Add --configure-args/vars support to RPackage (#4289)

* Add --configure-args/vars support to RPackage

* Docstring formatting change

lib/spack/spack/build_systems/r.py

@@ -30,7 +30,10 @@
 
 
 class RPackage(PackageBase):
-    """Specialized class for packages that are built using R
+    """Specialized class for packages that are built using R.
+
+    For more information on the R build system, see:
+    https://stat.ethz.ch/R-manual/R-devel/library/utils/html/INSTALL.html
 
     This class provides a single phase that can be overridden:
 
@@ -49,12 +52,37 @@ class RPackage(PackageBase):
 
     depends_on('r', type=('build', 'run'))
 
+    def configure_args(self, spec, prefix):
+        """Arguments to pass to install via ``--configure-args``."""
+        return []
+
+    def configure_vars(self, spec, prefix):
+        """Arguments to pass to install via ``--configure-vars``."""
+        return []
+
     def install(self, spec, prefix):
         """Installs an R package."""
-        inspect.getmodule(self).R(
+
-            'CMD', 'INSTALL',
+        config_args = self.configure_args(spec, prefix)
+        config_vars = self.configure_vars(spec, prefix)
+
+        args = [
+            'CMD',
+            'INSTALL'
+        ]
+
+        if config_args:
+            args.append('--configure-args={0}'.format(' '.join(config_args)))
+
+        if config_vars:
+            args.append('--configure-vars={0}'.format(' '.join(config_vars)))
+
+        args.extend([
             '--library={0}'.format(self.module.r_lib_dir),
-            self.stage.source_path)
+            self.stage.source_path
+        ])
+
+        inspect.getmodule(self).R(*args)
 
     # Check that self.prefix is there after installation
     run_after('install')(PackageBase.sanity_check_prefix)

lib/spack/spack/cmd/create.py

@@ -265,7 +265,11 @@ class RPackageTemplate(PackageTemplate):
     # depends_on('r-foo', type=('build', 'run'))"""
 
     body = """\
-    # FIXME: Override install() if necessary."""
+    def configure_args(self, spec, prefix):
+        # FIXME: Add arguments to pass to install via --configure-args
+        # FIXME: If not needed delete this function
+        args = []
+        return args"""
 
     def __init__(self, name, *args):
         # If the user provided `--name r-rcpp`, don't rename it r-r-rcpp

var/spack/repos/builtin/packages/r-rmpi/package.py

@@ -38,18 +38,25 @@ class RRmpi(RPackage):
     depends_on('mpi')
     depends_on('r@2.15.1:')
 
-    def install(self, spec, prefix):
+    # The following MPI types are not supported
-        if 'mpich' in spec:
+    conflicts('^intel-mpi')
-            Rmpi_type = 'MPICH'
+    conflicts('^intel-parallel-studio')
-        elif 'mvapich' in spec:
+    conflicts('^mvapich2')
-            Rmpi_type = 'MVAPICH'
+    conflicts('^spectrum-mpi')
-        else:
+
+    def configure_args(self, spec, prefix):
+        mpi_name = spec['mpi'].name
+
+        # The type of MPI. Supported values are:
+        # OPENMPI, LAM, MPICH, MPICH2, or CRAY
+        if mpi_name == 'openmpi':
             Rmpi_type = 'OPENMPI'
+        elif mpi_name == 'mpich':
+            Rmpi_type = 'MPICH2'
+        else:
+            raise InstallError('Unsupported MPI type')
 
-        my_mpi = spec['mpi']
+        return [
-
+            '--with-Rmpi-type={0}'.format(Rmpi_type),
-        R('CMD', 'INSTALL',
+            '--with-mpi={0}'.format(spec['mpi'].prefix),
-          '--configure-args=--with-Rmpi-type=%s' % Rmpi_type +
+        ]
-          ' --with-mpi=%s' % my_mpi.prefix,
-          '--library={0}'.format(self.module.r_lib_dir),
-          self.stage.source_path)