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New package r-tmixclust (#7658)

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* r-tmixclust: new package

* r-cluster: hash changed

* r-cluster: removed 2.0.6 and added the latest 2.0.7-1
This commit is contained in:
Yifan Zhu 2018-04-12 14:51:51 -05:00 committed by Adam J. Stewart
parent f5e4befcac
commit 7d8e6b2eda
2 changed files with 50 additions and 1 deletions
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2
var/spack/repos/builtin/packages/r-cluster/package.py
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@ -34,6 +34,6 @@ class RCluster(RPackage):
url = "https://cran.rstudio.com/src/contrib/cluster_2.0.6.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/cluster"
version('2.0.6', 'e7d0660b05c65f4d886ebf7f046939ab')
version('2.0.7-1', 'a37add21b91d3e4f3883d005331e0d45')
version('2.0.5', '7330f209ebce960bdee1a6d6679cb85a')
version('2.0.4', 'bb4deceaafb1c42bb1278d5d0dc11e59')

49
var/spack/repos/builtin/packages/r-tmixclust/package.py Normal file
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@ -0,0 +1,49 @@
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RTmixclust(RPackage):
"""Implementation of a clustering method for time series gene expression
data based on mixed-effects models with Gaussian variables and
non-parametric cubic splines estimation. The method can robustly account
for the high levels of noise present in typical gene expression time
series datasets."""
homepage = "https://bioconductor.org/packages/TMixClust/"
url = "https://git.bioconductor.org/packages/TMixClust"
version('1.0.1', git='https://git.bioconductor.org/packages/TMixClust',
commit='0ac800210e3eb9da911767a80fb5582ab33c0cad')
depends_on('r-gss', type=('build', 'run'))
depends_on('r-mvtnorm', type=('build', 'run'))
depends_on('r-zoo', type=('build', 'run'))
depends_on('r-cluster', type=('build', 'run'))
depends_on('r-biocparallel', type=('build', 'run'))
depends_on('r-flexclust', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-spem', type=('build', 'run'))
depends_on('r@3.4.3:3.4.9', when='@1.0.1')