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muscle: add 3.8.31 (#15974)

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* muscle: add 3.8.31

* muscle: use build_directory property

* muscle: add url_for_version, fix version comparison
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Justin S 2020-04-14 11:13:16 -05:00 committed by GitHub
parent 5acea35e82
commit 71fb29fccf
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1 changed files with 24 additions and 3 deletions
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27
var/spack/repos/builtin/packages/muscle/package.py
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@ -12,15 +12,36 @@ class Muscle(MakefilePackage):
that are consistently better than CLUSTALW."""
homepage = "http://drive5.com/muscle/"
url = "http://www.drive5.com/muscle/muscle_src_3.8.1551.tar.gz"
version('3.8.31', sha256='43c5966a82133bd7da5921e8142f2f592c2b5f53d802f0527a2801783af809ad')
version('3.8.1551', sha256='c70c552231cd3289f1bad51c9bd174804c18bb3adcf47f501afec7a68f9c482e')
@property
def build_directory(self):
if self.spec.satisfies('@3.8.31'):
return 'src'
else:
return '.'
def url_for_version(self, version):
fmt_new = 'https://drive5.com/muscle/downloads{0}/muscle{0}_src.tar.gz'
fmt_old = 'https://drive5.com/muscle/muscle_src_{0}.tar.gz'
if version == Version('3.8.31'):
return fmt_new.format(version.dotted)
else:
return fmt_old.format(version.dotted)
def edit(self, spec, prefix):
makefile = FileFilter('Makefile')
mkfile_name = 'Makefile'
if self.spec.satisfies('@3.8.31'):
mkfile_name = 'mk'
makefile = FileFilter(join_path(self.build_directory, mkfile_name))
makefile.filter('-static', '')
makefile.filter('-funroll-loops', '')
def install(self, spec, prefix):
mkdirp(prefix.bin)
install('muscle', prefix.bin)
install(join_path(self.build_directory, 'muscle'), prefix.bin)