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py-rpy2: Add 3.5.17 (#48911)

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* Update rpy2 to newest version and clean up package

* Add me as maintainer

* Update depends section as per review. Add ipython variant. Fix some ranges and add support for python 3.9. Deprecated outdated versions

* refine depends_on and remove redundant version info

* style
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Chris Marsh 2025-03-04 16:58:12 -06:00 committed by GitHub
parent d6e3292955
commit 7d5b17fbf2
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var/spack/repos/builtin/packages/py-rpy2/package.py
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@ -10,39 +10,66 @@ class PyRpy2(PythonPackage):
interface to R from Python, a proposed high-level interface,
including wrappers to graphical libraries, as well as R-like
structures and functions.
"""
homepage = "https://rpy2.github.io"
pypi = "rpy2/rpy2-2.5.4.tar.gz"
license("GPL-2.0-or-later")
version("3.0.4", sha256="2af5158a5d56af7f7bf5e54d8d7e87b6f115ff40f056d82f93cad0cbf6acc0cb")
version("3.0.0", sha256="34efc2935d9015527837d6b1de29641863d184b19d39ad415d5384be8a015bce")
version("2.9.4", sha256="be57f741d0c284b5d8785ab03dff0e829303e5ac30e548d5ceb46e05b168812e")
version("2.8.6", sha256="004d13734a7b9a85cbc1e7a93ec87df741e28db1273ab5b0d9efaac04a9c5f98")
version("2.5.6", sha256="d0d584c435b5ed376925a95a4525dbe87de7fa9260117e9f208029e0c919ad06")
version("2.5.4", sha256="d521ecdd05cd0c31ab017cb63e9f63c29b524e46ec9063a920f640b5875f8a90")
maintainers("Chrismarsh")
# FIXME: Missing dependencies:
# ld: cannot find -licuuc
# ld: cannot find -licui18
version("3.5.17", sha256="dbff08c30f3d79161922623858a5b3b68a3fba8ee1747d6af41bc4ba68f3d582")
# All versions
depends_on("py-setuptools", type="build")
depends_on("r", type=("build", "run"))
# these are from 2019 and don't cleanly work with new r (4+) and pandas versions
# but the exact version incompatibility range is not clear without substantial testing
with default_args(deprecated=True):
version("3.0.4", sha256="2af5158a5d56af7f7bf5e54d8d7e87b6f115ff40f056d82f93cad0cbf6acc0cb")
version("3.0.0", sha256="34efc2935d9015527837d6b1de29641863d184b19d39ad415d5384be8a015bce")
# @3.0.0:
depends_on("py-cffi@1.0.0:", when="@3.0.0:", type=("build", "run"))
depends_on("py-simplegeneric", when="@3.0.0:", type=("build", "run"))
depends_on("py-pytest", when="@3:", type=("build", "run"))
variant("numpy", default=True, description="Numpy", when="@3.5.17:")
variant("pandas", default=True, description="Pandas", when="@3.5.17:")
variant("ipython", default=True, description="iPython", when="@3.5.17:")
# @2.9.0:
depends_on("r@3.3:", when="@2.9.0:", type=("build", "run"))
depends_on("python@3.5:", when="@2.9.0:", type=("build", "run"))
depends_on("py-jinja2", when="@2.9.0:", type=("build", "run"))
depends_on("py-six", when="@2.9.0:2.9", type=("build", "run"))
# many of the previous minor and patch versions change dependency versions so future updates
# should be careful of that
depends_on("python@3.8:", type=("build", "run"), when="@3.5.17:")
# @:2.8.6
depends_on("r@2.8:", when="@:2.8.6", type=("build", "run"))
depends_on("python@2.7:2.8,3.5:", type=("build", "run"))
# https://github.com/rpy2/rpy2/blob/RELEASE_3_5_17/setup.py#L42C1-L42C14
depends_on("r@3.5:", type=("build", "run"), when="@3.5.17:")
depends_on("py-setuptools@61:", type="build", when="@3.5.17:")
# not explicity stated as required but needed from testing
depends_on("readline", type=("build", "run"), when="@3.5.17:")
# @1.15.1: is needed for run, @1.15.0: for build but use one version for simplicity
depends_on("py-cffi@1.15.1:", type=("build", "run"), when="@3.5.17:")
depends_on("py-jinja2", type=("build", "run"), when="@3.5.17:")
depends_on("py-tzlocal", type=("build", "run"), when="@3.5.17:")
# optional variant
depends_on("py-ipython", type=("build", "run"), when="+ipython")
# optional variant
depends_on("py-numpy@1.26:", type=("build", "run"), when="+numpy ^python@3.9:")
depends_on("py-numpy@:1.25", type=("build", "run"), when="+numpy ^python@:3.8")
# optional variant
depends_on("py-pandas", type=("build", "run"), when="+pandas ^python@:3.9")
depends_on("py-pandas@1.3.5:", type=("build", "run"), when="+pandas ^python@3.10:")
depends_on("py-backports-zoneinfo", type=("build", "run"), when="@3.5.17: ^python@:3.8")
# These are from 2019 and predate the pyproject.toml config that currently exists
with when("@3.0.0:3.0.4"):
# Doesn't support post-distutil removal until 3.5.13
# https://github.com/rpy2/rpy2/releases/tag/RELEASE_3_5_13
depends_on("python@3.5:3.11", type=("build", "run"))
depends_on("py-setuptools", type="build")
depends_on("py-cffi@1.0.0:", type=("build", "run"))
depends_on("py-simplegeneric", type=("build", "run"))
depends_on("py-pytest", type=("build", "run"))
depends_on("r@3.3:", type=("build", "run"))