MinCED: Create new package (#6815)

var/spack/repos/builtin/packages/minced/package.py

@@ -0,0 +1,44 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Minced(Package):
+    """MinCED is a program to find Clustered Regularly Interspaced Short
+    Palindromic Repeats (CRISPRs) in full genomes or environmental datasets
+    such as metagenomes, in which sequence size can be anywhere from 100 to
+    800 bp."""
+
+    homepage = "https://github.com/ctSkennerton/minced"
+    url      = "https://github.com/ctSkennerton/minced/archive/0.2.0.tar.gz"
+
+    version('0.2.0', '32544f5a523f10fece6a127699e11245')
+
+    depends_on('java', type=('build', 'run'))
+
+    def install(self, spec, prefix):
+        make()
+        install('minced', prefix)
+        install('minced.jar', prefix)