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dssp: new package at v3.1.4 (#17188)

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Renamed xspp to hspp
This commit is contained in:
Harsh Bhatia 2020-06-29 23:58:13 -07:00 committed by GitHub
parent 01dc8d6fc8
commit 6fb30acb77
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2 changed files with 42 additions and 5 deletions
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32
var/spack/repos/builtin/packages/dssp/package.py Normal file
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@ -0,0 +1,32 @@
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Dssp(AutotoolsPackage):
"""'mkdssp' utility. (dictionary of protein secondary structure)"""
homepage = "https://github.com/cmbi/dssp"
url = "https://github.com/cmbi/dssp/archive/3.1.4.tar.gz"
version('3.1.4', sha256='496282b4b5defc55d111190ab9f1b615a9574a2f090e7cf5444521c747b272d4')
version('2.3.0', sha256='4c95976d86dc64949cb0807fbd58c7bee5393df0001999405863dc90f05846c6')
depends_on('autoconf', type='build')
depends_on('automake', type='build')
depends_on('libtool', type='build')
depends_on('m4', type='build')
depends_on('boost@1.48:')
def configure_args(self):
args = [
"--with-boost=%s" % self.spec['boost'].prefix]
return args
@run_after('configure')
def edit(self):
makefile = FileFilter(join_path(self.stage.source_path, 'Makefile'))
makefile.filter('.*-Werror .*', ' -Wno-error \\')

15
var/spack/repos/builtin/packages/xssp/package.py → var/spack/repos/builtin/packages/hssp/package.py
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@ -6,12 +6,17 @@
from spack import *
class Xssp(AutotoolsPackage):
"""The source code for building the mkdssp, mkhssp, hsspconv, and hsspsoap
programs is bundled in the xssp project"""
class Hssp(AutotoolsPackage):
"""The source code for building the mkhssp and hsspconv programs is bundled
in the hssp project.
homepage = "https://github.com/cmbi/xssp"
url = "https://github.com/cmbi/xssp/archive/3.0.10.tar.gz"
The mkhssp executable creates stockholm files with hssp annotations in
them. The hsspconv executable converts stockholm to the original hssp
format.
"""
homepage = "https://github.com/cmbi/hssp"
url = "https://github.com/cmbi/hssp/archive/3.0.10.tar.gz"
version('3.0.10', sha256='b475d6fa62098df0e54c8dbdaa0b32de93bf5a393335f73f9b5a7e95f3090d2a')
version('3.0.9', sha256='42a9a93c48d22478212dcaf6ceb3feb64443e4cb2e8cccdd402b47a595d16658')