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py-tesorter: add post install hmmpress step (#44940)

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Signed-off-by: Shane Nehring <snehring@iastate.edu>
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snehring 2024-07-01 09:51:26 -05:00 committed by GitHub
parent aa58d3c170
commit 76ca264b72
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1 changed files with 18 additions and 1 deletions
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19
var/spack/repos/builtin/packages/py-tesorter/package.py
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@ -3,6 +3,8 @@
# #
# SPDX-License-Identifier: (Apache-2.0 OR MIT) # SPDX-License-Identifier: (Apache-2.0 OR MIT)
from glob import glob
from spack.package import * from spack.package import *
@ -29,5 +31,20 @@ class PyTesorter(PythonPackage):
depends_on("py-biopython", type=("build", "run")) depends_on("py-biopython", type=("build", "run"))
depends_on("py-xopen", type=("build", "run")) depends_on("py-xopen", type=("build", "run"))
depends_on("hmmer@3.3:", type="run") depends_on("hmmer@3.3:", type=("build", "run"))
depends_on("blast-plus", type="run") depends_on("blast-plus", type="run")
@run_after("install")
def run_hmmpress(self):
hmmpress = Executable(self.spec["hmmer"].prefix.bin.hmmpress)
db_dir = join_path(
self.prefix,
"lib",
f"python{self.spec['python'].version.dotted[:2]}",
"site-packages",
"TEsorter",
"database",
)
with working_dir(db_dir):
for f in glob("*.hmm"):
hmmpress(f)