module file tutorial: rebuilt docker image and updated the script
This commit is contained in:
Massimiliano Culpo
Todd Gamblin
parent
576f0c98d2
commit
7cbe1aedb7
@ -177,15 +177,16 @@ pre-installed in the image:
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root@module-file-tutorial:/# which spack
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/usr/local/bin/spack
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root@module-file-tutorial:/# spack find
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==> 46 installed packages.
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==> 43 installed packages.
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-- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
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autoconf@2.69 gcc@7.2.0 git@2.9.4 isl@0.18 libtool@2.4.6 lua@5.3.4 lua-luaposix@33.4.0 mpc@1.0.3 ncurses@6.0 pkg-config@0.29.2 tcl@8.6.6
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automake@1.15.1 gdbm@1.13 gmp@6.1.2 libsigsegv@2.11 lmod@7.7 lua-luafilesystem@1_6_3 m4@1.4.18 mpfr@3.1.5 perl@5.24.1 readline@7.0 zlib@1.2.11
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autoconf@2.69 gdbm@1.14.1 isl@0.19 lmod@7.7.29 lua-luaposix@33.4.0 mpfr@4.0.1 pkgconf@1.4.2 zlib@1.2.11
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automake@1.16.1 git@2.9.4 libsigsegv@2.11 lua@5.3.4 m4@1.4.18 ncurses@6.1 readline@7.0
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gcc@7.2.0 gmp@6.1.2 libtool@2.4.6 lua-luafilesystem@1_6_3 mpc@1.1.0 perl@5.26.2 tcl@8.6.8
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-- linux-ubuntu16.04-x86_64 / gcc@7.2.0 -------------------------
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bzip2@1.0.6 ncurses@6.0 netlib-scalapack@2.0.2 openblas@0.2.20 pkg-config@0.29.2 py-packaging@16.8 py-setuptools@35.0.2 readline@7.0
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cmake@3.9.4 netlib-lapack@3.6.1 netlib-scalapack@2.0.2 openmpi@1.10.2 py-appdirs@1.4.3 py-pyparsing@2.2.0 py-six@1.10.0 sqlite@3.20.0
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mpich@3.2 netlib-scalapack@2.0.2 netlib-scalapack@2.0.2 openssl@1.0.2k py-numpy@1.13.1 py-scipy@0.19.1 python@2.7.14 zlib@1.2.11
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bzip2@1.0.6 mpich@3.2.1 netlib-scalapack@2.0.2 netlib-scalapack@2.0.2 openssl@1.0.2o py-scipy@1.1.0 readline@7.0
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cmake@3.11.4 ncurses@6.1 netlib-scalapack@2.0.2 openblas@0.3.0 pkgconf@1.4.2 py-setuptools@39.2.0 sqlite@3.23.1
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gdbm@1.14.1 netlib-lapack@3.8.0 netlib-scalapack@2.0.2 openmpi@1.10.2 py-numpy@1.14.3 python@2.7.15 zlib@1.2.11
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Go to :ref:`module_file_tutorial_non_hierarchical` to proceed with the tutorial.
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@ -359,17 +360,22 @@ If you arrived to this point you should have an environment that looks similar t
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root@module-file-tutorial:/# module avail
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----------------------------------------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 -----------------------------------------------------------------------------
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autoconf-2.69-gcc-5.4.0-bvabhji libtool-2.4.6-gcc-5.4.0-o2pfwjf ncurses-6.0-gcc-7.2.0-oh6pqty pkg-config-0.29.2-gcc-5.4.0-ae2hwm7 readline-7.0-gcc-5.4.0-gizxpch
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automake-1.15.1-gcc-5.4.0-kaiefe4 lmod-7.7-gcc-5.4.0-okcwjgw netlib-lapack-3.6.1-gcc-7.2.0-5sywztc pkg-config-0.29.2-gcc-7.2.0-76z7ehw readline-7.0-gcc-7.2.0-eqos6rz
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bzip2-1.0.6-gcc-7.2.0-mwamumj lua-5.3.4-gcc-5.4.0-ytxw2gq netlib-scalapack-2.0.2-gcc-7.2.0-5lb2j5p py-appdirs-1.4.3-gcc-7.2.0-7ncu7zr sqlite-3.20.0-gcc-7.2.0-hfmjilk
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cmake-3.9.4-gcc-7.2.0-6bxdr6h lua-luafilesystem-1_6_3-gcc-5.4.0-5dzzlt4 netlib-scalapack-2.0.2-gcc-7.2.0-ax6aza6 py-numpy-1.13.1-gcc-7.2.0-22n5oub tcl-8.6.6-gcc-5.4.0-767ls4i
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gcc-7.2.0-gcc-5.4.0-go3z4hb lua-luaposix-33.4.0-gcc-5.4.0-w5jpnwm netlib-scalapack-2.0.2-gcc-7.2.0-c4v5l7j py-packaging-16.8-gcc-7.2.0-c37cjmq zlib-1.2.11-gcc-5.4.0-swly52a
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gdbm-1.13-gcc-5.4.0-vdhoris m4-1.4.18-gcc-5.4.0-r5envx3 netlib-scalapack-2.0.2-gcc-7.2.0-m7rzcmh py-pyparsing-2.2.0-gcc-7.2.0-ahdh5cx zlib-1.2.11-gcc-7.2.0-lv5fabl
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git-2.9.4-gcc-5.4.0-atwjs4i mpc-1.0.3-gcc-5.4.0-tumbpsh openblas-0.2.20-gcc-7.2.0-kvddide py-scipy-0.19.1-gcc-7.2.0-7hi7r5j
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gmp-6.1.2-gcc-5.4.0-qc4qcfz mpfr-3.1.5-gcc-5.4.0-mdi6irz openmpi-1.10.2-gcc-7.2.0-ufw7pdi py-setuptools-35.0.2-gcc-7.2.0-cvasi7i
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isl-0.18-gcc-5.4.0-vttqout mpich-3.2-gcc-7.2.0-7gxffhv openssl-1.0.2k-gcc-7.2.0-pxv3dh4 py-six-1.10.0-gcc-7.2.0-3xk5mod
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libsigsegv-2.11-gcc-5.4.0-fypapcp ncurses-6.0-gcc-5.4.0-ukq4tcc perl-5.24.1-gcc-5.4.0-mfzwy6y python-2.7.14-gcc-7.2.0-555u7ea
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-------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 ---------------------------------------------
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autoconf-2.69-gcc-5.4.0-cbvv5rj lua-luaposix-33.4.0-gcc-5.4.0-i7w7ynf perl-5.26.2-gcc-5.4.0-n2k4mza
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automake-1.16.1-gcc-5.4.0-lykrrr4 m4-1.4.18-gcc-5.4.0-3z33ecf pkgconf-1.4.2-gcc-5.4.0-fovrh7a
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bzip2-1.0.6-gcc-7.2.0-mwamumj mpc-1.1.0-gcc-5.4.0-56lbd3h pkgconf-1.4.2-gcc-7.2.0-yoxwmgb
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cmake-3.11.4-gcc-7.2.0-h24ofjs mpfr-4.0.1-gcc-5.4.0-dy5r7hi py-numpy-1.14.3-gcc-7.2.0-t3loxvu
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gcc-7.2.0-gcc-5.4.0-wwhgyej mpich-3.2.1-gcc-7.2.0-vt5xcat py-scipy-1.1.0-gcc-7.2.0-fdiryak
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gdbm-1.14.1-gcc-5.4.0-q4fpyuo ncurses-6.1-gcc-5.4.0-3o765ou py-setuptools-39.2.0-gcc-7.2.0-jqhycal
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gdbm-1.14.1-gcc-7.2.0-zk5lhob ncurses-6.1-gcc-7.2.0-xcgzqdv python-2.7.15-gcc-7.2.0-c7pnzul
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git-2.9.4-gcc-5.4.0-mkaoyhz netlib-lapack-3.8.0-gcc-7.2.0-bcikpen readline-7.0-gcc-5.4.0-nxhwrg7
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gmp-6.1.2-gcc-5.4.0-qc4qcfz netlib-scalapack-2.0.2-gcc-7.2.0-d3lertf readline-7.0-gcc-7.2.0-ccruj2i
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isl-0.19-gcc-5.4.0-hsl7f52 netlib-scalapack-2.0.2-gcc-7.2.0-jae3ilo sqlite-3.23.1-gcc-7.2.0-5ltus3a
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libsigsegv-2.11-gcc-5.4.0-fypapcp netlib-scalapack-2.0.2-gcc-7.2.0-lqfhvfh tcl-8.6.8-gcc-5.4.0-qhwyccy
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libtool-2.4.6-gcc-5.4.0-o2pfwjf netlib-scalapack-2.0.2-gcc-7.2.0-uhzmwog zlib-1.2.11-gcc-5.4.0-5nus6kn
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lmod-7.7.29-gcc-5.4.0-wl6mywv openblas-0.3.0-gcc-7.2.0-pdatzbi zlib-1.2.11-gcc-7.2.0-ezuwp4p
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lua-5.3.4-gcc-5.4.0-izvaota openmpi-1.10.2-gcc-7.2.0-2h6xmxh
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lua-luafilesystem-1_6_3-gcc-5.4.0-ywlmaou openssl-1.0.2o-gcc-7.2.0-cvldq3v
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Use "module spider" to find all possible modules.
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Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys".
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@ -380,19 +386,24 @@ Taking a look at the ``gcc`` module you'll see, for example:
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.. code-block:: console
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root@module-file-tutorial:/# module show gcc-7.2.0-gcc-5.4.0-go3z4hb
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---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
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/usr/local/share/spack/modules/linux-ubuntu16.04-x86_64/gcc-7.2.0-gcc-5.4.0-go3z4hb:
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---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
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root@module-file-tutorial:/# module show gcc-7.2.0-gcc-5.4.0-wwhgyej
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----------------------------------------------------------------------------------------------------------------------------------------------
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/usr/local/share/spack/modules/linux-ubuntu16.04-x86_64/gcc-7.2.0-gcc-5.4.0-wwhgyej:
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----------------------------------------------------------------------------------------------------------------------------------------------
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whatis("The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Ada, and Go, as well as libraries for these languages. ")
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prepend_path("PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/bin")
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prepend_path("MANPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/share/man")
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prepend_path("LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib")
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prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib")
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prepend_path("LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib64")
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prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib64")
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prepend_path("CPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/include")
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prepend_path("CMAKE_PREFIX_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/")
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prepend_path("PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin")
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prepend_path("MANPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/share/man")
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prepend_path("LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib")
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prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib")
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prepend_path("LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib64")
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prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib64")
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prepend_path("CPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/include")
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prepend_path("CMAKE_PREFIX_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/")
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setenv("CC","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gcc")
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setenv("CXX","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/g++")
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setenv("FC","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
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setenv("F77","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
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setenv("F90","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
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help([[The GNU Compiler Collection includes front ends for C, C++, Objective-C,
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Fortran, Ada, and Go, as well as libraries for these languages.
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]])
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@ -426,15 +437,18 @@ Next you should regenerate all the module files:
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==> You are about to regenerate tcl module files for:
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-- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
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bvabhji autoconf@2.69 vdhoris gdbm@1.13 vttqout isl@0.18 okcwjgw lmod@7.7 w5jpnwm lua-luaposix@33.4.0 mdi6irz mpfr@3.1.5 ae2hwm7 pkg-config@0.29.2 swly52a zlib@1.2.11
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kaiefe4 automake@1.15.1 atwjs4i git@2.9.4 fypapcp libsigsegv@2.11 ytxw2gq lua@5.3.4 r5envx3 m4@1.4.18 ukq4tcc ncurses@6.0 gizxpch readline@7.0
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go3z4hb gcc@7.2.0 qc4qcfz gmp@6.1.2 o2pfwjf libtool@2.4.6 5dzzlt4 lua-luafilesystem@1_6_3 tumbpsh mpc@1.0.3 mfzwy6y perl@5.24.1 767ls4i tcl@8.6.6
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cbvv5rj autoconf@2.69 qc4qcfz gmp@6.1.2 izvaota lua@5.3.4 dy5r7hi mpfr@4.0.1 qhwyccy tcl@8.6.8
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lykrrr4 automake@1.16.1 hsl7f52 isl@0.19 ywlmaou lua-luafilesystem@1_6_3 3o765ou ncurses@6.1 5nus6kn zlib@1.2.11
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wwhgyej gcc@7.2.0 fypapcp libsigsegv@2.11 i7w7ynf lua-luaposix@33.4.0 n2k4mza perl@5.26.2
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q4fpyuo gdbm@1.14.1 o2pfwjf libtool@2.4.6 3z33ecf m4@1.4.18 fovrh7a pkgconf@1.4.2
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mkaoyhz git@2.9.4 wl6mywv lmod@7.7.29 56lbd3h mpc@1.1.0 nxhwrg7 readline@7.0
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-- linux-ubuntu16.04-x86_64 / gcc@7.2.0 -------------------------
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mwamumj bzip2@1.0.6 5sywztc netlib-lapack@3.6.1 m7rzcmh netlib-scalapack@2.0.2 76z7ehw pkg-config@0.29.2 ahdh5cx py-pyparsing@2.2.0 555u7ea python@2.7.14
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6bxdr6h cmake@3.9.4 ax6aza6 netlib-scalapack@2.0.2 kvddide openblas@0.2.20 7ncu7zr py-appdirs@1.4.3 7hi7r5j py-scipy@0.19.1 eqos6rz readline@7.0
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7gxffhv mpich@3.2 c4v5l7j netlib-scalapack@2.0.2 ufw7pdi openmpi@1.10.2 22n5oub py-numpy@1.13.1 cvasi7i py-setuptools@35.0.2 hfmjilk sqlite@3.20.0
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oh6pqty ncurses@6.0 5lb2j5p netlib-scalapack@2.0.2 pxv3dh4 openssl@1.0.2k c37cjmq py-packaging@16.8 3xk5mod py-six@1.10.0 lv5fabl zlib@1.2.11
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mwamumj bzip2@1.0.6 bcikpen netlib-lapack@3.8.0 pdatzbi openblas@0.3.0 fdiryak py-scipy@1.1.0 ezuwp4p zlib@1.2.11
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h24ofjs cmake@3.11.4 d3lertf netlib-scalapack@2.0.2 2h6xmxh openmpi@1.10.2 jqhycal py-setuptools@39.2.0
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zk5lhob gdbm@1.14.1 uhzmwog netlib-scalapack@2.0.2 cvldq3v openssl@1.0.2o c7pnzul python@2.7.15
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vt5xcat mpich@3.2.1 lqfhvfh netlib-scalapack@2.0.2 yoxwmgb pkgconf@1.4.2 ccruj2i readline@7.0
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xcgzqdv ncurses@6.1 jae3ilo netlib-scalapack@2.0.2 t3loxvu py-numpy@1.14.3 5ltus3a sqlite@3.23.1
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==> Do you want to proceed? [y/n] y
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==> Regenerating tcl module files
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@ -444,16 +458,21 @@ paths have disappeared:
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.. code-block:: console
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root@module-file-tutorial:/# module show gcc-7.2.0-gcc-5.4.0-go3z4hb
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---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
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/usr/local/share/spack/modules/linux-ubuntu16.04-x86_64/gcc-7.2.0-gcc-5.4.0-go3z4hb:
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---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
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root@module-file-tutorial:/# module show gcc-7.2.0-gcc-5.4.0-wwhgyej
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----------------------------------------------------------------------------------------------------------------------------------------------
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/usr/local/share/spack/modules/linux-ubuntu16.04-x86_64/gcc-7.2.0-gcc-5.4.0-wwhgyej:
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----------------------------------------------------------------------------------------------------------------------------------------------
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whatis("The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Ada, and Go, as well as libraries for these languages. ")
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prepend_path("PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/bin")
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prepend_path("MANPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/share/man")
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prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib")
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prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib64")
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prepend_path("CMAKE_PREFIX_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/")
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prepend_path("PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin")
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prepend_path("MANPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/share/man")
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prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib")
|
||||
prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib64")
|
||||
prepend_path("CMAKE_PREFIX_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/")
|
||||
setenv("CC","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gcc")
|
||||
setenv("CXX","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/g++")
|
||||
setenv("FC","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
|
||||
setenv("F77","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
|
||||
setenv("F90","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
|
||||
help([[The GNU Compiler Collection includes front ends for C, C++, Objective-C,
|
||||
Fortran, Ada, and Go, as well as libraries for these languages.
|
||||
]])
|
||||
@ -488,27 +507,32 @@ and regenerate the module files:
|
||||
==> You are about to regenerate tcl module files for:
|
||||
|
||||
-- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
|
||||
bvabhji autoconf@2.69 vdhoris gdbm@1.13 vttqout isl@0.18 okcwjgw lmod@7.7 w5jpnwm lua-luaposix@33.4.0 mdi6irz mpfr@3.1.5 ae2hwm7 pkg-config@0.29.2 swly52a zlib@1.2.11
|
||||
kaiefe4 automake@1.15.1 atwjs4i git@2.9.4 fypapcp libsigsegv@2.11 ytxw2gq lua@5.3.4 r5envx3 m4@1.4.18 ukq4tcc ncurses@6.0 gizxpch readline@7.0
|
||||
go3z4hb gcc@7.2.0 qc4qcfz gmp@6.1.2 o2pfwjf libtool@2.4.6 5dzzlt4 lua-luafilesystem@1_6_3 tumbpsh mpc@1.0.3 mfzwy6y perl@5.24.1 767ls4i tcl@8.6.6
|
||||
cbvv5rj autoconf@2.69 qc4qcfz gmp@6.1.2 izvaota lua@5.3.4 dy5r7hi mpfr@4.0.1 qhwyccy tcl@8.6.8
|
||||
lykrrr4 automake@1.16.1 hsl7f52 isl@0.19 ywlmaou lua-luafilesystem@1_6_3 3o765ou ncurses@6.1 5nus6kn zlib@1.2.11
|
||||
wwhgyej gcc@7.2.0 fypapcp libsigsegv@2.11 i7w7ynf lua-luaposix@33.4.0 n2k4mza perl@5.26.2
|
||||
q4fpyuo gdbm@1.14.1 o2pfwjf libtool@2.4.6 3z33ecf m4@1.4.18 fovrh7a pkgconf@1.4.2
|
||||
mkaoyhz git@2.9.4 wl6mywv lmod@7.7.29 56lbd3h mpc@1.1.0 nxhwrg7 readline@7.0
|
||||
|
||||
-- linux-ubuntu16.04-x86_64 / gcc@7.2.0 -------------------------
|
||||
mwamumj bzip2@1.0.6 5sywztc netlib-lapack@3.6.1 m7rzcmh netlib-scalapack@2.0.2 76z7ehw pkg-config@0.29.2 ahdh5cx py-pyparsing@2.2.0 555u7ea python@2.7.14
|
||||
6bxdr6h cmake@3.9.4 ax6aza6 netlib-scalapack@2.0.2 kvddide openblas@0.2.20 7ncu7zr py-appdirs@1.4.3 7hi7r5j py-scipy@0.19.1 eqos6rz readline@7.0
|
||||
7gxffhv mpich@3.2 c4v5l7j netlib-scalapack@2.0.2 ufw7pdi openmpi@1.10.2 22n5oub py-numpy@1.13.1 cvasi7i py-setuptools@35.0.2 hfmjilk sqlite@3.20.0
|
||||
oh6pqty ncurses@6.0 5lb2j5p netlib-scalapack@2.0.2 pxv3dh4 openssl@1.0.2k c37cjmq py-packaging@16.8 3xk5mod py-six@1.10.0 lv5fabl zlib@1.2.11
|
||||
mwamumj bzip2@1.0.6 bcikpen netlib-lapack@3.8.0 pdatzbi openblas@0.3.0 fdiryak py-scipy@1.1.0 ezuwp4p zlib@1.2.11
|
||||
h24ofjs cmake@3.11.4 d3lertf netlib-scalapack@2.0.2 2h6xmxh openmpi@1.10.2 jqhycal py-setuptools@39.2.0
|
||||
zk5lhob gdbm@1.14.1 uhzmwog netlib-scalapack@2.0.2 cvldq3v openssl@1.0.2o c7pnzul python@2.7.15
|
||||
vt5xcat mpich@3.2.1 lqfhvfh netlib-scalapack@2.0.2 yoxwmgb pkgconf@1.4.2 ccruj2i readline@7.0
|
||||
xcgzqdv ncurses@6.1 jae3ilo netlib-scalapack@2.0.2 t3loxvu py-numpy@1.14.3 5ltus3a sqlite@3.23.1
|
||||
|
||||
==> Do you want to proceed? [y/n] y
|
||||
==> Regenerating tcl module files
|
||||
|
||||
root@module-file-tutorial:/# module avail
|
||||
|
||||
----------------------------------------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 -----------------------------------------------------------------------------
|
||||
bzip2-1.0.6-gcc-7.2.0-mwamumj netlib-scalapack-2.0.2-gcc-7.2.0-5lb2j5p openmpi-1.10.2-gcc-7.2.0-ufw7pdi py-packaging-16.8-gcc-7.2.0-c37cjmq python-2.7.14-gcc-7.2.0-555u7ea
|
||||
cmake-3.9.4-gcc-7.2.0-6bxdr6h netlib-scalapack-2.0.2-gcc-7.2.0-ax6aza6 openssl-1.0.2k-gcc-7.2.0-pxv3dh4 py-pyparsing-2.2.0-gcc-7.2.0-ahdh5cx readline-7.0-gcc-7.2.0-eqos6rz
|
||||
mpich-3.2-gcc-7.2.0-7gxffhv netlib-scalapack-2.0.2-gcc-7.2.0-c4v5l7j pkg-config-0.29.2-gcc-7.2.0-76z7ehw py-scipy-0.19.1-gcc-7.2.0-7hi7r5j sqlite-3.20.0-gcc-7.2.0-hfmjilk
|
||||
ncurses-6.0-gcc-7.2.0-oh6pqty netlib-scalapack-2.0.2-gcc-7.2.0-m7rzcmh py-appdirs-1.4.3-gcc-7.2.0-7ncu7zr py-setuptools-35.0.2-gcc-7.2.0-cvasi7i zlib-1.2.11-gcc-7.2.0-lv5fabl
|
||||
netlib-lapack-3.6.1-gcc-7.2.0-5sywztc openblas-0.2.20-gcc-7.2.0-kvddide py-numpy-1.13.1-gcc-7.2.0-22n5oub py-six-1.10.0-gcc-7.2.0-3xk5mod
|
||||
-------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 ---------------------------------------------
|
||||
bzip2-1.0.6-gcc-7.2.0-mwamumj netlib-scalapack-2.0.2-gcc-7.2.0-jae3ilo py-numpy-1.14.3-gcc-7.2.0-t3loxvu
|
||||
cmake-3.11.4-gcc-7.2.0-h24ofjs netlib-scalapack-2.0.2-gcc-7.2.0-lqfhvfh py-scipy-1.1.0-gcc-7.2.0-fdiryak
|
||||
gdbm-1.14.1-gcc-7.2.0-zk5lhob netlib-scalapack-2.0.2-gcc-7.2.0-uhzmwog py-setuptools-39.2.0-gcc-7.2.0-jqhycal
|
||||
mpich-3.2.1-gcc-7.2.0-vt5xcat openblas-0.3.0-gcc-7.2.0-pdatzbi python-2.7.15-gcc-7.2.0-c7pnzul
|
||||
ncurses-6.1-gcc-7.2.0-xcgzqdv openmpi-1.10.2-gcc-7.2.0-2h6xmxh readline-7.0-gcc-7.2.0-ccruj2i
|
||||
netlib-lapack-3.8.0-gcc-7.2.0-bcikpen openssl-1.0.2o-gcc-7.2.0-cvldq3v sqlite-3.23.1-gcc-7.2.0-5ltus3a
|
||||
netlib-scalapack-2.0.2-gcc-7.2.0-d3lertf pkgconf-1.4.2-gcc-7.2.0-yoxwmgb zlib-1.2.11-gcc-7.2.0-ezuwp4p
|
||||
|
||||
Use "module spider" to find all possible modules.
|
||||
Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys".
|
||||
@ -546,10 +570,10 @@ you'll see that now the module for ``gcc@7.2.0`` has reappeared:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
root@module-file-tutorial:/# module avail gcc-7.2.0-gcc-5.4.0-go3z4hb
|
||||
root@module-file-tutorial:/# module av gcc-7.2.0-gcc-5.4.0-wwhgyej
|
||||
|
||||
----------------------------------------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 -----------------------------------------------------------------------------
|
||||
gcc-7.2.0-gcc-5.4.0-go3z4hb
|
||||
-------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 ---------------------------------------------
|
||||
gcc-7.2.0-gcc-5.4.0-wwhgyej
|
||||
|
||||
Use "module spider" to find all possible modules.
|
||||
Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys".
|
||||
@ -584,8 +608,6 @@ improve their naming scheme.
|
||||
To reduce the length of the hash or remove it altogether you can
|
||||
use the ``hash_length`` keyword in the configuration file:
|
||||
|
||||
.. TODO: give reasons to remove hashes if they are not evident enough?
|
||||
|
||||
.. code-block:: yaml
|
||||
:emphasize-lines: 3
|
||||
|
||||
@ -654,14 +676,15 @@ Regenerating module files now we obtain:
|
||||
root@module-file-tutorial:/# spack tcl refresh --delete-tree -y
|
||||
==> Regenerating tcl module files
|
||||
|
||||
root@module-file-tutorial:/# module avail
|
||||
root@module-file-tutorial:/# module av
|
||||
|
||||
----------------------------------------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 -----------------------------------------------------------------------------
|
||||
bzip2-1.0.6-gcc-7.2.0 netlib-lapack-3.6.1-gcc-7.2.0 openblas-0.2.20-gcc-7.2.0 py-numpy-1.13.1-gcc-7.2.0-openblas py-six-1.10.0-gcc-7.2.0
|
||||
cmake-3.9.4-gcc-7.2.0 netlib-scalapack-2.0.2-gcc-7.2.0-netlib-mpich openmpi-1.10.2-gcc-7.2.0 py-packaging-16.8-gcc-7.2.0 python-2.7.14-gcc-7.2.0
|
||||
gcc-7.2.0-gcc-5.4.0 netlib-scalapack-2.0.2-gcc-7.2.0-netlib-openmpi openssl-1.0.2k-gcc-7.2.0 py-pyparsing-2.2.0-gcc-7.2.0 readline-7.0-gcc-7.2.0
|
||||
mpich-3.2-gcc-7.2.0 netlib-scalapack-2.0.2-gcc-7.2.0-openblas-mpich pkg-config-0.29.2-gcc-7.2.0 py-scipy-0.19.1-gcc-7.2.0-openblas sqlite-3.20.0-gcc-7.2.0
|
||||
ncurses-6.0-gcc-7.2.0 netlib-scalapack-2.0.2-gcc-7.2.0-openblas-openmpi py-appdirs-1.4.3-gcc-7.2.0 py-setuptools-35.0.2-gcc-7.2.0 zlib-1.2.11-gcc-7.2.0
|
||||
-------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 ---------------------------------------------
|
||||
bzip2-1.0.6-gcc-7.2.0 netlib-lapack-3.8.0-gcc-7.2.0 openmpi-1.10.2-gcc-7.2.0 python-2.7.15-gcc-7.2.0
|
||||
cmake-3.11.4-gcc-7.2.0 netlib-scalapack-2.0.2-gcc-7.2.0-netlib-mpich openssl-1.0.2o-gcc-7.2.0 readline-7.0-gcc-7.2.0
|
||||
gcc-7.2.0-gcc-5.4.0 netlib-scalapack-2.0.2-gcc-7.2.0-netlib-openmpi pkgconf-1.4.2-gcc-7.2.0 sqlite-3.23.1-gcc-7.2.0
|
||||
gdbm-1.14.1-gcc-7.2.0 netlib-scalapack-2.0.2-gcc-7.2.0-openblas-mpich py-numpy-1.14.3-gcc-7.2.0-openblas zlib-1.2.11-gcc-7.2.0
|
||||
mpich-3.2.1-gcc-7.2.0 netlib-scalapack-2.0.2-gcc-7.2.0-openblas-openmpi py-scipy-1.1.0-gcc-7.2.0-openblas
|
||||
ncurses-6.1-gcc-7.2.0 openblas-0.3.0-gcc-7.2.0 py-setuptools-39.2.0-gcc-7.2.0
|
||||
|
||||
Use "module spider" to find all possible modules.
|
||||
Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys".
|
||||
@ -699,14 +722,17 @@ The final result should look like:
|
||||
|
||||
root@module-file-tutorial:/# spack tcl refresh --delete-tree -y
|
||||
==> Regenerating tcl module files
|
||||
root@module-file-tutorial:/# module avail
|
||||
root@module-file-tutorial:/# module av
|
||||
|
||||
----------------------------------------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 -----------------------------------------------------------------------------
|
||||
bzip2/1.0.6-gcc-7.2.0 netlib-lapack/3.6.1-gcc-7.2.0 openblas/0.2.20-gcc-7.2.0 py-numpy/1.13.1-gcc-7.2.0-openblas py-six/1.10.0-gcc-7.2.0
|
||||
cmake/3.9.4-gcc-7.2.0 netlib-scalapack/2.0.2-gcc-7.2.0-netlib-mpich openmpi/1.10.2-gcc-7.2.0 py-packaging/16.8-gcc-7.2.0 python/2.7.14-gcc-7.2.0
|
||||
gcc/7.2.0-gcc-5.4.0 netlib-scalapack/2.0.2-gcc-7.2.0-netlib-openmpi openssl/1.0.2k-gcc-7.2.0 py-pyparsing/2.2.0-gcc-7.2.0 readline/7.0-gcc-7.2.0
|
||||
mpich/3.2-gcc-7.2.0 netlib-scalapack/2.0.2-gcc-7.2.0-openblas-mpich pkg-config/0.29.2-gcc-7.2.0 py-scipy/0.19.1-gcc-7.2.0-openblas sqlite/3.20.0-gcc-7.2.0
|
||||
ncurses/6.0-gcc-7.2.0 netlib-scalapack/2.0.2-gcc-7.2.0-openblas-openmpi (D) py-appdirs/1.4.3-gcc-7.2.0 py-setuptools/35.0.2-gcc-7.2.0 zlib/1.2.11-gcc-7.2.0
|
||||
-------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 ---------------------------------------------
|
||||
bzip2/1.0.6-gcc-7.2.0 netlib-scalapack/2.0.2-gcc-7.2.0-netlib-openmpi py-scipy/1.1.0-gcc-7.2.0-openblas
|
||||
cmake/3.11.4-gcc-7.2.0 netlib-scalapack/2.0.2-gcc-7.2.0-openblas-mpich py-setuptools/39.2.0-gcc-7.2.0
|
||||
gcc/7.2.0-gcc-5.4.0 netlib-scalapack/2.0.2-gcc-7.2.0-openblas-openmpi (D) python/2.7.15-gcc-7.2.0
|
||||
gdbm/1.14.1-gcc-7.2.0 openblas/0.3.0-gcc-7.2.0 readline/7.0-gcc-7.2.0
|
||||
mpich/3.2.1-gcc-7.2.0 openmpi/1.10.2-gcc-7.2.0 sqlite/3.23.1-gcc-7.2.0
|
||||
ncurses/6.1-gcc-7.2.0 openssl/1.0.2o-gcc-7.2.0 zlib/1.2.11-gcc-7.2.0
|
||||
netlib-lapack/3.8.0-gcc-7.2.0 pkgconf/1.4.2-gcc-7.2.0
|
||||
netlib-scalapack/2.0.2-gcc-7.2.0-netlib-mpich py-numpy/1.14.3-gcc-7.2.0-openblas
|
||||
|
||||
Where:
|
||||
D: Default Module
|
||||
@ -772,17 +798,22 @@ Regenerating the module files results in something like:
|
||||
==> Regenerating tcl module files
|
||||
|
||||
root@module-file-tutorial:/# module show gcc
|
||||
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
|
||||
----------------------------------------------------------------------------------------------------------------------------------------------
|
||||
/usr/local/share/spack/modules/linux-ubuntu16.04-x86_64/gcc/7.2.0-gcc-5.4.0:
|
||||
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
|
||||
----------------------------------------------------------------------------------------------------------------------------------------------
|
||||
whatis("The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Ada, and Go, as well as libraries for these languages. ")
|
||||
conflict("gcc")
|
||||
prepend_path("PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/bin")
|
||||
prepend_path("MANPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/share/man")
|
||||
prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib")
|
||||
prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib64")
|
||||
prepend_path("CMAKE_PREFIX_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/")
|
||||
setenv("GCC_ROOT","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd")
|
||||
prepend_path("PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin")
|
||||
prepend_path("MANPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/share/man")
|
||||
prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib")
|
||||
prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib64")
|
||||
prepend_path("CMAKE_PREFIX_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/")
|
||||
setenv("CC","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gcc")
|
||||
setenv("CXX","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/g++")
|
||||
setenv("FC","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
|
||||
setenv("F77","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
|
||||
setenv("F90","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
|
||||
setenv("GCC_ROOT","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o")
|
||||
help([[The GNU Compiler Collection includes front ends for C, C++, Objective-C,
|
||||
Fortran, Ada, and Go, as well as libraries for these languages.
|
||||
]])
|
||||
@ -846,17 +877,22 @@ This time we will be more selective and regenerate only the ``gcc`` and
|
||||
==> Regenerating tcl module files
|
||||
|
||||
root@module-file-tutorial:/# module show gcc
|
||||
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
|
||||
----------------------------------------------------------------------------------------------------------------------------------------------
|
||||
/usr/local/share/spack/modules/linux-ubuntu16.04-x86_64/gcc/7.2.0-gcc-5.4.0:
|
||||
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
|
||||
----------------------------------------------------------------------------------------------------------------------------------------------
|
||||
whatis("The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Ada, and Go, as well as libraries for these languages. ")
|
||||
conflict("gcc")
|
||||
prepend_path("PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/bin")
|
||||
prepend_path("MANPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/share/man")
|
||||
prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib")
|
||||
prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib64")
|
||||
prepend_path("CMAKE_PREFIX_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/")
|
||||
setenv("GCC_ROOT","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd")
|
||||
prepend_path("PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin")
|
||||
prepend_path("MANPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/share/man")
|
||||
prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib")
|
||||
prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib64")
|
||||
prepend_path("CMAKE_PREFIX_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/")
|
||||
setenv("CC","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gcc")
|
||||
setenv("CXX","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/g++")
|
||||
setenv("FC","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
|
||||
setenv("F77","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
|
||||
setenv("F90","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
|
||||
setenv("GCC_ROOT","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o")
|
||||
setenv("CC","gcc")
|
||||
setenv("CXX","g++")
|
||||
setenv("FC","gfortran")
|
||||
@ -867,12 +903,10 @@ This time we will be more selective and regenerate only the ``gcc`` and
|
||||
]])
|
||||
|
||||
root@module-file-tutorial:/# module show openmpi
|
||||
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
|
||||
----------------------------------------------------------------------------------------------------------------------------------------------
|
||||
/usr/local/share/spack/modules/linux-ubuntu16.04-x86_64/openmpi/1.10.2-gcc-7.2.0:
|
||||
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
|
||||
whatis("The Open MPI Project is an open source Message Passing Interface implementation that is developed and maintained by a consortium of academic, research, and industry partners. Open MPI is therefore able t
|
||||
o combine the expertise, technologies, and resources from all across the High Performance Computing community in order to build the best MPI library available. Open MPI offers advantages for system and software
|
||||
vendors, application developers and computer science researchers. ")
|
||||
----------------------------------------------------------------------------------------------------------------------------------------------
|
||||
whatis("An open source Message Passing Interface implementation. ")
|
||||
conflict("openmpi")
|
||||
prepend_path("MANPATH","/usr/share/man")
|
||||
prepend_path("ACLOCAL_PATH","/usr/share/aclocal")
|
||||
@ -880,13 +914,14 @@ This time we will be more selective and regenerate only the ``gcc`` and
|
||||
setenv("OPENMPI_ROOT","/usr")
|
||||
setenv("SLURM_MPI_TYPE","pmi2")
|
||||
setenv("OMPI_MCA_btl_openib_warn_default_gid_prefix","0")
|
||||
help([[The Open MPI Project is an open source Message Passing Interface
|
||||
implementation that is developed and maintained by a consortium of
|
||||
academic, research, and industry partners. Open MPI is therefore able to
|
||||
combine the expertise, technologies, and resources from all across the
|
||||
High Performance Computing community in order to build the best MPI
|
||||
library available. Open MPI offers advantages for system and software
|
||||
vendors, application developers and computer science researchers.
|
||||
help([[An open source Message Passing Interface implementation. The Open MPI
|
||||
Project is an open source Message Passing Interface implementation that
|
||||
is developed and maintained by a consortium of academic, research, and
|
||||
industry partners. Open MPI is therefore able to combine the expertise,
|
||||
technologies, and resources from all across the High Performance
|
||||
Computing community in order to build the best MPI library available.
|
||||
Open MPI offers advantages for system and software vendors, application
|
||||
developers and computer science researchers.
|
||||
]])
|
||||
|
||||
|
||||
@ -954,47 +989,47 @@ Now the ``py-scipy`` module will be:
|
||||
.. code-block:: tcl
|
||||
|
||||
#%Module1.0
|
||||
## Module file created by spack (https://github.com/spack/spack) on 2017-10-07 15:02:14.974937
|
||||
## Module file created by spack (https://github.com/spack/spack) on 2018-07-10 15:15:09.308128
|
||||
##
|
||||
## py-scipy@0.19.1%gcc@7.2.0 arch=linux-ubuntu16.04-x86_64 /7hi7r5j
|
||||
## py-scipy@1.1.0%gcc@7.2.0 arch=linux-ubuntu16.04-x86_64 /fdiryak
|
||||
##
|
||||
|
||||
|
||||
module-whatis "SciPy (pronounced 'Sigh Pie') is a Scientific Library for Python. It provides many user-friendly and efficient numerical routines such as routines for numerical integration and optimization."
|
||||
|
||||
proc ModulesHelp { } {
|
||||
puts stderr "SciPy (pronounced 'Sigh Pie') is a Scientific Library for Python. It"
|
||||
puts stderr "SciPy (pronounced "Sigh Pie") is a Scientific Library for Python. It"
|
||||
puts stderr "provides many user-friendly and efficient numerical routines such as"
|
||||
puts stderr "routines for numerical integration and optimization."
|
||||
}
|
||||
|
||||
if ![ is-loaded python/2.7.14-gcc-7.2.0 ] {
|
||||
puts stderr "Autoloading python/2.7.14-gcc-7.2.0"
|
||||
module load python/2.7.14-gcc-7.2.0
|
||||
if ![ is-loaded python/2.7.15-gcc-7.2.0 ] {
|
||||
puts stderr "Autoloading python/2.7.15-gcc-7.2.0"
|
||||
module load python/2.7.15-gcc-7.2.0
|
||||
}
|
||||
if ![ is-loaded openblas/0.2.20-gcc-7.2.0 ] {
|
||||
puts stderr "Autoloading openblas/0.2.20-gcc-7.2.0"
|
||||
module load openblas/0.2.20-gcc-7.2.0
|
||||
if ![ is-loaded openblas/0.3.0-gcc-7.2.0 ] {
|
||||
puts stderr "Autoloading openblas/0.3.0-gcc-7.2.0"
|
||||
module load openblas/0.3.0-gcc-7.2.0
|
||||
}
|
||||
if ![ is-loaded py-numpy/1.13.1-gcc-7.2.0-openblas ] {
|
||||
puts stderr "Autoloading py-numpy/1.13.1-gcc-7.2.0-openblas"
|
||||
module load py-numpy/1.13.1-gcc-7.2.0-openblas
|
||||
if ![ is-loaded py-numpy/1.14.3-gcc-7.2.0-openblas ] {
|
||||
puts stderr "Autoloading py-numpy/1.14.3-gcc-7.2.0-openblas"
|
||||
module load py-numpy/1.14.3-gcc-7.2.0-openblas
|
||||
}
|
||||
conflict py-scipy
|
||||
|
||||
prepend-path LD_LIBRARY_PATH "/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/py-scipy-0.19.1-7hi7r5jri7bmohh4oontvfxo7rgj4hef/lib"
|
||||
prepend-path CMAKE_PREFIX_PATH "/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/py-scipy-0.19.1-7hi7r5jri7bmohh4oontvfxo7rgj4hef/"
|
||||
prepend-path PYTHONPATH "/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/py-scipy-0.19.1-7hi7r5jri7bmohh4oontvfxo7rgj4hef/lib/python2.7/site-packages"
|
||||
setenv PY_SCIPY_ROOT "/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/py-scipy-0.19.1-7hi7r5jri7bmohh4oontvfxo7rgj4hef"
|
||||
prepend-path LD_LIBRARY_PATH "/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/py-scipy-1.1.0-fdiryak4ywv2krvqo7uzogfcc6uckkdp/lib"
|
||||
prepend-path CMAKE_PREFIX_PATH "/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/py-scipy-1.1.0-fdiryak4ywv2krvqo7uzogfcc6uckkdp/"
|
||||
prepend-path PYTHONPATH "/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/py-scipy-1.1.0-fdiryak4ywv2krvqo7uzogfcc6uckkdp/lib/python2.7/site-packages"
|
||||
setenv PY_SCIPY_ROOT "/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/py-scipy-1.1.0-fdiryak4ywv2krvqo7uzogfcc6uckkdp"
|
||||
|
||||
and will contain code to autoload all the dependencies:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
root@module-file-tutorial:/# module load py-scipy
|
||||
Autoloading python/2.7.14-gcc-7.2.0
|
||||
Autoloading openblas/0.2.20-gcc-7.2.0
|
||||
Autoloading py-numpy/1.13.1-gcc-7.2.0-openblas
|
||||
Autoloading python/2.7.15-gcc-7.2.0
|
||||
Autoloading openblas/0.3.0-gcc-7.2.0
|
||||
Autoloading py-numpy/1.14.3-gcc-7.2.0-openblas
|
||||
|
||||
In case messages are unwanted during the autoload procedure, it will be
|
||||
sufficient to omit the line setting ``verbose: True`` in the configuration file above.
|
||||
@ -1012,14 +1047,21 @@ all the software is visible at the same time:
|
||||
|
||||
root@module-file-tutorial:/# module avail
|
||||
|
||||
----------------------------------------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 -----------------------------------------------------------------------------
|
||||
bzip2/1.0.6-gcc-7.2.0 netlib-lapack/3.6.1-gcc-7.2.0 openblas/0.2.20-gcc-7.2.0 py-numpy/1.13.1-gcc-7.2.0-openblas py-six/1.10.0-gcc-7.2.0
|
||||
cmake/3.9.4-gcc-7.2.0 netlib-scalapack/2.0.2-gcc-7.2.0-netlib-mpich openmpi/1.10.2-gcc-7.2.0 py-packaging/16.8-gcc-7.2.0 python/2.7.14-gcc-7.2.0
|
||||
gcc/7.2.0-gcc-5.4.0 netlib-scalapack/2.0.2-gcc-7.2.0-netlib-openmpi openssl/1.0.2k-gcc-7.2.0 py-pyparsing/2.2.0-gcc-7.2.0 readline/7.0-gcc-7.2.0
|
||||
mpich/3.2-gcc-7.2.0 netlib-scalapack/2.0.2-gcc-7.2.0-openblas-mpich pkg-config/0.29.2-gcc-7.2.0 py-scipy/0.19.1-gcc-7.2.0-openblas sqlite/3.20.0-gcc-7.2.0
|
||||
ncurses/6.0-gcc-7.2.0 netlib-scalapack/2.0.2-gcc-7.2.0-openblas-openmpi (D) py-appdirs/1.4.3-gcc-7.2.0 py-setuptools/35.0.2-gcc-7.2.0 zlib/1.2.11-gcc-7.2.0
|
||||
-------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 ---------------------------------------------
|
||||
bzip2/1.0.6-gcc-7.2.0 openblas/0.3.0-gcc-7.2.0 (L)
|
||||
cmake/3.11.4-gcc-7.2.0 openmpi/1.10.2-gcc-7.2.0
|
||||
gcc/7.2.0-gcc-5.4.0 openssl/1.0.2o-gcc-7.2.0
|
||||
gdbm/1.14.1-gcc-7.2.0 pkgconf/1.4.2-gcc-7.2.0
|
||||
mpich/3.2.1-gcc-7.2.0 py-numpy/1.14.3-gcc-7.2.0-openblas (L)
|
||||
ncurses/6.1-gcc-7.2.0 py-scipy/1.1.0-gcc-7.2.0-openblas (L)
|
||||
netlib-lapack/3.8.0-gcc-7.2.0 py-setuptools/39.2.0-gcc-7.2.0
|
||||
netlib-scalapack/2.0.2-gcc-7.2.0-netlib-mpich python/2.7.15-gcc-7.2.0 (L)
|
||||
netlib-scalapack/2.0.2-gcc-7.2.0-netlib-openmpi readline/7.0-gcc-7.2.0
|
||||
netlib-scalapack/2.0.2-gcc-7.2.0-openblas-mpich sqlite/3.23.1-gcc-7.2.0
|
||||
netlib-scalapack/2.0.2-gcc-7.2.0-openblas-openmpi (D) zlib/1.2.11-gcc-7.2.0
|
||||
|
||||
Where:
|
||||
L: Module is loaded
|
||||
D: Default Module
|
||||
|
||||
Use "module spider" to find all possible modules.
|
||||
@ -1030,11 +1072,12 @@ that nothing prevents users from loading incompatible sets of modules:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
root@module-file-tutorial:/# module load netlib-lapack/3.6.1-gcc-7.2.0 openblas/0.2.20-gcc-7.2.0
|
||||
root@module-file-tutorial:/# module purge
|
||||
root@module-file-tutorial:/# module load netlib-lapack/3.8.0-gcc-7.2.0 openblas/0.3.0-gcc-7.2.0
|
||||
root@module-file-tutorial:/# module list
|
||||
|
||||
Currently Loaded Modules:
|
||||
1) netlib-lapack/3.6.1-gcc-7.2.0 2) openblas/0.2.20-gcc-7.2.0
|
||||
1) netlib-lapack/3.8.0-gcc-7.2.0 2) openblas/0.3.0-gcc-7.2.0
|
||||
|
||||
Even if ``conflicts`` directives are carefully placed in module files, they:
|
||||
|
||||
@ -1129,6 +1172,7 @@ and update ``MODULEPATH`` to point to the ``Core``:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
root@module-file-tutorial:/# module purge
|
||||
root@module-file-tutorial:/# module unuse /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64
|
||||
root@module-file-tutorial:/# module use /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core
|
||||
|
||||
@ -1138,7 +1182,7 @@ asking for the available modules will return:
|
||||
|
||||
root@module-file-tutorial:/# module avail
|
||||
|
||||
---------------------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core ----------------------------------------------------------------------------
|
||||
------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core --------------------------------------------
|
||||
gcc/7.2.0
|
||||
|
||||
Use "module spider" to find all possible modules.
|
||||
@ -1152,11 +1196,12 @@ the ``Compiler`` part of the hierarchy:
|
||||
root@module-file-tutorial:/# module load gcc
|
||||
root@module-file-tutorial:/# module avail
|
||||
|
||||
------------------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/gcc/7.2.0 --------------------------------------------------------------------------
|
||||
bzip2/1.0.6 mpich/3.2 netlib-lapack/3.6.1 openmpi/1.10.2 pkg-config/0.29.2 py-numpy/1.13.1-openblas py-pyparsing/2.2.0 py-setuptools/35.0.2 python/2.7.14 sqlite/3.20.0
|
||||
cmake/3.9.4 ncurses/6.0 openblas/0.2.20 openssl/1.0.2k py-appdirs/1.4.3 py-packaging/16.8 py-scipy/0.19.1-openblas py-six/1.10.0 readline/7.0 zlib/1.2.11
|
||||
----------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/gcc/7.2.0 -----------------------------------------
|
||||
bzip2/1.0.6 mpich/3.2.1 openblas/0.3.0 pkgconf/1.4.2 py-setuptools/39.2.0 sqlite/3.23.1
|
||||
cmake/3.11.4 ncurses/6.1 openmpi/1.10.2 py-numpy/1.14.3-openblas python/2.7.15 zlib/1.2.11
|
||||
gdbm/1.14.1 netlib-lapack/3.8.0 openssl/1.0.2o py-scipy/1.1.0-openblas readline/7.0
|
||||
|
||||
---------------------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core ----------------------------------------------------------------------------
|
||||
------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core --------------------------------------------
|
||||
gcc/7.2.0 (L)
|
||||
|
||||
Where:
|
||||
@ -1173,14 +1218,15 @@ either ``mpich`` or ``openmpi``. Let's start by loading ``mpich``:
|
||||
root@module-file-tutorial:/# module load mpich
|
||||
root@module-file-tutorial:/# module avail
|
||||
|
||||
---------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/mpich/3.2-7gxffhv/gcc/7.2.0 -----------------------------------------------------------------
|
||||
------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/mpich/3.2.1-vt5xcat/gcc/7.2.0 -------------------------------
|
||||
netlib-scalapack/2.0.2-netlib netlib-scalapack/2.0.2-openblas (D)
|
||||
|
||||
------------------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/gcc/7.2.0 --------------------------------------------------------------------------
|
||||
bzip2/1.0.6 mpich/3.2 (L) netlib-lapack/3.6.1 openmpi/1.10.2 pkg-config/0.29.2 py-numpy/1.13.1-openblas py-pyparsing/2.2.0 py-setuptools/35.0.2 python/2.7.14 sqlite/3.20.0
|
||||
cmake/3.9.4 ncurses/6.0 openblas/0.2.20 openssl/1.0.2k py-appdirs/1.4.3 py-packaging/16.8 py-scipy/0.19.1-openblas py-six/1.10.0 readline/7.0 zlib/1.2.11
|
||||
----------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/gcc/7.2.0 -----------------------------------------
|
||||
bzip2/1.0.6 mpich/3.2.1 (L) openblas/0.3.0 pkgconf/1.4.2 py-setuptools/39.2.0 sqlite/3.23.1
|
||||
cmake/3.11.4 ncurses/6.1 openmpi/1.10.2 py-numpy/1.14.3-openblas python/2.7.15 zlib/1.2.11
|
||||
gdbm/1.14.1 netlib-lapack/3.8.0 openssl/1.0.2o py-scipy/1.1.0-openblas readline/7.0
|
||||
|
||||
---------------------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core ----------------------------------------------------------------------------
|
||||
------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core --------------------------------------------
|
||||
gcc/7.2.0 (L)
|
||||
|
||||
Where:
|
||||
@ -1195,7 +1241,7 @@ either ``mpich`` or ``openmpi``. Let's start by loading ``mpich``:
|
||||
root@module-file-tutorial:/# module list
|
||||
|
||||
Currently Loaded Modules:
|
||||
1) gcc/7.2.0 2) mpich/3.2 3) openblas/0.2.20 4) netlib-scalapack/2.0.2-openblas
|
||||
1) gcc/7.2.0 2) mpich/3.2.1 3) openblas/0.3.0 4) netlib-scalapack/2.0.2-openblas
|
||||
|
||||
At this point we can showcase the improved consistency that a hierarchical layout provides
|
||||
over a non-hierarchical one:
|
||||
@ -1204,7 +1250,7 @@ over a non-hierarchical one:
|
||||
|
||||
root@module-file-tutorial:/# module load openmpi
|
||||
|
||||
Lmod is automatically replacing "mpich/3.2" with "openmpi/1.10.2".
|
||||
Lmod is automatically replacing "mpich/3.2.1" with "openmpi/1.10.2".
|
||||
|
||||
Due to MODULEPATH changes, the following have been reloaded:
|
||||
1) netlib-scalapack/2.0.2-openblas
|
||||
@ -1233,10 +1279,9 @@ for ``LAPACK`` implementations:
|
||||
root@module-file-tutorial:/# module list
|
||||
|
||||
Currently Loaded Modules:
|
||||
1) gcc/7.2.0 2) openblas/0.2.20 3) openmpi/1.10.2 4) netlib-scalapack/2.0.2-openblas
|
||||
1) gcc/7.2.0 2) openblas/0.3.0 3) openmpi/1.10.2 4) netlib-scalapack/2.0.2-openblas
|
||||
|
||||
root@module-file-tutorial:/# module load netlib-scalapack/2.0.2-netlib
|
||||
Autoloading netlib-lapack/3.6.1
|
||||
|
||||
The following have been reloaded with a version change:
|
||||
1) netlib-scalapack/2.0.2-openblas => netlib-scalapack/2.0.2-netlib
|
||||
@ -1244,7 +1289,7 @@ for ``LAPACK`` implementations:
|
||||
root@module-file-tutorial:/# module list
|
||||
|
||||
Currently Loaded Modules:
|
||||
1) gcc/7.2.0 2) openblas/0.2.20 3) openmpi/1.10.2 4) netlib-lapack/3.6.1 5) netlib-scalapack/2.0.2-netlib
|
||||
1) gcc/7.2.0 2) openblas/0.3.0 3) openmpi/1.10.2 4) netlib-scalapack/2.0.2-netlib
|
||||
|
||||
Hierarchies that are deeper than ``Core``/``Compiler``/``MPI`` are
|
||||
probably still considered "unusual" or "impractical" at many sites, mainly because
|
||||
@ -1286,7 +1331,6 @@ Coming back to our example, let's add ``lapack`` to the hierarchy and remove any
|
||||
- gcc
|
||||
blacklist:
|
||||
- '%gcc@5.4.0'
|
||||
- readline
|
||||
all:
|
||||
filter:
|
||||
environment_blacklist: ['CPATH', 'LIBRARY_PATH']
|
||||
@ -1324,14 +1368,15 @@ we can see that now we have additional components in the hierarchy:
|
||||
root@module-file-tutorial:/# module load openblas
|
||||
root@module-file-tutorial:/# module avail
|
||||
|
||||
------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/openblas/0.2.20-kvddide/gcc/7.2.0 --------------------------------------------------------------
|
||||
py-numpy/1.13.1 py-scipy/0.19.1
|
||||
----------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/openblas/0.3.0-pdatzbi/gcc/7.2.0 ------------------------------
|
||||
py-numpy/1.14.3-openblas py-scipy/1.1.0-openblas
|
||||
|
||||
------------------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/gcc/7.2.0 --------------------------------------------------------------------------
|
||||
bzip2/1.0.6 mpich/3.2 netlib-lapack/3.6.1 openmpi/1.10.2 pkg-config/0.29.2 py-packaging/16.8 py-setuptools/35.0.2 python/2.7.14 sqlite/3.20.0
|
||||
cmake/3.9.4 ncurses/6.0 openblas/0.2.20 (L) openssl/1.0.2k py-appdirs/1.4.3 py-pyparsing/2.2.0 py-six/1.10.0 readline/7.0 zlib/1.2.11
|
||||
----------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/gcc/7.2.0 -----------------------------------------
|
||||
bzip2/1.0.6 mpich/3.2.1 openblas/0.3.0 (L) pkgconf/1.4.2 readline/7.0
|
||||
cmake/3.11.4 ncurses/6.1 openmpi/1.10.2 py-setuptools/39.2.0 sqlite/3.23.1
|
||||
gdbm/1.14.1 netlib-lapack/3.8.0 openssl/1.0.2o python/2.7.15 zlib/1.2.11
|
||||
|
||||
---------------------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core ----------------------------------------------------------------------------
|
||||
------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core --------------------------------------------
|
||||
gcc/7.2.0 (L)
|
||||
|
||||
Where:
|
||||
@ -1344,17 +1389,18 @@ we can see that now we have additional components in the hierarchy:
|
||||
root@module-file-tutorial:/# module load openmpi
|
||||
root@module-file-tutorial:/# module avail
|
||||
|
||||
-------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/openmpi/1.10.2-ufw7pdi/openblas/0.2.20-kvddide/gcc/7.2.0 --------------------------------------------------
|
||||
netlib-scalapack/2.0.2
|
||||
------------------ /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/openmpi/1.10.2-2h6xmxh/openblas/0.3.0-pdatzbi/gcc/7.2.0 ------------------
|
||||
netlib-scalapack/2.0.2-openblas
|
||||
|
||||
------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/openblas/0.2.20-kvddide/gcc/7.2.0 --------------------------------------------------------------
|
||||
py-numpy/1.13.1 py-scipy/0.19.1
|
||||
----------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/openblas/0.3.0-pdatzbi/gcc/7.2.0 ------------------------------
|
||||
py-numpy/1.14.3-openblas py-scipy/1.1.0-openblas
|
||||
|
||||
------------------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/gcc/7.2.0 --------------------------------------------------------------------------
|
||||
bzip2/1.0.6 mpich/3.2 netlib-lapack/3.6.1 openmpi/1.10.2 (L) pkg-config/0.29.2 py-packaging/16.8 py-setuptools/35.0.2 python/2.7.14 sqlite/3.20.0
|
||||
cmake/3.9.4 ncurses/6.0 openblas/0.2.20 (L) openssl/1.0.2k py-appdirs/1.4.3 py-pyparsing/2.2.0 py-six/1.10.0 readline/7.0 zlib/1.2.11
|
||||
----------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/gcc/7.2.0 -----------------------------------------
|
||||
bzip2/1.0.6 mpich/3.2.1 openblas/0.3.0 (L) pkgconf/1.4.2 readline/7.0
|
||||
cmake/3.11.4 ncurses/6.1 openmpi/1.10.2 (L) py-setuptools/39.2.0 sqlite/3.23.1
|
||||
gdbm/1.14.1 netlib-lapack/3.8.0 openssl/1.0.2o python/2.7.15 zlib/1.2.11
|
||||
|
||||
---------------------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core ----------------------------------------------------------------------------
|
||||
------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core --------------------------------------------
|
||||
gcc/7.2.0 (L)
|
||||
|
||||
Where:
|
||||
@ -1370,22 +1416,22 @@ Both ``MPI`` and ``LAPACK`` providers will now benefit from the same safety feat
|
||||
root@module-file-tutorial:/# module load py-numpy netlib-scalapack
|
||||
root@module-file-tutorial:/# module load mpich
|
||||
|
||||
Lmod is automatically replacing "openmpi/1.10.2" with "mpich/3.2".
|
||||
Lmod is automatically replacing "openmpi/1.10.2" with "mpich/3.2.1".
|
||||
|
||||
|
||||
Due to MODULEPATH changes, the following have been reloaded:
|
||||
1) netlib-scalapack/2.0.2
|
||||
1) netlib-scalapack/2.0.2-openblas
|
||||
|
||||
root@module-file-tutorial:/# module load netlib-lapack
|
||||
|
||||
Lmod is automatically replacing "openblas/0.2.20" with "netlib-lapack/3.6.1".
|
||||
Lmod is automatically replacing "openblas/0.3.0" with "netlib-lapack/3.8.0".
|
||||
|
||||
|
||||
Inactive Modules:
|
||||
1) py-numpy
|
||||
|
||||
Due to MODULEPATH changes, the following have been reloaded:
|
||||
1) netlib-scalapack/2.0.2
|
||||
The following have been reloaded with a version change:
|
||||
1) netlib-scalapack/2.0.2-openblas => netlib-scalapack/2.0.2-netlib
|
||||
|
||||
Because we only compiled ``py-numpy`` with ``openblas`` the module
|
||||
is made inactive when we switch the ``LAPACK`` provider. The user
|
||||
@ -1543,7 +1589,7 @@ If we regenerate the module files one last time:
|
||||
|
||||
.. code-block:: console
|
||||
|
||||
root@module-file-tutorial:/# spack module refresh -y -m lmod netlib-scalapack
|
||||
root@module-file-tutorial:/# spack lmod refresh -y netlib-scalapack
|
||||
==> Regenerating lmod module files
|
||||
|
||||
we'll find the following at the end of each ``netlib-scalapack`` module file:
|
||||
@ -1551,7 +1597,7 @@ we'll find the following at the end of each ``netlib-scalapack`` module file:
|
||||
.. code-block:: lua
|
||||
|
||||
-- Access is granted only to specific groups
|
||||
if not isDir("/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/netlib-scalapack-2.0.2-ax6aza6vyepceyr3fihewp7rbr2vp7ym") then
|
||||
if not isDir("/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/netlib-scalapack-2.0.2-d3lertflood3twaor44eam2kcr4l72ag") then
|
||||
LmodError (
|
||||
"You don't have the necessary rights to run \"netlib-scalapack\".\n\n",
|
||||
"\tPlease write an e-mail to 1234@foo.com if you need further information on how to get access to it.\n"
|
||||
|
||||
@ -36,8 +36,7 @@ RUN spack install lmod && spack clean -a
|
||||
# Build a compiler
|
||||
RUN spack install gcc@7.2.0 && spack clean -a
|
||||
RUN /bin/bash -l -c ' \
|
||||
spack load gcc@7.2.0 \
|
||||
&& spack compiler add'
|
||||
spack compiler add $(spack location -i gcc@7.2.0)/bin'
|
||||
|
||||
# Build the software on top of the compiler
|
||||
RUN spack install netlib-scalapack ^openmpi ^openblas %gcc@7.2.0 \
|
||||
|
||||
Loading…
Reference in New Issue
Block a user