tassel: new package (#5583)

var/spack/repos/builtin/packages/tassel/package.py

@@ -0,0 +1,45 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Tassel(Package):
+    """TASSEL is a software package to evaluate traits associations,
+       evolutionary patterns, and linkage disequilibrium."""
+
+    homepage = "http://www.maizegenetics.net/tassel"
+    url      = "https://bitbucket.org/tasseladmin/tassel-5-source/get/master.tar.gz"
+
+    version('2017-07-22', git='https://bitbucket.org/tasseladmin/tassel-5-standalone.git',
+            commit='ae96ae75c3c9a9e8026140b6c775fa4685bdf531')
+
+    depends_on('java', type=('build', 'run'))
+    depends_on('perl', type=('build', 'run'))
+
+    def install(self, spec, prefix):
+        install_tree('.', prefix.bin)
+
+    def setup_environment(self, spack_env, run_env):
+        run_env.prepend_path('CLASSPATH', prefix.bin.lib)