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dssp: new package at v3.1.4 (#17188)

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Renamed xspp to hspp
This commit is contained in:
Harsh Bhatia 2020-06-29 23:58:13 -07:00 committed by GitHub
parent 01dc8d6fc8
commit 6fb30acb77
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2 changed files with 42 additions and 5 deletions
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32
var/spack/repos/builtin/packages/dssp/package.py Normal file
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@ -0,0 +1,32 @@
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Dssp(AutotoolsPackage):
"""'mkdssp' utility. (dictionary of protein secondary structure)"""
homepage = "https://github.com/cmbi/dssp"
url = "https://github.com/cmbi/dssp/archive/3.1.4.tar.gz"
version('3.1.4', sha256='496282b4b5defc55d111190ab9f1b615a9574a2f090e7cf5444521c747b272d4')
version('2.3.0', sha256='4c95976d86dc64949cb0807fbd58c7bee5393df0001999405863dc90f05846c6')
depends_on('autoconf', type='build')
depends_on('automake', type='build')
depends_on('libtool', type='build')
depends_on('m4', type='build')
depends_on('boost@1.48:')
def configure_args(self):
args = [
"--with-boost=%s" % self.spec['boost'].prefix]
return args
@run_after('configure')
def edit(self):
makefile = FileFilter(join_path(self.stage.source_path, 'Makefile'))
makefile.filter('.*-Werror .*', ' -Wno-error \\')

15
var/spack/repos/builtin/packages/xssp/package.py → var/spack/repos/builtin/packages/hssp/package.py
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@ -6,12 +6,17 @@
from spack import * from spack import *
class Xssp(AutotoolsPackage): class Hssp(AutotoolsPackage):
"""The source code for building the mkdssp, mkhssp, hsspconv, and hsspsoap """The source code for building the mkhssp and hsspconv programs is bundled
programs is bundled in the xssp project""" in the hssp project.
homepage = "https://github.com/cmbi/xssp" The mkhssp executable creates stockholm files with hssp annotations in
url = "https://github.com/cmbi/xssp/archive/3.0.10.tar.gz" them. The hsspconv executable converts stockholm to the original hssp
format.
"""
homepage = "https://github.com/cmbi/hssp"
url = "https://github.com/cmbi/hssp/archive/3.0.10.tar.gz"
version('3.0.10', sha256='b475d6fa62098df0e54c8dbdaa0b32de93bf5a393335f73f9b5a7e95f3090d2a') version('3.0.10', sha256='b475d6fa62098df0e54c8dbdaa0b32de93bf5a393335f73f9b5a7e95f3090d2a')
version('3.0.9', sha256='42a9a93c48d22478212dcaf6ceb3feb64443e4cb2e8cccdd402b47a595d16658') version('3.0.9', sha256='42a9a93c48d22478212dcaf6ceb3feb64443e4cb2e8cccdd402b47a595d16658')