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parsimonator: simplified recipe by removing SIMD variants (#12949)

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Now the support for SSE3 or AVX is tested on the selected target
This commit is contained in:
Massimiliano Culpo
2019-09-26 09:33:18 +02:00
committed by GitHub
parent f2967b6c16
commit 78d051b534
1 changed files with 11 additions and 49 deletions
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60
var/spack/repos/builtin/packages/parsimonator/package.py
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@@ -3,66 +3,30 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
from spack.spec import ConflictsInSpecError
class Parsimonator(MakefilePackage):
"""Parsimonator is a no-frills light-weight implementation for building
starting trees under parsimony for RAxML"""
starting trees under parsimony for RAxML.
"""
homepage = "http://www.exelixis-lab.org/"
git = "https://github.com/stamatak/Parsimonator-1.0.2.git"
version('1.0.2', commit='78368c6ab1e9adc7e9c6ec9256dd7ff2a5bb1b0a')
variant('sse', default=False, description='Enable SSE in order to substantially speed up execution')
variant('avx', default=False, description='Enable AVX in order to substantially speed up execution')
conflicts('+avx', when='+sse')
patch('nox86.patch')
def flag_handler(self, name, flags):
arch = ''
spec = self.spec
if spec.satisfies("platform=cray"):
# FIXME; It is assumed that cray is x86_64.
# If you support arm on cray, you need to fix it.
arch = 'x86_64'
if arch != 'x86_64' and spec.target.family != 'x86_64':
if spec.satisfies("+sse"):
raise ConflictsInSpecError(
spec,
[(
spec,
spec.architecture.target,
spec.variants['sse'],
'+sse is valid only on x86_64'
)]
)
if spec.satisfies("+avx"):
raise ConflictsInSpecError(
spec,
[(
spec,
spec.architecture.target,
spec.variants['avx'],
'+avx is valid only on x86_64'
)]
)
return (flags, None, None)
@property
def makefile_file(self):
if self.spec.target.family != 'x86_64':
return 'Makefile.nosse'
elif '+sse' in self.spec:
return 'Makefile.SSE3.gcc'
elif '+avx' in self.spec:
if 'avx' in self.spec.target:
return 'Makefile.AVX.gcc'
else:
return 'Makefile.gcc'
elif 'sse3' in self.spec.target:
return 'Makefile.SSE3.gcc'
return 'Makefile.gcc'
def edit(self, spec, prefix):
makefile = FileFilter(self.makefile_file)
@@ -73,11 +37,9 @@ def build(self, spec, prefix):
def install(self, spec, prefix):
mkdirp(prefix.bin)
if self.spec.target.family != 'x86_64':
install('parsimonator', prefix.bin)
elif '+sse' in spec:
install('parsimonator-SSE3', prefix.bin)
elif '+avx' in spec:
if 'avx' in self.spec.target:
install('parsimonator-AVX', prefix.bin)
elif 'sse3' in self.spec.target:
install('parsimonator-SSE3', prefix.bin)
else:
install('parsimonator', prefix.bin)