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busco: add 4.1.3 (#19296)

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Justin S 2020-10-13 23:05:43 -05:00 committed by GitHub
parent beeab6e1b9
commit 721efc62d1
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1 changed files with 9 additions and 0 deletions
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9
var/spack/repos/builtin/packages/busco/package.py
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@ -14,6 +14,8 @@ class Busco(PythonPackage):
url = "https://gitlab.com/api/v4/projects/ezlab%2Fbusco/repository/archive.tar.gz?sha=2.0.1" url = "https://gitlab.com/api/v4/projects/ezlab%2Fbusco/repository/archive.tar.gz?sha=2.0.1"
git = "https://gitlab.com/ezlab/busco.git" git = "https://gitlab.com/ezlab/busco.git"
version('4.1.3', sha256='08ded26aeb4f6aef791cd88524c3c00792a054c7672ea05219f468d495e7b072')
# TODO: check the installation procedure for version 3.0.2 # TODO: check the installation procedure for version 3.0.2
# and uncomment the following line # and uncomment the following line
# version('3.0.2', sha256='dbea093315b766b0f7c4fe3cafbbdf51ade79ec84bde04f1f437b48333200f34') # version('3.0.2', sha256='dbea093315b766b0f7c4fe3cafbbdf51ade79ec84bde04f1f437b48333200f34')
@ -27,11 +29,18 @@ class Busco(PythonPackage):
depends_on('hmmer') depends_on('hmmer')
depends_on('augustus') depends_on('augustus')
depends_on('py-biopython', when='@4.1.3', type=('build', 'run'))
def build(self, spec, prefix): def build(self, spec, prefix):
if self.spec.satisfies('@2.0.1'): if self.spec.satisfies('@2.0.1'):
pass pass
def install(self, spec, prefix): def install(self, spec, prefix):
if self.spec.satisfies('@4.1.3'):
install_tree('bin', prefix.bin)
install_tree('config', prefix.config)
args = self.install_args(spec, prefix)
self.setup_py('install', *args)
if self.spec.satisfies('@3.0.1'): if self.spec.satisfies('@3.0.1'):
with working_dir('scripts'): with working_dir('scripts'):
mkdirp(prefix.bin) mkdirp(prefix.bin)