zhangyiss/spack
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

New R Package Pegas@0.14 (#21359)

Browse Source
This commit is contained in:
Desmond Orton 2021-02-01 18:42:44 -06:00 committed by GitHub
parent 6cc23e6137
commit 71b12e9b27
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23
1 changed files with 30 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

30
var/spack/repos/builtin/packages/r-pegas/package.py Normal file
View File

@ -0,0 +1,30 @@
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RPegas(RPackage):
"""Population and Evolutionary Genetics Analysis System
Functions for reading, writing, plotting, analysing, and
manipulating allelic and haplotypic data, including from VCF files,
and for the analysis of population nucleotide sequences and
micro-satellites including coalescent analyses, linkage
disequilibrium, population structure (Fst, Amova) and equilibrium
(HWE), haplotype networks, minimum spanning tree and network, and
median-joining networks."""
homepage = "http://ape-package.ird.fr/pegas.html"
url = "https://cloud.r-project.org/src/contrib/pegas_0.14.tar.gz"
list_url = "https://cloud.r-project.org/src/contrib/Archive/pegas"
maintainers = ['dorton21']
version('0.14', sha256='7df90e6c4a69e8dbed2b3f68b18f1975182475bf6f86d4159256b52fd5332053')
depends_on('r@3.2.0:', type=('build', 'run'))
depends_on('r-ape@5.3-11:', type=('build', 'run'))
depends_on('r-adegenet', type=('build', 'run'))