py-tesorter: add post install hmmpress step (#44940)
Signed-off-by: Shane Nehring <snehring@iastate.edu>
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@ -3,6 +3,8 @@
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from glob import glob
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from spack.package import *
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@ -29,5 +31,20 @@ class PyTesorter(PythonPackage):
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depends_on("py-biopython", type=("build", "run"))
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depends_on("py-xopen", type=("build", "run"))
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depends_on("hmmer@3.3:", type="run")
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depends_on("hmmer@3.3:", type=("build", "run"))
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depends_on("blast-plus", type="run")
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@run_after("install")
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def run_hmmpress(self):
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hmmpress = Executable(self.spec["hmmer"].prefix.bin.hmmpress)
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db_dir = join_path(
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self.prefix,
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"lib",
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f"python{self.spec['python'].version.dotted[:2]}",
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"site-packages",
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"TEsorter",
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"database",
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)
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with working_dir(db_dir):
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for f in glob("*.hmm"):
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hmmpress(f)
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