depends_on('py-pyside')
|
||||
depends_on('py-ipython')
|
||||
depends_on('py-pyparsing')
|
||||
depends_on('py-six')
|
||||
depends_on('py-dateutil')
|
||||
|
||||
@ -1,12 +1,17 @@
|
||||
from spack import *
|
||||
|
||||
class PyMock(Package):
|
||||
"""A Python Mocking and Patching Library for Testing"""
|
||||
homepage = "http://www.voidspace.org.uk/python/mock/"
|
||||
version("1.0.1", "c3971991738caa55ec7c356bbc154ee2",
|
||||
url="https://pypi.python.org/packages/source/m/mock/mock-1.0.1.tar.gz")
|
||||
"""mock is a library for testing in Python. It allows you to replace parts
|
||||
of your system under test with mock objects and make assertions about how
|
||||
they have been used."""
|
||||
|
||||
extends("python")
|
||||
homepage = "https://github.com/testing-cabal/mock"
|
||||
url = "https://pypi.python.org/packages/source/m/mock/mock-1.3.0.tar.gz"
|
||||
|
||||
version('1.3.0', '73ee8a4afb3ff4da1b4afa287f39fdeb')
|
||||
|
||||
extends('python')
|
||||
depends_on('py-setuptools@17.1:')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
python('setup.py', 'install', '--prefix=%s' % prefix)
|
||||
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyNumexpr(Package):
|
||||
"""Fast numerical expression evaluator for NumPy"""
|
||||
homepage = "https://github.com/pydata/numexpr"
|
||||
version("2.4", "df7e8d9e9dbb145b56d43c465c2bf854",
|
||||
url="https://pypi.python.org/packages/source/n/numexpr/numexpr-2.4.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -7,9 +7,22 @@ class PyNumpy(Package):
|
||||
|
||||
version('1.9.1', '78842b73560ec378142665e712ae4ad9')
|
||||
version('1.9.2', 'a1ed53432dbcd256398898d35bc8e645')
|
||||
|
||||
|
||||
extends('python')
|
||||
depends_on('py-nose')
|
||||
depends_on('netlib-blas+fpic')
|
||||
depends_on('netlib-lapack+shared')
|
||||
|
||||
def patch(self):
|
||||
filter_file(
|
||||
"possible_executables = \['(gfortran|g77|ifort|efl)",
|
||||
"possible_executables = ['fc",
|
||||
"numpy/distutils/fcompiler/gnu.py",
|
||||
"numpy/distutils/fcompiler/intel.py")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
with open('site.cfg', 'w') as f:
|
||||
f.write('[DEFAULT]\n')
|
||||
f.write('libraries=lapack,blas\n')
|
||||
f.write('library_dirs=%s/lib:%s/lib\n' % (spec['blas'].prefix, spec['lapack'].prefix))
|
||||
python('setup.py', 'install', '--prefix=%s' % prefix)
|
||||
|
||||
@ -6,8 +6,6 @@ class PyPandas(Package):
|
||||
homepage = "http://pandas.pydata.org/"
|
||||
url = "https://pypi.python.org/packages/source/p/pandas/pandas-0.16.0.tar.gz#md5=bfe311f05dc0c351f8955fbd1e296e73"
|
||||
|
||||
version('0.15.1','f6fd8d49fc801f6f3fa48f9117a6290b',
|
||||
url='https://pypi.python.org/packages/source/p/pandas/pandas-0.15.1.tar.gz')
|
||||
version('0.16.0', 'bfe311f05dc0c351f8955fbd1e296e73')
|
||||
version('0.16.1', 'fac4f25748f9610a3e00e765474bdea8')
|
||||
|
||||
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyPep8(Package):
|
||||
"""Python style guide checker"""
|
||||
homepage = "http://pep8.readthedocs.org/"
|
||||
version("1.6.1", "76cf60b245f8549cb458ffcd85710738",
|
||||
url="https://pypi.python.org/packages/source/p/pep8/pep8-1.6.1.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyPickleshare(Package):
|
||||
"""Tiny 'shelve'-like database with concurrency support"""
|
||||
homepage = "https://github.com/vivainio/pickleshare"
|
||||
version("0.5", "25337740507cb855ad58bfcf60f7710e",
|
||||
url="https://pypi.python.org/packages/source/p/pickleshare/pickleshare-0.5.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyPip(Package):
|
||||
"""The PyPA recommended tool for installing Python packages."""
|
||||
homepage = "https://pip.pypa.io/"
|
||||
version("7.1.2", "3823d2343d9f3aaab21cf9c917710196",
|
||||
url="https://pypi.python.org/packages/source/p/pip/pip-7.1.2.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyPy(Package):
|
||||
"""library with cross-python path, ini-parsing, io, code, log facilities"""
|
||||
homepage = "http://pylib.readthedocs.org/"
|
||||
version("1.4.26", "30c3fd92a53f1a5ed6f3591c1fe75c0e",
|
||||
url="https://pypi.python.org/packages/source/p/py/py-1.4.26.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -1,15 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
|
||||
class PyPy4j(Package):
|
||||
"""Enables Python programs to dynamically access arbitrary Java objects"""
|
||||
homepage = "https://www.py4j.org/"
|
||||
url = "https://pypi.python.org/packages/source/p/py4j/py4j-0.9.tar.gz"
|
||||
|
||||
version('0.9', 'b6fed5faef81a5368e3d50a91a5c9a60')
|
||||
|
||||
extends("python")
|
||||
depends_on("py-setuptools@18.1")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python('setup.py', 'install', '--prefix=%s' % prefix)
|
||||
@ -8,9 +8,12 @@ class PyPyside(Package):
|
||||
|
||||
version('1.2.2', 'c45bc400c8a86d6b35f34c29e379e44d')
|
||||
|
||||
# TODO: make build dependency
|
||||
# depends_on("cmake")
|
||||
|
||||
extends('python')
|
||||
depends_on('py-setuptools')
|
||||
depends_on('qt@5.4.0')
|
||||
depends_on('qt@:4')
|
||||
|
||||
def patch(self):
|
||||
"""Undo PySide RPATH handling and add Spack RPATH."""
|
||||
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyPytest(Package):
|
||||
"""pytest: simple powerful testing with Python"""
|
||||
homepage = "http://pytest.org"
|
||||
version("2.6.4", "14341e122f7e9031a0948eb6b01a2640",
|
||||
url="https://pypi.python.org/packages/source/p/pytest/pytest-2.6.4.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyPythonDateutil(Package):
|
||||
"""Extensions to the standard Python datetime module"""
|
||||
homepage = "http://labix.org/python-dateutil"
|
||||
version("2.2", "c1f654d0ff7e33999380a8ba9783fd5c",
|
||||
url="https://pypi.python.org/packages/source/p/python-dateutil/python-dateutil-2.2.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -5,8 +5,6 @@ class PyPytz(Package):
|
||||
homepage = "https://pypi.python.org/pypi/pytz"
|
||||
url = "https://pypi.python.org/packages/source/p/pytz/pytz-2014.10.tar.gz"
|
||||
|
||||
version('2014.9','d42bda2f4c1e873e02fbd1e4acfd1b8c',
|
||||
url='https://pypi.python.org/packages/source/p/pytz/pytz-2014.9.tar.gz')
|
||||
version('2014.10', 'eb1cb941a20c5b751352c52486aa1dd7')
|
||||
version('2015.4', '417a47b1c432d90333e42084a605d3d8')
|
||||
|
||||
|
||||
@ -1,16 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyPyzmq(Package):
|
||||
"""official Python binding for the ZeroMQ Messaging Library"""
|
||||
homepage = "https://github.com/zeromq/pyzmq"
|
||||
url = "https://pypi.python.org/packages/source/p/pyzmq/pyzmq-14.7.0.tar.gz"
|
||||
|
||||
version('14.4.1','a6a7fb6950b1bf5333c6795f3edf196c',
|
||||
url='https://pypi.python.org/packages/source/p/pyzmq/pyzmq-14.4.1.tar.gz')
|
||||
version('14.7.0', '87e3abb33af5794db5ae85c667bbf324')
|
||||
|
||||
extends('python')
|
||||
depends_on('py-setuptools@18.1')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python('setup.py', 'install', '--prefix=%s' % prefix)
|
||||
@ -9,9 +9,6 @@ class PyScikitLearn(Package):
|
||||
version('0.16.1', '363ddda501e3b6b61726aa40b8dbdb7e')
|
||||
|
||||
extends('python')
|
||||
depends_on('python@2.7.10')
|
||||
depends_on('py-numpy@1.9.2')
|
||||
depends_on('py-scipy@0.15.1')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python('setup.py', 'install', '--prefix=%s' % prefix)
|
||||
|
||||
@ -5,14 +5,14 @@ class PyScipy(Package):
|
||||
homepage = "https://pypi.python.org/pypi/scipy"
|
||||
url = "https://pypi.python.org/packages/source/s/scipy/scipy-0.15.0.tar.gz"
|
||||
|
||||
version('0.14.0','d7c7f4ccf8b07b08d6fe49d5cd51f85d',
|
||||
url='https://pypi.python.org/packages/source/s/scipy/scipy-0.14.0.tar.gz')
|
||||
version('0.15.0', '639112f077f0aeb6d80718dc5019dc7a')
|
||||
version('0.15.1', 'be56cd8e60591d6332aac792a5880110')
|
||||
|
||||
extends('python')
|
||||
depends_on('py-nose')
|
||||
depends_on('py-numpy')
|
||||
depends_on('blas')
|
||||
depends_on('lapack')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python('setup.py', 'install', '--prefix=%s' % prefix)
|
||||
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PySeaborn(Package):
|
||||
"""Seaborn: statistical data visualization"""
|
||||
homepage = "http://stanford.edu/~mwaskom/software/seaborn/"
|
||||
version("0.5.1", "2ce6ea7d3c67858c0b1f5793fa2043b8",
|
||||
url="https://pypi.python.org/packages/source/s/seaborn/seaborn-0.5.1.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -3,12 +3,11 @@
|
||||
class PySetuptools(Package):
|
||||
"""Easily download, build, install, upgrade, and uninstall Python packages."""
|
||||
homepage = "https://pypi.python.org/pypi/setuptools"
|
||||
url = "https://pypi.python.org/packages/source/s/setuptools/setuptools-11.3.tar.gz"
|
||||
|
||||
version('18.1', 'f72e87f34fbf07f299f6cb46256a0b06',
|
||||
url='https://pypi.python.org/packages/source/s/setuptools/setuptools-18.1.tar.gz')
|
||||
version('11.3.1', '01f69212e019a2420c1693fb43593930',
|
||||
url="https://pypi.python.org/packages/source/s/setuptools/setuptools-11.3.tar.gz")
|
||||
version('16.0', '0ace0b96233516fc5f7c857d086aa3ad',)
|
||||
version('11.3.1', '01f69212e019a2420c1693fb43593930')
|
||||
version('16.0', '0ace0b96233516fc5f7c857d086aa3ad')
|
||||
version('18.1', 'f72e87f34fbf07f299f6cb46256a0b06')
|
||||
|
||||
extends('python')
|
||||
|
||||
|
||||
@ -5,8 +5,6 @@ class PySix(Package):
|
||||
homepage = "https://pypi.python.org/pypi/six"
|
||||
url = "https://pypi.python.org/packages/source/s/six/six-1.9.0.tar.gz"
|
||||
|
||||
version('1.8.0','1626eb24cc889110c38f7e786ec69885',
|
||||
url='https://pypi.python.org/packages/source/s/six/six-1.8.0.tar.gz')
|
||||
version('1.9.0', '476881ef4012262dfc8adc645ee786c4')
|
||||
|
||||
extends('python')
|
||||
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyStatsmodels(Package):
|
||||
"""Statistical computations and models for use with SciPy"""
|
||||
homepage = "http://statsmodels.sourceforge.net/"
|
||||
version("0.6.1", "f7580ebf7d2a2c9b87abfad190dcb9a3",
|
||||
url="https://pypi.python.org/packages/source/s/statsmodels/statsmodels-0.6.1.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyTables(Package):
|
||||
"""Hierarchical datasets for Python"""
|
||||
homepage = "http://www.pytables.org/"
|
||||
version("3.1.1", "38d917f0c6dfb0bc28ce9ea0c3492524",
|
||||
url="https://pypi.python.org/packages/source/t/tables/tables-3.1.1.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
@ -1,17 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyTornado(Package):
|
||||
"""Python web framework and asynchronous networking library"""
|
||||
homepage = "http://www.tornadoweb.org/"
|
||||
url = "https://pypi.python.org/packages/source/t/tornado/tornado-4.2.1.tar.gz"
|
||||
|
||||
version('4.0.2','985c0e704b765c33a6193d49d1935588',
|
||||
url='https://pypi.python.org/packages/source/t/tornado/tornado-4.0.2.tar.gz')
|
||||
version('4.2.1', 'd523204389cfb70121bb69709f551b20')
|
||||
|
||||
extends('python')
|
||||
depends_on('py-certifi')
|
||||
depends_on('py-setuptools@18.1')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python('setup.py', 'install', '--prefix=%s' % prefix)
|
||||
@ -1,14 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyTraitlets(Package):
|
||||
"""A lightweight Traits like module"""
|
||||
homepage = "http://traitlets.readthedocs.org/"
|
||||
url = "https://github.com/ipython/traitlets/archive/4.0.0.tar.gz"
|
||||
|
||||
version('4.0.0', 'b5b95ea5941fd9619b4704dfd8201568')
|
||||
|
||||
extends('python')
|
||||
depends_on("py-setuptools@18.1")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python('setup.py', 'install', '--prefix=%s' % prefix)
|
||||
@ -1,12 +0,0 @@
|
||||
from spack import *
|
||||
|
||||
class PyTrianglePlot(Package):
|
||||
"""Make some beautiful corner plots of samples."""
|
||||
homepage = "https://github.com/dfm/triangle.py"
|
||||
version("0.0.6", "970a35a9bde6002d673e3188fe39f0ed",
|
||||
url="https://pypi.python.org/packages/source/t/triangle_plot/triangle_plot-0.0.6.tar.gz")
|
||||
|
||||
extends("python")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
python("setup.py", "install", "--prefix=%s" % prefix)
|
||||
18
var/spack/packages/samtools/package.py
Normal file
18
var/spack/packages/samtools/package.py
Normal file
@ -0,0 +1,18 @@
|
||||
from spack import *
|
||||
|
||||
class Samtools(Package):
|
||||
"""SAM Tools provide various utilities for manipulating alignments in the SAM format,
|
||||
including sorting, merging, indexing and generating
|
||||
alignments in a per-position format"""
|
||||
|
||||
homepage = "www.htslib.org"
|
||||
version('1.2','988ec4c3058a6ceda36503eebecd4122',url = "https://github.com/samtools/samtools/releases/download/1.2/samtools-1.2.tar.bz2")
|
||||
|
||||
depends_on("zlib")
|
||||
depends_on("mpc")
|
||||
parallel=False
|
||||
patch("samtools1.2.patch",level=0)
|
||||
|
||||
def install(self, spec, prefix):
|
||||
make("prefix=%s" % prefix, "install")
|
||||
|
||||
20
var/spack/packages/samtools/samtools1.2.patch
Normal file
20
var/spack/packages/samtools/samtools1.2.patch
Normal file
@ -0,0 +1,20 @@
|
||||
--- Makefile 2015-02-03 08:27:34.000000000 -0800
|
||||
+++ Makefile.new 2015-07-21 10:38:27.881406892 -0700
|
||||
@@ -26,7 +26,7 @@
|
||||
CFLAGS = -g -Wall -O2
|
||||
LDFLAGS =
|
||||
LDLIBS =
|
||||
-DFLAGS= -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1
|
||||
+DFLAGS= -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0
|
||||
LOBJS= bam_aux.o bam.o bam_import.o sam.o \
|
||||
sam_header.o bam_plbuf.o
|
||||
AOBJS= bam_index.o bam_plcmd.o sam_view.o \
|
||||
@@ -37,7 +37,7 @@
|
||||
faidx.o stats.o stats_isize.o bam_flags.o bam_split.o \
|
||||
bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o
|
||||
INCLUDES= -I. -I$(HTSDIR)
|
||||
-LIBCURSES= -lcurses # -lXCurses
|
||||
+#LIBCURSES= -lcurses # -lXCurses
|
||||
|
||||
prefix = /usr/local
|
||||
exec_prefix = $(prefix)
|
||||
@ -1,11 +1,10 @@
|
||||
# FIXME: Add copyright statement
|
||||
|
||||
from spack import *
|
||||
from contextlib import closing
|
||||
|
||||
class Scorep(Package):
|
||||
"""The Score-P measurement infrastructure is a highly scalable and
|
||||
easy-to-use tool suite for profiling, event tracing, and online
|
||||
"""The Score-P measurement infrastructure is a highly scalable and
|
||||
easy-to-use tool suite for profiling, event tracing, and online
|
||||
analysis of HPC applications."""
|
||||
|
||||
# FIXME: add a proper url for your package's homepage here.
|
||||
@ -20,7 +19,7 @@ class Scorep(Package):
|
||||
depends_on("mpi")
|
||||
depends_on("papi")
|
||||
# depends_on("otf2@1.2:1.2.1") # only Score-P 1.2.x
|
||||
depends_on("otf2")
|
||||
depends_on("otf2")
|
||||
depends_on("opari2")
|
||||
depends_on("cube@4.2:4.2.3")
|
||||
|
||||
@ -53,12 +52,12 @@ def install(self, spec, prefix):
|
||||
# Use a custom compiler configuration, otherwise the score-p
|
||||
# build system messes with spack's compiler settings.
|
||||
# Create these three files in the build directory
|
||||
with closing(open("platform-backend-user-provided", "w")) as backend_file:
|
||||
with open("platform-backend-user-provided", "w") as backend_file:
|
||||
backend_file.write(self.backend_user_provided)
|
||||
with closing(open("platform-frontend-user-provided", "w")) as frontend_file:
|
||||
with open("platform-frontend-user-provided", "w") as frontend_file:
|
||||
frontend_file.write(self.frontend_user_provided)
|
||||
with closing(open("platform-mpi-user-provided", "w")) as mpi_file:
|
||||
mpi_file.write(self.mpi_user_provided)
|
||||
with open("platform-mpi-user-provided", "w") as mpi_file:
|
||||
mpi_file.write(self.mpi_user_provided)
|
||||
|
||||
configure_args = ["--prefix=%s" % prefix,
|
||||
"--with-custom-compilers",
|
||||
|
||||
15
var/spack/packages/snappy/package.py
Normal file
15
var/spack/packages/snappy/package.py
Normal file
@ -0,0 +1,15 @@
|
||||
import os
|
||||
from spack import *
|
||||
|
||||
class Snappy(Package):
|
||||
"""A fast compressor/decompressor: https://code.google.com/p/snappy"""
|
||||
|
||||
homepage = "https://code.google.com/p/snappy"
|
||||
url = "https://github.com/google/snappy/releases/download/1.1.3/snappy-1.1.3.tar.gz"
|
||||
|
||||
version('1.1.3', '7358c82f133dc77798e4c2062a749b73')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
configure("--prefix=" + prefix)
|
||||
make()
|
||||
make("install")
|
||||
@ -9,17 +9,20 @@ class Stat(Package):
|
||||
version('2.1.0', 'ece26beaf057aa9134d62adcdda1ba91')
|
||||
version('2.0.0', 'c7494210b0ba26b577171b92838e1a9b')
|
||||
|
||||
variant('dysect', default=False, description="enable DySectAPI")
|
||||
|
||||
depends_on('libelf')
|
||||
depends_on('libdwarf')
|
||||
depends_on('dyninst')
|
||||
depends_on('graphlib')
|
||||
depends_on('graphviz')
|
||||
depends_on('launchmon')
|
||||
depends_on('mrnet')
|
||||
|
||||
patch('configure_mpicxx.patch', when='@2.1.0')
|
||||
|
||||
def install(self, spec, prefix):
|
||||
configure(
|
||||
configure_args = [
|
||||
"--enable-gui",
|
||||
"--prefix=%s" % prefix,
|
||||
"--disable-examples", # Examples require MPI: avoid this dependency.
|
||||
@ -27,7 +30,11 @@ def install(self, spec, prefix):
|
||||
"--with-mrnet=%s" % spec['mrnet'].prefix,
|
||||
"--with-graphlib=%s" % spec['graphlib'].prefix,
|
||||
"--with-stackwalker=%s" % spec['dyninst'].prefix,
|
||||
"--with-libdwarf=%s" % spec['libdwarf'].prefix)
|
||||
"--with-libdwarf=%s" % spec['libdwarf'].prefix
|
||||
]
|
||||
if '+dysect' in spec:
|
||||
configure_args.append('--enable-dysectapi')
|
||||
configure(*configure_args)
|
||||
|
||||
make(parallel=False)
|
||||
make("install")
|
||||
|
||||
@ -35,15 +35,26 @@ class Vim(Package):
|
||||
variant('ruby', default=False, description="build with Ruby")
|
||||
depends_on('ruby', when='+ruby')
|
||||
|
||||
variant('cscope', default=False, description="build with cscope support")
|
||||
depends_on('cscope', when='+cscope')
|
||||
|
||||
variant('gui', default=False, description="build with gui (gvim)")
|
||||
# virtual dependency?
|
||||
|
||||
def install(self, spec, prefix):
|
||||
feature_set = None
|
||||
for fs in self.feature_sets:
|
||||
if "+" + fs in spec:
|
||||
if feature_set is not None:
|
||||
tty.error("Only one feature set allowed, both {} and {} specified".format(
|
||||
feature_set,
|
||||
fs))
|
||||
tty.error("Only one feature set allowed, both %s and %s specified"
|
||||
% (feature_set, fs))
|
||||
feature_set = fs
|
||||
if '+gui' in spec:
|
||||
if feature_set is not None:
|
||||
if feature_set is not 'huge':
|
||||
tty.error("+gui variant requires 'huge' feature set, %s was specified"
|
||||
% feature_set)
|
||||
feature_set = 'huge'
|
||||
if feature_set is None:
|
||||
feature_set = 'normal'
|
||||
|
||||
@ -60,6 +71,12 @@ def install(self, spec, prefix):
|
||||
else:
|
||||
configure_args.append("--enable-rubyinterp=dynamic")
|
||||
|
||||
if '+gui' in spec:
|
||||
configure_args.append("--enable-gui=auto")
|
||||
|
||||
if '+cscope' in spec:
|
||||
configure_args.append("--enable-cscope")
|
||||
|
||||
configure("--prefix=%s" % prefix, *configure_args)
|
||||
|
||||
make()
|
||||
|
||||
20
var/spack/packages/zeromq/package.py
Normal file
20
var/spack/packages/zeromq/package.py
Normal file
@ -0,0 +1,20 @@
|
||||
from spack import *
|
||||
|
||||
class Zeromq(Package):
|
||||
""" The ZMQ networking/concurrency library and core API """
|
||||
homepage = "http://zguide.zeromq.org/"
|
||||
url = "http://download.zeromq.org/zeromq-4.1.2.tar.gz"
|
||||
|
||||
version('4.1.2', '159c0c56a895472f02668e692d122685')
|
||||
version('4.1.1', '0a4b44aa085644f25c177f79dc13f253')
|
||||
version('4.0.7', '9b46f7e7b0704b83638ef0d461fd59ab')
|
||||
version('4.0.6', 'd47dd09ed7ae6e7fd6f9a816d7f5fdf6')
|
||||
version('4.0.5', '73c39f5eb01b9d7eaf74a5d899f1d03d')
|
||||
|
||||
depends_on("libsodium")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
configure("--with-libsodium","--prefix=%s" % prefix)
|
||||
|
||||
make()
|
||||
make("install")
|
||||
Loading…
Reference in New Issue
Block a user