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Add validator for bioconductor packages

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This commit adds a validator function to make sure the versions of R and
bioconductor are in sync.
This commit is contained in:
Glenn Johnson 2016-06-06 17:06:50 -05:00
parent 7213b12324
commit 7da405e630
1 changed files with 13 additions and 0 deletions
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13
var/spack/repos/builtin/packages/r-BiocGenerics/package.py
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@ -38,6 +38,19 @@ class RBiocgenerics(Package):
extends('R')
def validate(self, spec):
"""
Checks that the version of R is appropriate for the Bioconductor
version.
"""
if spec.satisfies('@bioc-3.3'):
if not spec.satisfies('^R@3.3.0:3.3.9'):
raise InstallError('Must use R-3.3 for Bioconductor-3.3')
elif spec.satisfies('@bioc-3.2'):
if not spec.satisfies('^R@3.2.0:3.2.9'):
raise InstallError('Must use R-3.2 for Bioconductor-3.2')
def install(self, spec, prefix):
self.validate(spec)
R('CMD', 'INSTALL', '--library=%s' %
self.module.r_lib_dir, '%s' % self.stage.source_path)