Tweak how R packages are built.
Add bzip2 as a dependency to base R. Switch from installing the R packages from tar files to installing from the extracted directory. This is more in line with a standard install and also allows installing from VCS. Use the Bioconductor version for BiocGenerics and future Bioconductor packages. Suffix the package with 'bioc-$version' to indicate which Bioconductor release the package is a part of. This is actually more important than the actual version attached to individual packages although those are subject to change within the Bioconductor branch.
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@@ -34,11 +34,11 @@ class RAbind(Package):
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homepage = "https://cran.r-project.org/"
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url = "https://cran.r-project.org/src/contrib/abind_1.4-3.tar.gz"
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version('1.4-3', '10fcf80c677b991bf263d38be35a1fc5', expand=False)
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version('1.4-3', '10fcf80c677b991bf263d38be35a1fc5')
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extends('R')
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def install(self, spec, prefix):
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R('CMD', 'INSTALL', '--library=%s' %
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self.module.r_lib_dir, '%s' % self.stage.archive_file)
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self.module.r_lib_dir, '%s' % self.stage.source_path)
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