reindex: preserve 'explicit' flags
Look up in the old database whether the spec was explicit or not and preserve it into the new database. Fixes #1050.
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		@@ -309,7 +309,11 @@ def reindex(self, directory_layout):
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                for spec in directory_layout.all_specs():
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					                for spec in directory_layout.all_specs():
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                    # Create a spec for each known package and add it.
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					                    # Create a spec for each known package and add it.
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                    path = directory_layout.path_for_spec(spec)
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					                    path = directory_layout.path_for_spec(spec)
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                    self._add(spec, path, directory_layout)
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					                    old_info = old_data.get(spec.dag_hash())
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					                    explicit = False
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					                    if old_info is not None:
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					                        explicit = old_info.explicit
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					                    self._add(spec, path, directory_layout, explicit=explicit)
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                self._check_ref_counts()
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					                self._check_ref_counts()
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