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module file tutorial: rebuilt docker image and updated the script

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This commit is contained in:
Massimiliano Culpo 2018-04-20 14:49:07 +02:00 committed by Todd Gamblin
parent 576f0c98d2
commit 7cbe1aedb7
2 changed files with 216 additions and 171 deletions
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lib/spack/docs/tutorial_modules.rst
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@ -177,15 +177,16 @@ pre-installed in the image:
root@module-file-tutorial:/# which spack root@module-file-tutorial:/# which spack
/usr/local/bin/spack /usr/local/bin/spack
root@module-file-tutorial:/# spack find root@module-file-tutorial:/# spack find
==> 46 installed packages. ==> 43 installed packages.
-- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
autoconf@2.69 gcc@7.2.0 git@2.9.4 isl@0.18 libtool@2.4.6 lua@5.3.4 lua-luaposix@33.4.0 mpc@1.0.3 ncurses@6.0 pkg-config@0.29.2 tcl@8.6.6 autoconf@2.69 gdbm@1.14.1 isl@0.19 lmod@7.7.29 lua-luaposix@33.4.0 mpfr@4.0.1 pkgconf@1.4.2 zlib@1.2.11
automake@1.15.1 gdbm@1.13 gmp@6.1.2 libsigsegv@2.11 lmod@7.7 lua-luafilesystem@1_6_3 m4@1.4.18 mpfr@3.1.5 perl@5.24.1 readline@7.0 zlib@1.2.11 automake@1.16.1 git@2.9.4 libsigsegv@2.11 lua@5.3.4 m4@1.4.18 ncurses@6.1 readline@7.0
gcc@7.2.0 gmp@6.1.2 libtool@2.4.6 lua-luafilesystem@1_6_3 mpc@1.1.0 perl@5.26.2 tcl@8.6.8
-- linux-ubuntu16.04-x86_64 / gcc@7.2.0 ------------------------- -- linux-ubuntu16.04-x86_64 / gcc@7.2.0 -------------------------
bzip2@1.0.6 ncurses@6.0 netlib-scalapack@2.0.2 openblas@0.2.20 pkg-config@0.29.2 py-packaging@16.8 py-setuptools@35.0.2 readline@7.0 bzip2@1.0.6 mpich@3.2.1 netlib-scalapack@2.0.2 netlib-scalapack@2.0.2 openssl@1.0.2o py-scipy@1.1.0 readline@7.0
cmake@3.9.4 netlib-lapack@3.6.1 netlib-scalapack@2.0.2 openmpi@1.10.2 py-appdirs@1.4.3 py-pyparsing@2.2.0 py-six@1.10.0 sqlite@3.20.0 cmake@3.11.4 ncurses@6.1 netlib-scalapack@2.0.2 openblas@0.3.0 pkgconf@1.4.2 py-setuptools@39.2.0 sqlite@3.23.1
mpich@3.2 netlib-scalapack@2.0.2 netlib-scalapack@2.0.2 openssl@1.0.2k py-numpy@1.13.1 py-scipy@0.19.1 python@2.7.14 zlib@1.2.11 gdbm@1.14.1 netlib-lapack@3.8.0 netlib-scalapack@2.0.2 openmpi@1.10.2 py-numpy@1.14.3 python@2.7.15 zlib@1.2.11
Go to :ref:`module_file_tutorial_non_hierarchical` to proceed with the tutorial. Go to :ref:`module_file_tutorial_non_hierarchical` to proceed with the tutorial.
@ -359,17 +360,22 @@ If you arrived to this point you should have an environment that looks similar t
root@module-file-tutorial:/# module avail root@module-file-tutorial:/# module avail
----------------------------------------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 ----------------------------------------------------------------------------- -------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 ---------------------------------------------
autoconf-2.69-gcc-5.4.0-bvabhji libtool-2.4.6-gcc-5.4.0-o2pfwjf ncurses-6.0-gcc-7.2.0-oh6pqty pkg-config-0.29.2-gcc-5.4.0-ae2hwm7 readline-7.0-gcc-5.4.0-gizxpch autoconf-2.69-gcc-5.4.0-cbvv5rj lua-luaposix-33.4.0-gcc-5.4.0-i7w7ynf perl-5.26.2-gcc-5.4.0-n2k4mza
automake-1.15.1-gcc-5.4.0-kaiefe4 lmod-7.7-gcc-5.4.0-okcwjgw netlib-lapack-3.6.1-gcc-7.2.0-5sywztc pkg-config-0.29.2-gcc-7.2.0-76z7ehw readline-7.0-gcc-7.2.0-eqos6rz automake-1.16.1-gcc-5.4.0-lykrrr4 m4-1.4.18-gcc-5.4.0-3z33ecf pkgconf-1.4.2-gcc-5.4.0-fovrh7a
bzip2-1.0.6-gcc-7.2.0-mwamumj lua-5.3.4-gcc-5.4.0-ytxw2gq netlib-scalapack-2.0.2-gcc-7.2.0-5lb2j5p py-appdirs-1.4.3-gcc-7.2.0-7ncu7zr sqlite-3.20.0-gcc-7.2.0-hfmjilk bzip2-1.0.6-gcc-7.2.0-mwamumj mpc-1.1.0-gcc-5.4.0-56lbd3h pkgconf-1.4.2-gcc-7.2.0-yoxwmgb
cmake-3.9.4-gcc-7.2.0-6bxdr6h lua-luafilesystem-1_6_3-gcc-5.4.0-5dzzlt4 netlib-scalapack-2.0.2-gcc-7.2.0-ax6aza6 py-numpy-1.13.1-gcc-7.2.0-22n5oub tcl-8.6.6-gcc-5.4.0-767ls4i cmake-3.11.4-gcc-7.2.0-h24ofjs mpfr-4.0.1-gcc-5.4.0-dy5r7hi py-numpy-1.14.3-gcc-7.2.0-t3loxvu
gcc-7.2.0-gcc-5.4.0-go3z4hb lua-luaposix-33.4.0-gcc-5.4.0-w5jpnwm netlib-scalapack-2.0.2-gcc-7.2.0-c4v5l7j py-packaging-16.8-gcc-7.2.0-c37cjmq zlib-1.2.11-gcc-5.4.0-swly52a gcc-7.2.0-gcc-5.4.0-wwhgyej mpich-3.2.1-gcc-7.2.0-vt5xcat py-scipy-1.1.0-gcc-7.2.0-fdiryak
gdbm-1.13-gcc-5.4.0-vdhoris m4-1.4.18-gcc-5.4.0-r5envx3 netlib-scalapack-2.0.2-gcc-7.2.0-m7rzcmh py-pyparsing-2.2.0-gcc-7.2.0-ahdh5cx zlib-1.2.11-gcc-7.2.0-lv5fabl gdbm-1.14.1-gcc-5.4.0-q4fpyuo ncurses-6.1-gcc-5.4.0-3o765ou py-setuptools-39.2.0-gcc-7.2.0-jqhycal
git-2.9.4-gcc-5.4.0-atwjs4i mpc-1.0.3-gcc-5.4.0-tumbpsh openblas-0.2.20-gcc-7.2.0-kvddide py-scipy-0.19.1-gcc-7.2.0-7hi7r5j gdbm-1.14.1-gcc-7.2.0-zk5lhob ncurses-6.1-gcc-7.2.0-xcgzqdv python-2.7.15-gcc-7.2.0-c7pnzul
gmp-6.1.2-gcc-5.4.0-qc4qcfz mpfr-3.1.5-gcc-5.4.0-mdi6irz openmpi-1.10.2-gcc-7.2.0-ufw7pdi py-setuptools-35.0.2-gcc-7.2.0-cvasi7i git-2.9.4-gcc-5.4.0-mkaoyhz netlib-lapack-3.8.0-gcc-7.2.0-bcikpen readline-7.0-gcc-5.4.0-nxhwrg7
isl-0.18-gcc-5.4.0-vttqout mpich-3.2-gcc-7.2.0-7gxffhv openssl-1.0.2k-gcc-7.2.0-pxv3dh4 py-six-1.10.0-gcc-7.2.0-3xk5mod gmp-6.1.2-gcc-5.4.0-qc4qcfz netlib-scalapack-2.0.2-gcc-7.2.0-d3lertf readline-7.0-gcc-7.2.0-ccruj2i
libsigsegv-2.11-gcc-5.4.0-fypapcp ncurses-6.0-gcc-5.4.0-ukq4tcc perl-5.24.1-gcc-5.4.0-mfzwy6y python-2.7.14-gcc-7.2.0-555u7ea isl-0.19-gcc-5.4.0-hsl7f52 netlib-scalapack-2.0.2-gcc-7.2.0-jae3ilo sqlite-3.23.1-gcc-7.2.0-5ltus3a
libsigsegv-2.11-gcc-5.4.0-fypapcp netlib-scalapack-2.0.2-gcc-7.2.0-lqfhvfh tcl-8.6.8-gcc-5.4.0-qhwyccy
libtool-2.4.6-gcc-5.4.0-o2pfwjf netlib-scalapack-2.0.2-gcc-7.2.0-uhzmwog zlib-1.2.11-gcc-5.4.0-5nus6kn
lmod-7.7.29-gcc-5.4.0-wl6mywv openblas-0.3.0-gcc-7.2.0-pdatzbi zlib-1.2.11-gcc-7.2.0-ezuwp4p
lua-5.3.4-gcc-5.4.0-izvaota openmpi-1.10.2-gcc-7.2.0-2h6xmxh
lua-luafilesystem-1_6_3-gcc-5.4.0-ywlmaou openssl-1.0.2o-gcc-7.2.0-cvldq3v
Use "module spider" to find all possible modules. Use "module spider" to find all possible modules.
Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys". Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys".
@ -380,19 +386,24 @@ Taking a look at the ``gcc`` module you'll see, for example:
.. code-block:: console .. code-block:: console
root@module-file-tutorial:/# module show gcc-7.2.0-gcc-5.4.0-go3z4hb root@module-file-tutorial:/# module show gcc-7.2.0-gcc-5.4.0-wwhgyej
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------
/usr/local/share/spack/modules/linux-ubuntu16.04-x86_64/gcc-7.2.0-gcc-5.4.0-go3z4hb: /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64/gcc-7.2.0-gcc-5.4.0-wwhgyej:
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------
whatis("The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Ada, and Go, as well as libraries for these languages. ") whatis("The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Ada, and Go, as well as libraries for these languages. ")
prepend_path("PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/bin") prepend_path("PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin")
prepend_path("MANPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/share/man") prepend_path("MANPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/share/man")
prepend_path("LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib") prepend_path("LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib")
prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib") prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib")
prepend_path("LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib64") prepend_path("LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib64")
prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib64") prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib64")
prepend_path("CPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/include") prepend_path("CPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/include")
prepend_path("CMAKE_PREFIX_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/") prepend_path("CMAKE_PREFIX_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/")
setenv("CC","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gcc")
setenv("CXX","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/g++")
setenv("FC","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
setenv("F77","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
setenv("F90","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
help([[The GNU Compiler Collection includes front ends for C, C++, Objective-C, help([[The GNU Compiler Collection includes front ends for C, C++, Objective-C,
Fortran, Ada, and Go, as well as libraries for these languages. Fortran, Ada, and Go, as well as libraries for these languages.
]]) ]])
@ -426,15 +437,18 @@ Next you should regenerate all the module files:
==> You are about to regenerate tcl module files for: ==> You are about to regenerate tcl module files for:
-- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
bvabhji autoconf@2.69 vdhoris gdbm@1.13 vttqout isl@0.18 okcwjgw lmod@7.7 w5jpnwm lua-luaposix@33.4.0 mdi6irz mpfr@3.1.5 ae2hwm7 pkg-config@0.29.2 swly52a zlib@1.2.11 cbvv5rj autoconf@2.69 qc4qcfz gmp@6.1.2 izvaota lua@5.3.4 dy5r7hi mpfr@4.0.1 qhwyccy tcl@8.6.8
kaiefe4 automake@1.15.1 atwjs4i git@2.9.4 fypapcp libsigsegv@2.11 ytxw2gq lua@5.3.4 r5envx3 m4@1.4.18 ukq4tcc ncurses@6.0 gizxpch readline@7.0 lykrrr4 automake@1.16.1 hsl7f52 isl@0.19 ywlmaou lua-luafilesystem@1_6_3 3o765ou ncurses@6.1 5nus6kn zlib@1.2.11
go3z4hb gcc@7.2.0 qc4qcfz gmp@6.1.2 o2pfwjf libtool@2.4.6 5dzzlt4 lua-luafilesystem@1_6_3 tumbpsh mpc@1.0.3 mfzwy6y perl@5.24.1 767ls4i tcl@8.6.6 wwhgyej gcc@7.2.0 fypapcp libsigsegv@2.11 i7w7ynf lua-luaposix@33.4.0 n2k4mza perl@5.26.2
q4fpyuo gdbm@1.14.1 o2pfwjf libtool@2.4.6 3z33ecf m4@1.4.18 fovrh7a pkgconf@1.4.2
mkaoyhz git@2.9.4 wl6mywv lmod@7.7.29 56lbd3h mpc@1.1.0 nxhwrg7 readline@7.0
-- linux-ubuntu16.04-x86_64 / gcc@7.2.0 ------------------------- -- linux-ubuntu16.04-x86_64 / gcc@7.2.0 -------------------------
mwamumj bzip2@1.0.6 5sywztc netlib-lapack@3.6.1 m7rzcmh netlib-scalapack@2.0.2 76z7ehw pkg-config@0.29.2 ahdh5cx py-pyparsing@2.2.0 555u7ea python@2.7.14 mwamumj bzip2@1.0.6 bcikpen netlib-lapack@3.8.0 pdatzbi openblas@0.3.0 fdiryak py-scipy@1.1.0 ezuwp4p zlib@1.2.11
6bxdr6h cmake@3.9.4 ax6aza6 netlib-scalapack@2.0.2 kvddide openblas@0.2.20 7ncu7zr py-appdirs@1.4.3 7hi7r5j py-scipy@0.19.1 eqos6rz readline@7.0 h24ofjs cmake@3.11.4 d3lertf netlib-scalapack@2.0.2 2h6xmxh openmpi@1.10.2 jqhycal py-setuptools@39.2.0
7gxffhv mpich@3.2 c4v5l7j netlib-scalapack@2.0.2 ufw7pdi openmpi@1.10.2 22n5oub py-numpy@1.13.1 cvasi7i py-setuptools@35.0.2 hfmjilk sqlite@3.20.0 zk5lhob gdbm@1.14.1 uhzmwog netlib-scalapack@2.0.2 cvldq3v openssl@1.0.2o c7pnzul python@2.7.15
oh6pqty ncurses@6.0 5lb2j5p netlib-scalapack@2.0.2 pxv3dh4 openssl@1.0.2k c37cjmq py-packaging@16.8 3xk5mod py-six@1.10.0 lv5fabl zlib@1.2.11 vt5xcat mpich@3.2.1 lqfhvfh netlib-scalapack@2.0.2 yoxwmgb pkgconf@1.4.2 ccruj2i readline@7.0
xcgzqdv ncurses@6.1 jae3ilo netlib-scalapack@2.0.2 t3loxvu py-numpy@1.14.3 5ltus3a sqlite@3.23.1
==> Do you want to proceed? [y/n] y ==> Do you want to proceed? [y/n] y
==> Regenerating tcl module files ==> Regenerating tcl module files
@ -444,16 +458,21 @@ paths have disappeared:
.. code-block:: console .. code-block:: console
root@module-file-tutorial:/# module show gcc-7.2.0-gcc-5.4.0-go3z4hb root@module-file-tutorial:/# module show gcc-7.2.0-gcc-5.4.0-wwhgyej
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------
/usr/local/share/spack/modules/linux-ubuntu16.04-x86_64/gcc-7.2.0-gcc-5.4.0-go3z4hb: /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64/gcc-7.2.0-gcc-5.4.0-wwhgyej:
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------
whatis("The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Ada, and Go, as well as libraries for these languages. ") whatis("The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Ada, and Go, as well as libraries for these languages. ")
prepend_path("PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/bin") prepend_path("PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin")
prepend_path("MANPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/share/man") prepend_path("MANPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/share/man")
prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib") prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib")
prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib64") prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib64")
prepend_path("CMAKE_PREFIX_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/") prepend_path("CMAKE_PREFIX_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/")
setenv("CC","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gcc")
setenv("CXX","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/g++")
setenv("FC","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
setenv("F77","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
setenv("F90","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
help([[The GNU Compiler Collection includes front ends for C, C++, Objective-C, help([[The GNU Compiler Collection includes front ends for C, C++, Objective-C,
Fortran, Ada, and Go, as well as libraries for these languages. Fortran, Ada, and Go, as well as libraries for these languages.
]]) ]])
@ -488,27 +507,32 @@ and regenerate the module files:
==> You are about to regenerate tcl module files for: ==> You are about to regenerate tcl module files for:
-- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
bvabhji autoconf@2.69 vdhoris gdbm@1.13 vttqout isl@0.18 okcwjgw lmod@7.7 w5jpnwm lua-luaposix@33.4.0 mdi6irz mpfr@3.1.5 ae2hwm7 pkg-config@0.29.2 swly52a zlib@1.2.11 cbvv5rj autoconf@2.69 qc4qcfz gmp@6.1.2 izvaota lua@5.3.4 dy5r7hi mpfr@4.0.1 qhwyccy tcl@8.6.8
kaiefe4 automake@1.15.1 atwjs4i git@2.9.4 fypapcp libsigsegv@2.11 ytxw2gq lua@5.3.4 r5envx3 m4@1.4.18 ukq4tcc ncurses@6.0 gizxpch readline@7.0 lykrrr4 automake@1.16.1 hsl7f52 isl@0.19 ywlmaou lua-luafilesystem@1_6_3 3o765ou ncurses@6.1 5nus6kn zlib@1.2.11
go3z4hb gcc@7.2.0 qc4qcfz gmp@6.1.2 o2pfwjf libtool@2.4.6 5dzzlt4 lua-luafilesystem@1_6_3 tumbpsh mpc@1.0.3 mfzwy6y perl@5.24.1 767ls4i tcl@8.6.6 wwhgyej gcc@7.2.0 fypapcp libsigsegv@2.11 i7w7ynf lua-luaposix@33.4.0 n2k4mza perl@5.26.2
q4fpyuo gdbm@1.14.1 o2pfwjf libtool@2.4.6 3z33ecf m4@1.4.18 fovrh7a pkgconf@1.4.2
mkaoyhz git@2.9.4 wl6mywv lmod@7.7.29 56lbd3h mpc@1.1.0 nxhwrg7 readline@7.0
-- linux-ubuntu16.04-x86_64 / gcc@7.2.0 ------------------------- -- linux-ubuntu16.04-x86_64 / gcc@7.2.0 -------------------------
mwamumj bzip2@1.0.6 5sywztc netlib-lapack@3.6.1 m7rzcmh netlib-scalapack@2.0.2 76z7ehw pkg-config@0.29.2 ahdh5cx py-pyparsing@2.2.0 555u7ea python@2.7.14 mwamumj bzip2@1.0.6 bcikpen netlib-lapack@3.8.0 pdatzbi openblas@0.3.0 fdiryak py-scipy@1.1.0 ezuwp4p zlib@1.2.11
6bxdr6h cmake@3.9.4 ax6aza6 netlib-scalapack@2.0.2 kvddide openblas@0.2.20 7ncu7zr py-appdirs@1.4.3 7hi7r5j py-scipy@0.19.1 eqos6rz readline@7.0 h24ofjs cmake@3.11.4 d3lertf netlib-scalapack@2.0.2 2h6xmxh openmpi@1.10.2 jqhycal py-setuptools@39.2.0
7gxffhv mpich@3.2 c4v5l7j netlib-scalapack@2.0.2 ufw7pdi openmpi@1.10.2 22n5oub py-numpy@1.13.1 cvasi7i py-setuptools@35.0.2 hfmjilk sqlite@3.20.0 zk5lhob gdbm@1.14.1 uhzmwog netlib-scalapack@2.0.2 cvldq3v openssl@1.0.2o c7pnzul python@2.7.15
oh6pqty ncurses@6.0 5lb2j5p netlib-scalapack@2.0.2 pxv3dh4 openssl@1.0.2k c37cjmq py-packaging@16.8 3xk5mod py-six@1.10.0 lv5fabl zlib@1.2.11 vt5xcat mpich@3.2.1 lqfhvfh netlib-scalapack@2.0.2 yoxwmgb pkgconf@1.4.2 ccruj2i readline@7.0
xcgzqdv ncurses@6.1 jae3ilo netlib-scalapack@2.0.2 t3loxvu py-numpy@1.14.3 5ltus3a sqlite@3.23.1
==> Do you want to proceed? [y/n] y ==> Do you want to proceed? [y/n] y
==> Regenerating tcl module files ==> Regenerating tcl module files
root@module-file-tutorial:/# module avail root@module-file-tutorial:/# module avail
----------------------------------------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 ----------------------------------------------------------------------------- -------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 ---------------------------------------------
bzip2-1.0.6-gcc-7.2.0-mwamumj netlib-scalapack-2.0.2-gcc-7.2.0-5lb2j5p openmpi-1.10.2-gcc-7.2.0-ufw7pdi py-packaging-16.8-gcc-7.2.0-c37cjmq python-2.7.14-gcc-7.2.0-555u7ea bzip2-1.0.6-gcc-7.2.0-mwamumj netlib-scalapack-2.0.2-gcc-7.2.0-jae3ilo py-numpy-1.14.3-gcc-7.2.0-t3loxvu
cmake-3.9.4-gcc-7.2.0-6bxdr6h netlib-scalapack-2.0.2-gcc-7.2.0-ax6aza6 openssl-1.0.2k-gcc-7.2.0-pxv3dh4 py-pyparsing-2.2.0-gcc-7.2.0-ahdh5cx readline-7.0-gcc-7.2.0-eqos6rz cmake-3.11.4-gcc-7.2.0-h24ofjs netlib-scalapack-2.0.2-gcc-7.2.0-lqfhvfh py-scipy-1.1.0-gcc-7.2.0-fdiryak
mpich-3.2-gcc-7.2.0-7gxffhv netlib-scalapack-2.0.2-gcc-7.2.0-c4v5l7j pkg-config-0.29.2-gcc-7.2.0-76z7ehw py-scipy-0.19.1-gcc-7.2.0-7hi7r5j sqlite-3.20.0-gcc-7.2.0-hfmjilk gdbm-1.14.1-gcc-7.2.0-zk5lhob netlib-scalapack-2.0.2-gcc-7.2.0-uhzmwog py-setuptools-39.2.0-gcc-7.2.0-jqhycal
ncurses-6.0-gcc-7.2.0-oh6pqty netlib-scalapack-2.0.2-gcc-7.2.0-m7rzcmh py-appdirs-1.4.3-gcc-7.2.0-7ncu7zr py-setuptools-35.0.2-gcc-7.2.0-cvasi7i zlib-1.2.11-gcc-7.2.0-lv5fabl mpich-3.2.1-gcc-7.2.0-vt5xcat openblas-0.3.0-gcc-7.2.0-pdatzbi python-2.7.15-gcc-7.2.0-c7pnzul
netlib-lapack-3.6.1-gcc-7.2.0-5sywztc openblas-0.2.20-gcc-7.2.0-kvddide py-numpy-1.13.1-gcc-7.2.0-22n5oub py-six-1.10.0-gcc-7.2.0-3xk5mod ncurses-6.1-gcc-7.2.0-xcgzqdv openmpi-1.10.2-gcc-7.2.0-2h6xmxh readline-7.0-gcc-7.2.0-ccruj2i
netlib-lapack-3.8.0-gcc-7.2.0-bcikpen openssl-1.0.2o-gcc-7.2.0-cvldq3v sqlite-3.23.1-gcc-7.2.0-5ltus3a
netlib-scalapack-2.0.2-gcc-7.2.0-d3lertf pkgconf-1.4.2-gcc-7.2.0-yoxwmgb zlib-1.2.11-gcc-7.2.0-ezuwp4p
Use "module spider" to find all possible modules. Use "module spider" to find all possible modules.
Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys". Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys".
@ -546,10 +570,10 @@ you'll see that now the module for ``gcc@7.2.0`` has reappeared:
.. code-block:: console .. code-block:: console
root@module-file-tutorial:/# module avail gcc-7.2.0-gcc-5.4.0-go3z4hb root@module-file-tutorial:/# module av gcc-7.2.0-gcc-5.4.0-wwhgyej
----------------------------------------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 ----------------------------------------------------------------------------- -------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 ---------------------------------------------
gcc-7.2.0-gcc-5.4.0-go3z4hb gcc-7.2.0-gcc-5.4.0-wwhgyej
Use "module spider" to find all possible modules. Use "module spider" to find all possible modules.
Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys". Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys".
@ -584,8 +608,6 @@ improve their naming scheme.
To reduce the length of the hash or remove it altogether you can To reduce the length of the hash or remove it altogether you can
use the ``hash_length`` keyword in the configuration file: use the ``hash_length`` keyword in the configuration file:
.. TODO: give reasons to remove hashes if they are not evident enough?
.. code-block:: yaml .. code-block:: yaml
:emphasize-lines: 3 :emphasize-lines: 3
@ -654,14 +676,15 @@ Regenerating module files now we obtain:
root@module-file-tutorial:/# spack tcl refresh --delete-tree -y root@module-file-tutorial:/# spack tcl refresh --delete-tree -y
==> Regenerating tcl module files ==> Regenerating tcl module files
root@module-file-tutorial:/# module avail root@module-file-tutorial:/# module av
----------------------------------------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 ----------------------------------------------------------------------------- -------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 ---------------------------------------------
bzip2-1.0.6-gcc-7.2.0 netlib-lapack-3.6.1-gcc-7.2.0 openblas-0.2.20-gcc-7.2.0 py-numpy-1.13.1-gcc-7.2.0-openblas py-six-1.10.0-gcc-7.2.0 bzip2-1.0.6-gcc-7.2.0 netlib-lapack-3.8.0-gcc-7.2.0 openmpi-1.10.2-gcc-7.2.0 python-2.7.15-gcc-7.2.0
cmake-3.9.4-gcc-7.2.0 netlib-scalapack-2.0.2-gcc-7.2.0-netlib-mpich openmpi-1.10.2-gcc-7.2.0 py-packaging-16.8-gcc-7.2.0 python-2.7.14-gcc-7.2.0 cmake-3.11.4-gcc-7.2.0 netlib-scalapack-2.0.2-gcc-7.2.0-netlib-mpich openssl-1.0.2o-gcc-7.2.0 readline-7.0-gcc-7.2.0
gcc-7.2.0-gcc-5.4.0 netlib-scalapack-2.0.2-gcc-7.2.0-netlib-openmpi openssl-1.0.2k-gcc-7.2.0 py-pyparsing-2.2.0-gcc-7.2.0 readline-7.0-gcc-7.2.0 gcc-7.2.0-gcc-5.4.0 netlib-scalapack-2.0.2-gcc-7.2.0-netlib-openmpi pkgconf-1.4.2-gcc-7.2.0 sqlite-3.23.1-gcc-7.2.0
mpich-3.2-gcc-7.2.0 netlib-scalapack-2.0.2-gcc-7.2.0-openblas-mpich pkg-config-0.29.2-gcc-7.2.0 py-scipy-0.19.1-gcc-7.2.0-openblas sqlite-3.20.0-gcc-7.2.0 gdbm-1.14.1-gcc-7.2.0 netlib-scalapack-2.0.2-gcc-7.2.0-openblas-mpich py-numpy-1.14.3-gcc-7.2.0-openblas zlib-1.2.11-gcc-7.2.0
ncurses-6.0-gcc-7.2.0 netlib-scalapack-2.0.2-gcc-7.2.0-openblas-openmpi py-appdirs-1.4.3-gcc-7.2.0 py-setuptools-35.0.2-gcc-7.2.0 zlib-1.2.11-gcc-7.2.0 mpich-3.2.1-gcc-7.2.0 netlib-scalapack-2.0.2-gcc-7.2.0-openblas-openmpi py-scipy-1.1.0-gcc-7.2.0-openblas
ncurses-6.1-gcc-7.2.0 openblas-0.3.0-gcc-7.2.0 py-setuptools-39.2.0-gcc-7.2.0
Use "module spider" to find all possible modules. Use "module spider" to find all possible modules.
Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys". Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys".
@ -699,14 +722,17 @@ The final result should look like:
root@module-file-tutorial:/# spack tcl refresh --delete-tree -y root@module-file-tutorial:/# spack tcl refresh --delete-tree -y
==> Regenerating tcl module files ==> Regenerating tcl module files
root@module-file-tutorial:/# module avail root@module-file-tutorial:/# module av
----------------------------------------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 ----------------------------------------------------------------------------- -------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 ---------------------------------------------
bzip2/1.0.6-gcc-7.2.0 netlib-lapack/3.6.1-gcc-7.2.0 openblas/0.2.20-gcc-7.2.0 py-numpy/1.13.1-gcc-7.2.0-openblas py-six/1.10.0-gcc-7.2.0 bzip2/1.0.6-gcc-7.2.0 netlib-scalapack/2.0.2-gcc-7.2.0-netlib-openmpi py-scipy/1.1.0-gcc-7.2.0-openblas
cmake/3.9.4-gcc-7.2.0 netlib-scalapack/2.0.2-gcc-7.2.0-netlib-mpich openmpi/1.10.2-gcc-7.2.0 py-packaging/16.8-gcc-7.2.0 python/2.7.14-gcc-7.2.0 cmake/3.11.4-gcc-7.2.0 netlib-scalapack/2.0.2-gcc-7.2.0-openblas-mpich py-setuptools/39.2.0-gcc-7.2.0
gcc/7.2.0-gcc-5.4.0 netlib-scalapack/2.0.2-gcc-7.2.0-netlib-openmpi openssl/1.0.2k-gcc-7.2.0 py-pyparsing/2.2.0-gcc-7.2.0 readline/7.0-gcc-7.2.0 gcc/7.2.0-gcc-5.4.0 netlib-scalapack/2.0.2-gcc-7.2.0-openblas-openmpi (D) python/2.7.15-gcc-7.2.0
mpich/3.2-gcc-7.2.0 netlib-scalapack/2.0.2-gcc-7.2.0-openblas-mpich pkg-config/0.29.2-gcc-7.2.0 py-scipy/0.19.1-gcc-7.2.0-openblas sqlite/3.20.0-gcc-7.2.0 gdbm/1.14.1-gcc-7.2.0 openblas/0.3.0-gcc-7.2.0 readline/7.0-gcc-7.2.0
ncurses/6.0-gcc-7.2.0 netlib-scalapack/2.0.2-gcc-7.2.0-openblas-openmpi (D) py-appdirs/1.4.3-gcc-7.2.0 py-setuptools/35.0.2-gcc-7.2.0 zlib/1.2.11-gcc-7.2.0 mpich/3.2.1-gcc-7.2.0 openmpi/1.10.2-gcc-7.2.0 sqlite/3.23.1-gcc-7.2.0
ncurses/6.1-gcc-7.2.0 openssl/1.0.2o-gcc-7.2.0 zlib/1.2.11-gcc-7.2.0
netlib-lapack/3.8.0-gcc-7.2.0 pkgconf/1.4.2-gcc-7.2.0
netlib-scalapack/2.0.2-gcc-7.2.0-netlib-mpich py-numpy/1.14.3-gcc-7.2.0-openblas
Where: Where:
D: Default Module D: Default Module
@ -772,17 +798,22 @@ Regenerating the module files results in something like:
==> Regenerating tcl module files ==> Regenerating tcl module files
root@module-file-tutorial:/# module show gcc root@module-file-tutorial:/# module show gcc
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------
/usr/local/share/spack/modules/linux-ubuntu16.04-x86_64/gcc/7.2.0-gcc-5.4.0: /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64/gcc/7.2.0-gcc-5.4.0:
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------
whatis("The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Ada, and Go, as well as libraries for these languages. ") whatis("The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Ada, and Go, as well as libraries for these languages. ")
conflict("gcc") conflict("gcc")
prepend_path("PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/bin") prepend_path("PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin")
prepend_path("MANPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/share/man") prepend_path("MANPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/share/man")
prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib") prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib")
prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib64") prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib64")
prepend_path("CMAKE_PREFIX_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/") prepend_path("CMAKE_PREFIX_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/")
setenv("GCC_ROOT","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd") setenv("CC","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gcc")
setenv("CXX","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/g++")
setenv("FC","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
setenv("F77","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
setenv("F90","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
setenv("GCC_ROOT","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o")
help([[The GNU Compiler Collection includes front ends for C, C++, Objective-C, help([[The GNU Compiler Collection includes front ends for C, C++, Objective-C,
Fortran, Ada, and Go, as well as libraries for these languages. Fortran, Ada, and Go, as well as libraries for these languages.
]]) ]])
@ -846,17 +877,22 @@ This time we will be more selective and regenerate only the ``gcc`` and
==> Regenerating tcl module files ==> Regenerating tcl module files
root@module-file-tutorial:/# module show gcc root@module-file-tutorial:/# module show gcc
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------
/usr/local/share/spack/modules/linux-ubuntu16.04-x86_64/gcc/7.2.0-gcc-5.4.0: /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64/gcc/7.2.0-gcc-5.4.0:
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------
whatis("The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Ada, and Go, as well as libraries for these languages. ") whatis("The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Ada, and Go, as well as libraries for these languages. ")
conflict("gcc") conflict("gcc")
prepend_path("PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/bin") prepend_path("PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin")
prepend_path("MANPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/share/man") prepend_path("MANPATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/share/man")
prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib") prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib")
prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/lib64") prepend_path("LD_LIBRARY_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/lib64")
prepend_path("CMAKE_PREFIX_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd/") prepend_path("CMAKE_PREFIX_PATH","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/")
setenv("GCC_ROOT","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-go3z4hbsa6wycoaedr3fforx5qnazdhd") setenv("CC","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gcc")
setenv("CXX","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/g++")
setenv("FC","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
setenv("F77","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
setenv("F90","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o/bin/gfortran")
setenv("GCC_ROOT","/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-wwhgyejrjfjtdsgga3hn246bc64jtr6o")
setenv("CC","gcc") setenv("CC","gcc")
setenv("CXX","g++") setenv("CXX","g++")
setenv("FC","gfortran") setenv("FC","gfortran")
@ -867,12 +903,10 @@ This time we will be more selective and regenerate only the ``gcc`` and
]]) ]])
root@module-file-tutorial:/# module show openmpi root@module-file-tutorial:/# module show openmpi
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------
/usr/local/share/spack/modules/linux-ubuntu16.04-x86_64/openmpi/1.10.2-gcc-7.2.0: /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64/openmpi/1.10.2-gcc-7.2.0:
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------
whatis("The Open MPI Project is an open source Message Passing Interface implementation that is developed and maintained by a consortium of academic, research, and industry partners. Open MPI is therefore able t whatis("An open source Message Passing Interface implementation. ")
o combine the expertise, technologies, and resources from all across the High Performance Computing community in order to build the best MPI library available. Open MPI offers advantages for system and software
vendors, application developers and computer science researchers. ")
conflict("openmpi") conflict("openmpi")
prepend_path("MANPATH","/usr/share/man") prepend_path("MANPATH","/usr/share/man")
prepend_path("ACLOCAL_PATH","/usr/share/aclocal") prepend_path("ACLOCAL_PATH","/usr/share/aclocal")
@ -880,13 +914,14 @@ This time we will be more selective and regenerate only the ``gcc`` and
setenv("OPENMPI_ROOT","/usr") setenv("OPENMPI_ROOT","/usr")
setenv("SLURM_MPI_TYPE","pmi2") setenv("SLURM_MPI_TYPE","pmi2")
setenv("OMPI_MCA_btl_openib_warn_default_gid_prefix","0") setenv("OMPI_MCA_btl_openib_warn_default_gid_prefix","0")
help([[The Open MPI Project is an open source Message Passing Interface help([[An open source Message Passing Interface implementation. The Open MPI
implementation that is developed and maintained by a consortium of Project is an open source Message Passing Interface implementation that
academic, research, and industry partners. Open MPI is therefore able to is developed and maintained by a consortium of academic, research, and
combine the expertise, technologies, and resources from all across the industry partners. Open MPI is therefore able to combine the expertise,
High Performance Computing community in order to build the best MPI technologies, and resources from all across the High Performance
library available. Open MPI offers advantages for system and software Computing community in order to build the best MPI library available.
vendors, application developers and computer science researchers. Open MPI offers advantages for system and software vendors, application
developers and computer science researchers.
]]) ]])
@ -954,47 +989,47 @@ Now the ``py-scipy`` module will be:
.. code-block:: tcl .. code-block:: tcl
#%Module1.0 #%Module1.0
## Module file created by spack (https://github.com/spack/spack) on 2017-10-07 15:02:14.974937 ## Module file created by spack (https://github.com/spack/spack) on 2018-07-10 15:15:09.308128
## ##
## py-scipy@0.19.1%gcc@7.2.0 arch=linux-ubuntu16.04-x86_64 /7hi7r5j ## py-scipy@1.1.0%gcc@7.2.0 arch=linux-ubuntu16.04-x86_64 /fdiryak
## ##
module-whatis "SciPy (pronounced 'Sigh Pie') is a Scientific Library for Python. It provides many user-friendly and efficient numerical routines such as routines for numerical integration and optimization." module-whatis "SciPy (pronounced 'Sigh Pie') is a Scientific Library for Python. It provides many user-friendly and efficient numerical routines such as routines for numerical integration and optimization."
proc ModulesHelp { } { proc ModulesHelp { } {
puts stderr "SciPy (pronounced 'Sigh Pie') is a Scientific Library for Python. It" puts stderr "SciPy (pronounced "Sigh Pie") is a Scientific Library for Python. It"
puts stderr "provides many user-friendly and efficient numerical routines such as" puts stderr "provides many user-friendly and efficient numerical routines such as"
puts stderr "routines for numerical integration and optimization." puts stderr "routines for numerical integration and optimization."
} }
if ![ is-loaded python/2.7.14-gcc-7.2.0 ] { if ![ is-loaded python/2.7.15-gcc-7.2.0 ] {
puts stderr "Autoloading python/2.7.14-gcc-7.2.0" puts stderr "Autoloading python/2.7.15-gcc-7.2.0"
module load python/2.7.14-gcc-7.2.0 module load python/2.7.15-gcc-7.2.0
} }
if ![ is-loaded openblas/0.2.20-gcc-7.2.0 ] { if ![ is-loaded openblas/0.3.0-gcc-7.2.0 ] {
puts stderr "Autoloading openblas/0.2.20-gcc-7.2.0" puts stderr "Autoloading openblas/0.3.0-gcc-7.2.0"
module load openblas/0.2.20-gcc-7.2.0 module load openblas/0.3.0-gcc-7.2.0
} }
if ![ is-loaded py-numpy/1.13.1-gcc-7.2.0-openblas ] { if ![ is-loaded py-numpy/1.14.3-gcc-7.2.0-openblas ] {
puts stderr "Autoloading py-numpy/1.13.1-gcc-7.2.0-openblas" puts stderr "Autoloading py-numpy/1.14.3-gcc-7.2.0-openblas"
module load py-numpy/1.13.1-gcc-7.2.0-openblas module load py-numpy/1.14.3-gcc-7.2.0-openblas
} }
conflict py-scipy conflict py-scipy
prepend-path LD_LIBRARY_PATH "/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/py-scipy-0.19.1-7hi7r5jri7bmohh4oontvfxo7rgj4hef/lib" prepend-path LD_LIBRARY_PATH "/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/py-scipy-1.1.0-fdiryak4ywv2krvqo7uzogfcc6uckkdp/lib"
prepend-path CMAKE_PREFIX_PATH "/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/py-scipy-0.19.1-7hi7r5jri7bmohh4oontvfxo7rgj4hef/" prepend-path CMAKE_PREFIX_PATH "/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/py-scipy-1.1.0-fdiryak4ywv2krvqo7uzogfcc6uckkdp/"
prepend-path PYTHONPATH "/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/py-scipy-0.19.1-7hi7r5jri7bmohh4oontvfxo7rgj4hef/lib/python2.7/site-packages" prepend-path PYTHONPATH "/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/py-scipy-1.1.0-fdiryak4ywv2krvqo7uzogfcc6uckkdp/lib/python2.7/site-packages"
setenv PY_SCIPY_ROOT "/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/py-scipy-0.19.1-7hi7r5jri7bmohh4oontvfxo7rgj4hef" setenv PY_SCIPY_ROOT "/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/py-scipy-1.1.0-fdiryak4ywv2krvqo7uzogfcc6uckkdp"
and will contain code to autoload all the dependencies: and will contain code to autoload all the dependencies:
.. code-block:: console .. code-block:: console
root@module-file-tutorial:/# module load py-scipy root@module-file-tutorial:/# module load py-scipy
Autoloading python/2.7.14-gcc-7.2.0 Autoloading python/2.7.15-gcc-7.2.0
Autoloading openblas/0.2.20-gcc-7.2.0 Autoloading openblas/0.3.0-gcc-7.2.0
Autoloading py-numpy/1.13.1-gcc-7.2.0-openblas Autoloading py-numpy/1.14.3-gcc-7.2.0-openblas
In case messages are unwanted during the autoload procedure, it will be In case messages are unwanted during the autoload procedure, it will be
sufficient to omit the line setting ``verbose: True`` in the configuration file above. sufficient to omit the line setting ``verbose: True`` in the configuration file above.
@ -1012,14 +1047,21 @@ all the software is visible at the same time:
root@module-file-tutorial:/# module avail root@module-file-tutorial:/# module avail
----------------------------------------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 ----------------------------------------------------------------------------- -------------------------------------------- /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 ---------------------------------------------
bzip2/1.0.6-gcc-7.2.0 netlib-lapack/3.6.1-gcc-7.2.0 openblas/0.2.20-gcc-7.2.0 py-numpy/1.13.1-gcc-7.2.0-openblas py-six/1.10.0-gcc-7.2.0 bzip2/1.0.6-gcc-7.2.0 openblas/0.3.0-gcc-7.2.0 (L)
cmake/3.9.4-gcc-7.2.0 netlib-scalapack/2.0.2-gcc-7.2.0-netlib-mpich openmpi/1.10.2-gcc-7.2.0 py-packaging/16.8-gcc-7.2.0 python/2.7.14-gcc-7.2.0 cmake/3.11.4-gcc-7.2.0 openmpi/1.10.2-gcc-7.2.0
gcc/7.2.0-gcc-5.4.0 netlib-scalapack/2.0.2-gcc-7.2.0-netlib-openmpi openssl/1.0.2k-gcc-7.2.0 py-pyparsing/2.2.0-gcc-7.2.0 readline/7.0-gcc-7.2.0 gcc/7.2.0-gcc-5.4.0 openssl/1.0.2o-gcc-7.2.0
mpich/3.2-gcc-7.2.0 netlib-scalapack/2.0.2-gcc-7.2.0-openblas-mpich pkg-config/0.29.2-gcc-7.2.0 py-scipy/0.19.1-gcc-7.2.0-openblas sqlite/3.20.0-gcc-7.2.0 gdbm/1.14.1-gcc-7.2.0 pkgconf/1.4.2-gcc-7.2.0
ncurses/6.0-gcc-7.2.0 netlib-scalapack/2.0.2-gcc-7.2.0-openblas-openmpi (D) py-appdirs/1.4.3-gcc-7.2.0 py-setuptools/35.0.2-gcc-7.2.0 zlib/1.2.11-gcc-7.2.0 mpich/3.2.1-gcc-7.2.0 py-numpy/1.14.3-gcc-7.2.0-openblas (L)
ncurses/6.1-gcc-7.2.0 py-scipy/1.1.0-gcc-7.2.0-openblas (L)
netlib-lapack/3.8.0-gcc-7.2.0 py-setuptools/39.2.0-gcc-7.2.0
netlib-scalapack/2.0.2-gcc-7.2.0-netlib-mpich python/2.7.15-gcc-7.2.0 (L)
netlib-scalapack/2.0.2-gcc-7.2.0-netlib-openmpi readline/7.0-gcc-7.2.0
netlib-scalapack/2.0.2-gcc-7.2.0-openblas-mpich sqlite/3.23.1-gcc-7.2.0
netlib-scalapack/2.0.2-gcc-7.2.0-openblas-openmpi (D) zlib/1.2.11-gcc-7.2.0
Where: Where:
L: Module is loaded
D: Default Module D: Default Module
Use "module spider" to find all possible modules. Use "module spider" to find all possible modules.
@ -1030,11 +1072,12 @@ that nothing prevents users from loading incompatible sets of modules:
.. code-block:: console .. code-block:: console
root@module-file-tutorial:/# module load netlib-lapack/3.6.1-gcc-7.2.0 openblas/0.2.20-gcc-7.2.0 root@module-file-tutorial:/# module purge
root@module-file-tutorial:/# module load netlib-lapack/3.8.0-gcc-7.2.0 openblas/0.3.0-gcc-7.2.0
root@module-file-tutorial:/# module list root@module-file-tutorial:/# module list
Currently Loaded Modules: Currently Loaded Modules:
1) netlib-lapack/3.6.1-gcc-7.2.0 2) openblas/0.2.20-gcc-7.2.0 1) netlib-lapack/3.8.0-gcc-7.2.0 2) openblas/0.3.0-gcc-7.2.0
Even if ``conflicts`` directives are carefully placed in module files, they: Even if ``conflicts`` directives are carefully placed in module files, they:
@ -1129,6 +1172,7 @@ and update ``MODULEPATH`` to point to the ``Core``:
.. code-block:: console .. code-block:: console
root@module-file-tutorial:/# module purge
root@module-file-tutorial:/# module unuse /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64 root@module-file-tutorial:/# module unuse /usr/local/share/spack/modules/linux-ubuntu16.04-x86_64
root@module-file-tutorial:/# module use /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core root@module-file-tutorial:/# module use /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core
@ -1138,7 +1182,7 @@ asking for the available modules will return:
root@module-file-tutorial:/# module avail root@module-file-tutorial:/# module avail
---------------------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core ---------------------------------------------------------------------------- ------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core --------------------------------------------
gcc/7.2.0 gcc/7.2.0
Use "module spider" to find all possible modules. Use "module spider" to find all possible modules.
@ -1152,11 +1196,12 @@ the ``Compiler`` part of the hierarchy:
root@module-file-tutorial:/# module load gcc root@module-file-tutorial:/# module load gcc
root@module-file-tutorial:/# module avail root@module-file-tutorial:/# module avail
------------------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/gcc/7.2.0 -------------------------------------------------------------------------- ----------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/gcc/7.2.0 -----------------------------------------
bzip2/1.0.6 mpich/3.2 netlib-lapack/3.6.1 openmpi/1.10.2 pkg-config/0.29.2 py-numpy/1.13.1-openblas py-pyparsing/2.2.0 py-setuptools/35.0.2 python/2.7.14 sqlite/3.20.0 bzip2/1.0.6 mpich/3.2.1 openblas/0.3.0 pkgconf/1.4.2 py-setuptools/39.2.0 sqlite/3.23.1
cmake/3.9.4 ncurses/6.0 openblas/0.2.20 openssl/1.0.2k py-appdirs/1.4.3 py-packaging/16.8 py-scipy/0.19.1-openblas py-six/1.10.0 readline/7.0 zlib/1.2.11 cmake/3.11.4 ncurses/6.1 openmpi/1.10.2 py-numpy/1.14.3-openblas python/2.7.15 zlib/1.2.11
gdbm/1.14.1 netlib-lapack/3.8.0 openssl/1.0.2o py-scipy/1.1.0-openblas readline/7.0
---------------------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core ---------------------------------------------------------------------------- ------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core --------------------------------------------
gcc/7.2.0 (L) gcc/7.2.0 (L)
Where: Where:
@ -1173,14 +1218,15 @@ either ``mpich`` or ``openmpi``. Let's start by loading ``mpich``:
root@module-file-tutorial:/# module load mpich root@module-file-tutorial:/# module load mpich
root@module-file-tutorial:/# module avail root@module-file-tutorial:/# module avail
---------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/mpich/3.2-7gxffhv/gcc/7.2.0 ----------------------------------------------------------------- ------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/mpich/3.2.1-vt5xcat/gcc/7.2.0 -------------------------------
netlib-scalapack/2.0.2-netlib netlib-scalapack/2.0.2-openblas (D) netlib-scalapack/2.0.2-netlib netlib-scalapack/2.0.2-openblas (D)
------------------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/gcc/7.2.0 -------------------------------------------------------------------------- ----------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/gcc/7.2.0 -----------------------------------------
bzip2/1.0.6 mpich/3.2 (L) netlib-lapack/3.6.1 openmpi/1.10.2 pkg-config/0.29.2 py-numpy/1.13.1-openblas py-pyparsing/2.2.0 py-setuptools/35.0.2 python/2.7.14 sqlite/3.20.0 bzip2/1.0.6 mpich/3.2.1 (L) openblas/0.3.0 pkgconf/1.4.2 py-setuptools/39.2.0 sqlite/3.23.1
cmake/3.9.4 ncurses/6.0 openblas/0.2.20 openssl/1.0.2k py-appdirs/1.4.3 py-packaging/16.8 py-scipy/0.19.1-openblas py-six/1.10.0 readline/7.0 zlib/1.2.11 cmake/3.11.4 ncurses/6.1 openmpi/1.10.2 py-numpy/1.14.3-openblas python/2.7.15 zlib/1.2.11
gdbm/1.14.1 netlib-lapack/3.8.0 openssl/1.0.2o py-scipy/1.1.0-openblas readline/7.0
---------------------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core ---------------------------------------------------------------------------- ------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core --------------------------------------------
gcc/7.2.0 (L) gcc/7.2.0 (L)
Where: Where:
@ -1195,7 +1241,7 @@ either ``mpich`` or ``openmpi``. Let's start by loading ``mpich``:
root@module-file-tutorial:/# module list root@module-file-tutorial:/# module list
Currently Loaded Modules: Currently Loaded Modules:
1) gcc/7.2.0 2) mpich/3.2 3) openblas/0.2.20 4) netlib-scalapack/2.0.2-openblas 1) gcc/7.2.0 2) mpich/3.2.1 3) openblas/0.3.0 4) netlib-scalapack/2.0.2-openblas
At this point we can showcase the improved consistency that a hierarchical layout provides At this point we can showcase the improved consistency that a hierarchical layout provides
over a non-hierarchical one: over a non-hierarchical one:
@ -1204,7 +1250,7 @@ over a non-hierarchical one:
root@module-file-tutorial:/# module load openmpi root@module-file-tutorial:/# module load openmpi
Lmod is automatically replacing "mpich/3.2" with "openmpi/1.10.2". Lmod is automatically replacing "mpich/3.2.1" with "openmpi/1.10.2".
Due to MODULEPATH changes, the following have been reloaded: Due to MODULEPATH changes, the following have been reloaded:
1) netlib-scalapack/2.0.2-openblas 1) netlib-scalapack/2.0.2-openblas
@ -1233,10 +1279,9 @@ for ``LAPACK`` implementations:
root@module-file-tutorial:/# module list root@module-file-tutorial:/# module list
Currently Loaded Modules: Currently Loaded Modules:
1) gcc/7.2.0 2) openblas/0.2.20 3) openmpi/1.10.2 4) netlib-scalapack/2.0.2-openblas 1) gcc/7.2.0 2) openblas/0.3.0 3) openmpi/1.10.2 4) netlib-scalapack/2.0.2-openblas
root@module-file-tutorial:/# module load netlib-scalapack/2.0.2-netlib root@module-file-tutorial:/# module load netlib-scalapack/2.0.2-netlib
Autoloading netlib-lapack/3.6.1
The following have been reloaded with a version change: The following have been reloaded with a version change:
1) netlib-scalapack/2.0.2-openblas => netlib-scalapack/2.0.2-netlib 1) netlib-scalapack/2.0.2-openblas => netlib-scalapack/2.0.2-netlib
@ -1244,7 +1289,7 @@ for ``LAPACK`` implementations:
root@module-file-tutorial:/# module list root@module-file-tutorial:/# module list
Currently Loaded Modules: Currently Loaded Modules:
1) gcc/7.2.0 2) openblas/0.2.20 3) openmpi/1.10.2 4) netlib-lapack/3.6.1 5) netlib-scalapack/2.0.2-netlib 1) gcc/7.2.0 2) openblas/0.3.0 3) openmpi/1.10.2 4) netlib-scalapack/2.0.2-netlib
Hierarchies that are deeper than ``Core``/``Compiler``/``MPI`` are Hierarchies that are deeper than ``Core``/``Compiler``/``MPI`` are
probably still considered "unusual" or "impractical" at many sites, mainly because probably still considered "unusual" or "impractical" at many sites, mainly because
@ -1286,7 +1331,6 @@ Coming back to our example, let's add ``lapack`` to the hierarchy and remove any
- gcc - gcc
blacklist: blacklist:
- '%gcc@5.4.0' - '%gcc@5.4.0'
- readline
all: all:
filter: filter:
environment_blacklist: ['CPATH', 'LIBRARY_PATH'] environment_blacklist: ['CPATH', 'LIBRARY_PATH']
@ -1324,14 +1368,15 @@ we can see that now we have additional components in the hierarchy:
root@module-file-tutorial:/# module load openblas root@module-file-tutorial:/# module load openblas
root@module-file-tutorial:/# module avail root@module-file-tutorial:/# module avail
------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/openblas/0.2.20-kvddide/gcc/7.2.0 -------------------------------------------------------------- ----------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/openblas/0.3.0-pdatzbi/gcc/7.2.0 ------------------------------
py-numpy/1.13.1 py-scipy/0.19.1 py-numpy/1.14.3-openblas py-scipy/1.1.0-openblas
------------------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/gcc/7.2.0 -------------------------------------------------------------------------- ----------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/gcc/7.2.0 -----------------------------------------
bzip2/1.0.6 mpich/3.2 netlib-lapack/3.6.1 openmpi/1.10.2 pkg-config/0.29.2 py-packaging/16.8 py-setuptools/35.0.2 python/2.7.14 sqlite/3.20.0 bzip2/1.0.6 mpich/3.2.1 openblas/0.3.0 (L) pkgconf/1.4.2 readline/7.0
cmake/3.9.4 ncurses/6.0 openblas/0.2.20 (L) openssl/1.0.2k py-appdirs/1.4.3 py-pyparsing/2.2.0 py-six/1.10.0 readline/7.0 zlib/1.2.11 cmake/3.11.4 ncurses/6.1 openmpi/1.10.2 py-setuptools/39.2.0 sqlite/3.23.1
gdbm/1.14.1 netlib-lapack/3.8.0 openssl/1.0.2o python/2.7.15 zlib/1.2.11
---------------------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core ---------------------------------------------------------------------------- ------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core --------------------------------------------
gcc/7.2.0 (L) gcc/7.2.0 (L)
Where: Where:
@ -1344,17 +1389,18 @@ we can see that now we have additional components in the hierarchy:
root@module-file-tutorial:/# module load openmpi root@module-file-tutorial:/# module load openmpi
root@module-file-tutorial:/# module avail root@module-file-tutorial:/# module avail
-------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/openmpi/1.10.2-ufw7pdi/openblas/0.2.20-kvddide/gcc/7.2.0 -------------------------------------------------- ------------------ /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/openmpi/1.10.2-2h6xmxh/openblas/0.3.0-pdatzbi/gcc/7.2.0 ------------------
netlib-scalapack/2.0.2 netlib-scalapack/2.0.2-openblas
------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/openblas/0.2.20-kvddide/gcc/7.2.0 -------------------------------------------------------------- ----------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/openblas/0.3.0-pdatzbi/gcc/7.2.0 ------------------------------
py-numpy/1.13.1 py-scipy/0.19.1 py-numpy/1.14.3-openblas py-scipy/1.1.0-openblas
------------------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/gcc/7.2.0 -------------------------------------------------------------------------- ----------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/gcc/7.2.0 -----------------------------------------
bzip2/1.0.6 mpich/3.2 netlib-lapack/3.6.1 openmpi/1.10.2 (L) pkg-config/0.29.2 py-packaging/16.8 py-setuptools/35.0.2 python/2.7.14 sqlite/3.20.0 bzip2/1.0.6 mpich/3.2.1 openblas/0.3.0 (L) pkgconf/1.4.2 readline/7.0
cmake/3.9.4 ncurses/6.0 openblas/0.2.20 (L) openssl/1.0.2k py-appdirs/1.4.3 py-pyparsing/2.2.0 py-six/1.10.0 readline/7.0 zlib/1.2.11 cmake/3.11.4 ncurses/6.1 openmpi/1.10.2 (L) py-setuptools/39.2.0 sqlite/3.23.1
gdbm/1.14.1 netlib-lapack/3.8.0 openssl/1.0.2o python/2.7.15 zlib/1.2.11
---------------------------------------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core ---------------------------------------------------------------------------- ------------------------------------------- /usr/local/share/spack/lmod/linux-ubuntu16.04-x86_64/Core --------------------------------------------
gcc/7.2.0 (L) gcc/7.2.0 (L)
Where: Where:
@ -1370,22 +1416,22 @@ Both ``MPI`` and ``LAPACK`` providers will now benefit from the same safety feat
root@module-file-tutorial:/# module load py-numpy netlib-scalapack root@module-file-tutorial:/# module load py-numpy netlib-scalapack
root@module-file-tutorial:/# module load mpich root@module-file-tutorial:/# module load mpich
Lmod is automatically replacing "openmpi/1.10.2" with "mpich/3.2". Lmod is automatically replacing "openmpi/1.10.2" with "mpich/3.2.1".
Due to MODULEPATH changes, the following have been reloaded: Due to MODULEPATH changes, the following have been reloaded:
1) netlib-scalapack/2.0.2 1) netlib-scalapack/2.0.2-openblas
root@module-file-tutorial:/# module load netlib-lapack root@module-file-tutorial:/# module load netlib-lapack
Lmod is automatically replacing "openblas/0.2.20" with "netlib-lapack/3.6.1". Lmod is automatically replacing "openblas/0.3.0" with "netlib-lapack/3.8.0".
Inactive Modules: Inactive Modules:
1) py-numpy 1) py-numpy
Due to MODULEPATH changes, the following have been reloaded: The following have been reloaded with a version change:
1) netlib-scalapack/2.0.2 1) netlib-scalapack/2.0.2-openblas => netlib-scalapack/2.0.2-netlib
Because we only compiled ``py-numpy`` with ``openblas`` the module Because we only compiled ``py-numpy`` with ``openblas`` the module
is made inactive when we switch the ``LAPACK`` provider. The user is made inactive when we switch the ``LAPACK`` provider. The user
@ -1543,7 +1589,7 @@ If we regenerate the module files one last time:
.. code-block:: console .. code-block:: console
root@module-file-tutorial:/# spack module refresh -y -m lmod netlib-scalapack root@module-file-tutorial:/# spack lmod refresh -y netlib-scalapack
==> Regenerating lmod module files ==> Regenerating lmod module files
we'll find the following at the end of each ``netlib-scalapack`` module file: we'll find the following at the end of each ``netlib-scalapack`` module file:
@ -1551,7 +1597,7 @@ we'll find the following at the end of each ``netlib-scalapack`` module file:
.. code-block:: lua .. code-block:: lua
-- Access is granted only to specific groups -- Access is granted only to specific groups
if not isDir("/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/netlib-scalapack-2.0.2-ax6aza6vyepceyr3fihewp7rbr2vp7ym") then if not isDir("/usr/local/opt/spack/linux-ubuntu16.04-x86_64/gcc-7.2.0/netlib-scalapack-2.0.2-d3lertflood3twaor44eam2kcr4l72ag") then
LmodError ( LmodError (
"You don't have the necessary rights to run \"netlib-scalapack\".\n\n", "You don't have the necessary rights to run \"netlib-scalapack\".\n\n",
"\tPlease write an e-mail to 1234@foo.com if you need further information on how to get access to it.\n" "\tPlease write an e-mail to 1234@foo.com if you need further information on how to get access to it.\n"

3
share/spack/docs/docker/module-file-tutorial/Dockerfile
View File

@ -36,8 +36,7 @@ RUN spack install lmod && spack clean -a
# Build a compiler # Build a compiler
RUN spack install gcc@7.2.0 && spack clean -a RUN spack install gcc@7.2.0 && spack clean -a
RUN /bin/bash -l -c ' \ RUN /bin/bash -l -c ' \
spack load gcc@7.2.0 \ spack compiler add $(spack location -i gcc@7.2.0)/bin'
&& spack compiler add'
# Build the software on top of the compiler # Build the software on top of the compiler
RUN spack install netlib-scalapack ^openmpi ^openblas %gcc@7.2.0 \ RUN spack install netlib-scalapack ^openmpi ^openblas %gcc@7.2.0 \